* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2015-08-31 6:46 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2015-08-31 6:46 UTC (permalink / raw
To: gentoo-commits
commit: 39f6bffbab1688bd69b7ba2d103eb7a95d569fe8
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Aug 31 06:42:28 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Aug 31 06:46:38 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=39f6bffb
sci-biology/rebase: Version Bump
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1509.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 632fbeb..9e63de1 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,2 +1,3 @@
DIST rebase-1507.tar.xz 68538212 SHA256 87880a3f8cd49f537abf0a3d3fe00dca928ab5299cfd436351a279051f358efe SHA512 9fcb61d0f53f227485ecdaa86709b3fb7c20d8a430c456d2c24f68154691028709358d8dc25d4be2662d368e3cdd13d15eb316342dfb0f1aa8447b3742b80375 WHIRLPOOL f8cfc127890e17529d557f69c20be7ad90cd9e01ff9e112d41bb8c88359f7310744977253e8f82c71301ef1ea449f2e4cee9189e3b552edc242ab1033dca0b5e
DIST rebase-1508.tar.xz 69944352 SHA256 579ef686b0efea32d88633f85411da9c1396572eec0d20bd163ca7bf615c7b04 SHA512 d5dc9eb704ce28ab7951ab2a8781de76dcbd7a4b6d6c6634abcd36766c8dce77b6d8a712789fe6293a6ddc66cd9103e17121b0ff52f0d3fbabfc5bf47c2f2100 WHIRLPOOL f082a3096cef636a61a176d3d3fe5b993bc83e3b332d134ebc20201d21f2f66e3400ffc5d561018c63fb3201c5fc0862126a32c17c5c96f118859b62a618d341
+DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
diff --git a/sci-biology/rebase/rebase-1509.ebuild b/sci-biology/rebase/rebase-1509.ebuild
new file mode 100644
index 0000000..1bfa8ba
--- /dev/null
+++ b/sci-biology/rebase/rebase-1509.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2015-09-19 12:41 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2015-09-19 12:41 UTC (permalink / raw
To: gentoo-commits
commit: 1d58b21bcf3846c98801b1c602fda757c3ca5bb7
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 19 12:41:36 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sat Sep 19 12:41:36 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1d58b21b
sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #559222
Package-Manager: portage-2.2.20.1
sci-biology/rebase/rebase-1508.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1508.ebuild b/sci-biology/rebase/rebase-1508.ebuild
index 1bfa8ba..0088b50 100644
--- a/sci-biology/rebase/rebase-1508.ebuild
+++ b/sci-biology/rebase/rebase-1508.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2015-10-01 7:03 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2015-10-01 7:03 UTC (permalink / raw
To: gentoo-commits
commit: fe55c0431b875b31ad9a1b76e1c3cbef53281e10
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 1 06:40:28 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Oct 1 07:03:13 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fe55c043
sci-biology/rebase: Cleaned old
Package-Manager: portage-2.2.22
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 -
sci-biology/rebase/rebase-1507.ebuild | 46 -----------------------------------
2 files changed, 47 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 9e63de1..f322a7f 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,2 @@
-DIST rebase-1507.tar.xz 68538212 SHA256 87880a3f8cd49f537abf0a3d3fe00dca928ab5299cfd436351a279051f358efe SHA512 9fcb61d0f53f227485ecdaa86709b3fb7c20d8a430c456d2c24f68154691028709358d8dc25d4be2662d368e3cdd13d15eb316342dfb0f1aa8447b3742b80375 WHIRLPOOL f8cfc127890e17529d557f69c20be7ad90cd9e01ff9e112d41bb8c88359f7310744977253e8f82c71301ef1ea449f2e4cee9189e3b552edc242ab1033dca0b5e
DIST rebase-1508.tar.xz 69944352 SHA256 579ef686b0efea32d88633f85411da9c1396572eec0d20bd163ca7bf615c7b04 SHA512 d5dc9eb704ce28ab7951ab2a8781de76dcbd7a4b6d6c6634abcd36766c8dce77b6d8a712789fe6293a6ddc66cd9103e17121b0ff52f0d3fbabfc5bf47c2f2100 WHIRLPOOL f082a3096cef636a61a176d3d3fe5b993bc83e3b332d134ebc20201d21f2f66e3400ffc5d561018c63fb3201c5fc0862126a32c17c5c96f118859b62a618d341
DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
diff --git a/sci-biology/rebase/rebase-1507.ebuild b/sci-biology/rebase/rebase-1507.ebuild
