From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id B1AFD139694 for ; Sat, 25 Feb 2017 19:19:24 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 15A3DE0C10; Sat, 25 Feb 2017 19:19:24 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id E7C8CE0C10 for ; Sat, 25 Feb 2017 19:19:23 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 1F585340FC8 for ; Sat, 25 Feb 2017 19:19:23 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E05445467 for ; Sat, 25 Feb 2017 19:19:21 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1488050288.0eb34b26dabe226e954c42a2a914a0d522a45d2c.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/amap/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/amap/amap-2.2-r3.ebuild X-VCS-Directories: sci-biology/amap/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: 0eb34b26dabe226e954c42a2a914a0d522a45d2c X-VCS-Branch: master Date: Sat, 25 Feb 2017 19:19:21 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: fe524246-ed86-4c97-b5c6-6b35eb7d8bf8 X-Archives-Hash: fbaf73f5c79393c6c02260cee7b21b16 commit: 0eb34b26dabe226e954c42a2a914a0d522a45d2c Author: David Seifert gentoo org> AuthorDate: Sat Feb 25 17:54:59 2017 +0000 Commit: David Seifert gentoo org> CommitDate: Sat Feb 25 19:18:08 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0eb34b26 sci-biology/amap: Modernise to EAPI 6 Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/amap/amap-2.2-r3.ebuild | 57 +++++++++++++++++++++++++++++++++++++ 1 file changed, 57 insertions(+) diff --git a/sci-biology/amap/amap-2.2-r3.ebuild b/sci-biology/amap/amap-2.2-r3.ebuild new file mode 100644 index 0000000000..68af0d66ac --- /dev/null +++ b/sci-biology/amap/amap-2.2-r3.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit java-pkg-opt-2 java-ant-2 toolchain-funcs + +MY_P=${PN}.${PV} + +DESCRIPTION="Protein multiple-alignment-based sequence annealing" +HOMEPAGE="http://bio.math.berkeley.edu/amap/" +SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="java" + +RDEPEND="java? ( >=virtual/jre-1.5 )" +DEPEND="java? ( >=virtual/jdk-1.5 )" + +S=${WORKDIR}/${PN}-align + +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-includes.patch +) + +src_prepare() { + default + java-pkg-opt-2_src_prepare +} + +src_compile() { + emake -C align CXX="$(tc-getCXX)" OPT_CXXFLAGS="${CXXFLAGS}" + + if use java; then + pushd display >/dev/null || die + eant -Ddisplay all || die + popd >/dev/null || die + fi +} + +src_install() { + dobin align/${PN} + + dodoc align/{README,PROBCONS.README} + + insinto /usr/share/${PN}/examples + doins -r examples/. + + if use java; then + java-pkg_newjar display/AmapDisplay.jar amapdisplay.jar + java-pkg_dolauncher amapdisplay --jar amapdisplay.jar + fi +}