deleted file mode 100644
index 0088b50..0000000
--- a/sci-biology/rebase/rebase-1507.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2015-10-01 10:13 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2015-10-01 10:13 UTC (permalink / raw
To: gentoo-commits
commit: 6dcb50e5858f5a26fefcd998abd3d5caa9940ea5
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 1 07:44:53 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Oct 1 10:12:31 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6dcb50e5
sci-biology/rebase: Version Bump
Package-Manager: portage-2.2.22
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1510.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index f322a7f..e385613 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,2 +1,3 @@
DIST rebase-1508.tar.xz 69944352 SHA256 579ef686b0efea32d88633f85411da9c1396572eec0d20bd163ca7bf615c7b04 SHA512 d5dc9eb704ce28ab7951ab2a8781de76dcbd7a4b6d6c6634abcd36766c8dce77b6d8a712789fe6293a6ddc66cd9103e17121b0ff52f0d3fbabfc5bf47c2f2100 WHIRLPOOL f082a3096cef636a61a176d3d3fe5b993bc83e3b332d134ebc20201d21f2f66e3400ffc5d561018c63fb3201c5fc0862126a32c17c5c96f118859b62a618d341
DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
+DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
diff --git a/sci-biology/rebase/rebase-1510.ebuild b/sci-biology/rebase/rebase-1510.ebuild
new file mode 100644
index 0000000..1bfa8ba
--- /dev/null
+++ b/sci-biology/rebase/rebase-1510.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2015-10-01 10:16 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2015-10-01 10:16 UTC (permalink / raw
To: gentoo-commits
commit: 352f51b98d8c5cb88d16734c445979be065ce7ba
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 1 10:16:29 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Oct 1 10:16:29 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=352f51b9
sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #561946
Package-Manager: portage-2.2.20.1
sci-biology/rebase/rebase-1509.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1509.ebuild b/sci-biology/rebase/rebase-1509.ebuild
index 1bfa8ba..0088b50 100644
--- a/sci-biology/rebase/rebase-1509.ebuild
+++ b/sci-biology/rebase/rebase-1509.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2015-10-30 12:03 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2015-10-30 12:03 UTC (permalink / raw
To: gentoo-commits
commit: 84136fd808ec7489b2ea12eec251197d248b6330
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 30 08:27:57 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Oct 30 12:03:49 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=84136fd8
sci-biology/rebase: Version Bump
Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1511.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index e385613..7bc8b26 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,4 @@
DIST rebase-1508.tar.xz 69944352 SHA256 579ef686b0efea32d88633f85411da9c1396572eec0d20bd163ca7bf615c7b04 SHA512 d5dc9eb704ce28ab7951ab2a8781de76dcbd7a4b6d6c6634abcd36766c8dce77b6d8a712789fe6293a6ddc66cd9103e17121b0ff52f0d3fbabfc5bf47c2f2100 WHIRLPOOL f082a3096cef636a61a176d3d3fe5b993bc83e3b332d134ebc20201d21f2f66e3400ffc5d561018c63fb3201c5fc0862126a32c17c5c96f118859b62a618d341
DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
+DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7
diff --git a/sci-biology/rebase/rebase-1511.ebuild b/sci-biology/rebase/rebase-1511.ebuild
new file mode 100644
index 0000000..1bfa8ba
--- /dev/null
+++ b/sci-biology/rebase/rebase-1511.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-01-02 17:42 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-01-02 17:42 UTC (permalink / raw
To: gentoo-commits
commit: a6d2d916b6cac0689cb3c569eeafd99fb0182ad3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 2 17:39:16 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 2 17:39:16 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a6d2d916
sci-biology/rebase: Version Bump
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1601.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 7bc8b26..e8457de 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -2,3 +2,4 @@ DIST rebase-1508.tar.xz 69944352 SHA256 579ef686b0efea32d88633f85411da9c1396572e
DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7
+DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783
diff --git a/sci-biology/rebase/rebase-1601.ebuild b/sci-biology/rebase/rebase-1601.ebuild
new file mode 100644
index 0000000..9adb365
--- /dev/null
+++ b/sci-biology/rebase/rebase-1601.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-01-02 17:44 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-01-02 17:44 UTC (permalink / raw
To: gentoo-commits
commit: f74fee48d251d928058664d044251ee3354b781e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 2 17:43:59 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 2 17:44:11 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f74fee48
sci-biology/rebase: Drop old
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 -
sci-biology/rebase/rebase-1508.ebuild | 46 -----------------------------------
2 files changed, 47 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index e8457de..45a9283 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,4 +1,3 @@
-DIST rebase-1508.tar.xz 69944352 SHA256 579ef686b0efea32d88633f85411da9c1396572eec0d20bd163ca7bf615c7b04 SHA512 d5dc9eb704ce28ab7951ab2a8781de76dcbd7a4b6d6c6634abcd36766c8dce77b6d8a712789fe6293a6ddc66cd9103e17121b0ff52f0d3fbabfc5bf47c2f2100 WHIRLPOOL f082a3096cef636a61a176d3d3fe5b993bc83e3b332d134ebc20201d21f2f66e3400ffc5d561018c63fb3201c5fc0862126a32c17c5c96f118859b62a618d341
DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7
diff --git a/sci-biology/rebase/rebase-1508.ebuild b/sci-biology/rebase/rebase-1508.ebuild
deleted file mode 100644
index 0088b50..0000000
--- a/sci-biology/rebase/rebase-1508.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-01-02 17:51 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2016-01-02 17:51 UTC (permalink / raw
To: gentoo-commits
commit: c67207a9c35ad995f16f22c1e90814075fa2188b
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 2 17:51:12 2016 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sat Jan 2 17:51:12 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c67207a9
sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #570636
Package-Manager: portage-2.2.26
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-biology/rebase/rebase-1510.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1510.ebuild b/sci-biology/rebase/rebase-1510.ebuild
index 1bfa8ba..0088b50 100644
--- a/sci-biology/rebase/rebase-1510.ebuild
+++ b/sci-biology/rebase/rebase-1510.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-01-03 17:30 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-01-03 17:30 UTC (permalink / raw
To: gentoo-commits
commit: 5288f87a692077c3f198a3781870e3c9b049f44c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 2 18:07:44 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 3 17:30:17 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5288f87a
sci-biology/rebase: Drop old
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 -
sci-biology/rebase/rebase-1509.ebuild | 46 -----------------------------------
2 files changed, 47 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 45a9283..5654025 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,4 +1,3 @@
-DIST rebase-1509.tar.xz 81228428 SHA256 ffad3955197850b4383bf7b96278af357cb99bec129e7a00d7d601e76868870b SHA512 2d9f90c24ab977b29a1e1e790966f48274691375ab5f4b7a4f37c1e62dc8bd4d0b4409475e9b97bb63e3f481066f8407efc4d1314ee24c836f60b53d736d77ed WHIRLPOOL ab86576f037d142a285f3830f88e5b750a52f79c90f35bd117695a5de125c753747329522b1f514c503ff7e28e8aaaa2298bff3379f134db06fc270ec7364a52
DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7
DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783
diff --git a/sci-biology/rebase/rebase-1509.ebuild b/sci-biology/rebase/rebase-1509.ebuild
deleted file mode 100644
index 0088b50..0000000
--- a/sci-biology/rebase/rebase-1509.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-02-01 11:13 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-02-01 11:13 UTC (permalink / raw
To: gentoo-commits
commit: c67f961c0f4e2644fd73be98fa77e4fb2dd9b0d1
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 1 11:13:00 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Feb 1 11:13:20 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c67f961c
sci-biology/rebase: Version Bump
Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1602.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 5654025..42575ea 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,4 @@
DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7
DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783
+DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
diff --git a/sci-biology/rebase/rebase-1602.ebuild b/sci-biology/rebase/rebase-1602.ebuild
new file mode 100644
index 0000000..9adb365
--- /dev/null
+++ b/sci-biology/rebase/rebase-1602.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-02-13 15:27 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2016-02-13 15:27 UTC (permalink / raw
To: gentoo-commits
commit: d5a6890344f2f89aa0e55730e8aafac16d5b2395
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 13 15:27:44 2016 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sat Feb 13 15:27:44 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d5a68903
sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #573576
Package-Manager: portage-2.2.26
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-biology/rebase/rebase-1601.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1601.ebuild b/sci-biology/rebase/rebase-1601.ebuild
index 9adb365..875464d 100644
--- a/sci-biology/rebase/rebase-1601.ebuild
+++ b/sci-biology/rebase/rebase-1601.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-02-14 17:54 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-02-14 17:54 UTC (permalink / raw
To: gentoo-commits
commit: 31b8da06f0bb9e3516123d8da2a2b0ec8e3d5a51
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 14 17:48:51 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 14 17:54:21 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=31b8da06
sci-biology/rebase: Drop old
Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 2 --
sci-biology/rebase/rebase-1510.ebuild | 46 -----------------------------------
sci-biology/rebase/rebase-1511.ebuild | 46 -----------------------------------
3 files changed, 94 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 42575ea..3afe7ef 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,4 +1,2 @@
-DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a
-DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7
DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783
DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
diff --git a/sci-biology/rebase/rebase-1510.ebuild b/sci-biology/rebase/rebase-1510.ebuild
deleted file mode 100644
index 0088b50..0000000
--- a/sci-biology/rebase/rebase-1510.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1511.ebuild b/sci-biology/rebase/rebase-1511.ebuild
deleted file mode 100644
index 1bfa8ba..0000000
--- a/sci-biology/rebase/rebase-1511.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-04-02 10:09 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-04-02 10:09 UTC (permalink / raw
To: gentoo-commits
commit: e9cac45475fccd02e6d40c58fd876ca63b2e16f2
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Apr 2 10:09:36 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Apr 2 10:09:56 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e9cac454
sci-biology/rebase: Version Bump
Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1604.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 3afe7ef..fdaa1df 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,2 +1,3 @@
DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783
DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
+DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383f0beab256e149296ee5d982ef SHA512 8ba6a24a8cf1b71a1ac2e0fb1634c0307d570af459fc940639046bd57362f3750e5f0390bcb7f3c7d2b924e1a5bf02825b5feb87a1f7d670d755f3b843df91a3 WHIRLPOOL 8ccaf435d7582fe1b86676037aaf7b0db742cd8d998a55d400f941a94e53731e1814028e1fed1be46f53bea702b570a1bffd73ba328ee06db17adcd731e3733c
diff --git a/sci-biology/rebase/rebase-1604.ebuild b/sci-biology/rebase/rebase-1604.ebuild
new file mode 100644
index 0000000..9adb365
--- /dev/null
+++ b/sci-biology/rebase/rebase-1604.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-04-02 11:04 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2016-04-02 11:04 UTC (permalink / raw
To: gentoo-commits
commit: c731edf214f691748791cbccdb14b70cbbfce9d5
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Sat Apr 2 11:03:57 2016 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Sat Apr 2 11:03:57 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c731edf2
sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #578804
Package-Manager: portage-2.2.26
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-biology/rebase/rebase-1602.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1602.ebuild b/sci-biology/rebase/rebase-1602.ebuild
index 9adb365..875464d 100644
--- a/sci-biology/rebase/rebase-1602.ebuild
+++ b/sci-biology/rebase/rebase-1602.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-07-02 17:50 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-07-02 17:50 UTC (permalink / raw
To: gentoo-commits
commit: f5abfaf9a26de204a8ae510a15e910b1de6ce99b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 2 17:48:07 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jul 2 17:49:57 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f5abfaf9
sci-biology/rebase: Bump to latest version
Package-Manager: portage-2.3.0
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 2 +-
sci-biology/rebase/{rebase-1601.ebuild => rebase-1607.ebuild} | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index fdaa1df..f6e4550 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,3 @@
-DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783
DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383f0beab256e149296ee5d982ef SHA512 8ba6a24a8cf1b71a1ac2e0fb1634c0307d570af459fc940639046bd57362f3750e5f0390bcb7f3c7d2b924e1a5bf02825b5feb87a1f7d670d755f3b843df91a3 WHIRLPOOL 8ccaf435d7582fe1b86676037aaf7b0db742cd8d998a55d400f941a94e53731e1814028e1fed1be46f53bea702b570a1bffd73ba328ee06db17adcd731e3733c
+DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
diff --git a/sci-biology/rebase/rebase-1601.ebuild b/sci-biology/rebase/rebase-1607.ebuild
similarity index 91%
rename from sci-biology/rebase/rebase-1601.ebuild
rename to sci-biology/rebase/rebase-1607.ebuild
index 875464d..9adb365 100644
--- a/sci-biology/rebase/rebase-1601.ebuild
+++ b/sci-biology/rebase/rebase-1607.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-07-31 17:36 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-07-31 17:36 UTC (permalink / raw
To: gentoo-commits
commit: 878ae9fced67cace8781f8bce1079f2cda86e6d4
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jul 31 16:13:47 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jul 31 17:35:49 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=878ae9fc
sci-biology/rebase: Version Bump
Package-Manager: portage-2.3.0
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1608.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index f6e4550..988fe24 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,4 @@
DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383f0beab256e149296ee5d982ef SHA512 8ba6a24a8cf1b71a1ac2e0fb1634c0307d570af459fc940639046bd57362f3750e5f0390bcb7f3c7d2b924e1a5bf02825b5feb87a1f7d670d755f3b843df91a3 WHIRLPOOL 8ccaf435d7582fe1b86676037aaf7b0db742cd8d998a55d400f941a94e53731e1814028e1fed1be46f53bea702b570a1bffd73ba328ee06db17adcd731e3733c
DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
+DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14642454fad05da8deef271bb81 SHA512 989d353cb9d73039d6c08805c4d32dbef1bdd37683f4c2ead5fa4889eae05bf3bdba54214d199b87961d8ace4d950f21dbc749e955867f8c6ccac766c7a06520 WHIRLPOOL bc89aa9230680ac08d3c17f7068bb45cb28dbf45038ffda5c2b4660fe366cdc32376ca32439953a2faa7524c6a5c4811a124288b85cf8320ef324458e3957d70
diff --git a/sci-biology/rebase/rebase-1608.ebuild b/sci-biology/rebase/rebase-1608.ebuild
new file mode 100644
index 0000000..9adb365
--- /dev/null
+++ b/sci-biology/rebase/rebase-1608.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-09-10 20:00 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-09-10 20:00 UTC (permalink / raw
To: gentoo-commits
commit: 45dd5298fbd9562c37729295b104ae6e4e87cc81
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 10 20:00:00 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Sep 10 20:00:37 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=45dd5298
sci-biology/rebase: Version Bump
Package-Manager: portage-2.3.0
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1609.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 988fe24..a41476f 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -2,3 +2,4 @@ DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b21
DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383f0beab256e149296ee5d982ef SHA512 8ba6a24a8cf1b71a1ac2e0fb1634c0307d570af459fc940639046bd57362f3750e5f0390bcb7f3c7d2b924e1a5bf02825b5feb87a1f7d670d755f3b843df91a3 WHIRLPOOL 8ccaf435d7582fe1b86676037aaf7b0db742cd8d998a55d400f941a94e53731e1814028e1fed1be46f53bea702b570a1bffd73ba328ee06db17adcd731e3733c
DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14642454fad05da8deef271bb81 SHA512 989d353cb9d73039d6c08805c4d32dbef1bdd37683f4c2ead5fa4889eae05bf3bdba54214d199b87961d8ace4d950f21dbc749e955867f8c6ccac766c7a06520 WHIRLPOOL bc89aa9230680ac08d3c17f7068bb45cb28dbf45038ffda5c2b4660fe366cdc32376ca32439953a2faa7524c6a5c4811a124288b85cf8320ef324458e3957d70
+DIST rebase-1609.tar.xz 140865364 SHA256 0799f4a1dae79eaea6629425f6dae104951b94777dc58866adceb4277c577f51 SHA512 3a06a67c7df78f3eb6214dece1f2045ce2610cf34efc8f9eb34b97ca2aa818ea9b52124da1b44895a5a53ec45b19bb78f0cc036b2053e28f1cb72087cd42ad35 WHIRLPOOL fcd5ff5674465cab269dbe8c4f7e5c2c33f6b3b2a515e3f1c1a8c8b60fc68ecca1f48ea4c363ce52b77ddfd50e8fc9c22aad69b7ebc190ccdcfcd2b52d3bc27b
diff --git a/sci-biology/rebase/rebase-1609.ebuild b/sci-biology/rebase/rebase-1609.ebuild
new file mode 100644
index 00000000..47f2e43
--- /dev/null
+++ b/sci-biology/rebase/rebase-1609.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-10-29 11:11 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-10-29 11:11 UTC (permalink / raw
To: gentoo-commits
commit: a300ee7a49ca26ba081d397ca413625dd4df4656
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Oct 29 11:04:39 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Oct 29 11:10:59 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a300ee7a
sci-biology/rebase: Bump to latest DB
Package-Manager: portage-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1611.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index a41476f..c89b185 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -3,3 +3,4 @@ DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383
DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14642454fad05da8deef271bb81 SHA512 989d353cb9d73039d6c08805c4d32dbef1bdd37683f4c2ead5fa4889eae05bf3bdba54214d199b87961d8ace4d950f21dbc749e955867f8c6ccac766c7a06520 WHIRLPOOL bc89aa9230680ac08d3c17f7068bb45cb28dbf45038ffda5c2b4660fe366cdc32376ca32439953a2faa7524c6a5c4811a124288b85cf8320ef324458e3957d70
DIST rebase-1609.tar.xz 140865364 SHA256 0799f4a1dae79eaea6629425f6dae104951b94777dc58866adceb4277c577f51 SHA512 3a06a67c7df78f3eb6214dece1f2045ce2610cf34efc8f9eb34b97ca2aa818ea9b52124da1b44895a5a53ec45b19bb78f0cc036b2053e28f1cb72087cd42ad35 WHIRLPOOL fcd5ff5674465cab269dbe8c4f7e5c2c33f6b3b2a515e3f1c1a8c8b60fc68ecca1f48ea4c363ce52b77ddfd50e8fc9c22aad69b7ebc190ccdcfcd2b52d3bc27b
+DIST rebase-1611.tar.xz 117976252 SHA256 fcfe506c8f018b8d7b43c5f87e4125310e43d2d2ea5f3ea6b3523f9d23ae7d1c SHA512 33287d497e399a7cfb8e7dc6e2b905553303b4b8dce49066eafc3f48cac47e9e3fd8c8736a7a0352ed5fd5da39aca220ed59884f887a5588cedc2d5e56b6e764 WHIRLPOOL 52758d6017e0725bd2f84cb2cd4f16b3965a21f45a664ed71078d50b95a64664239936a605052bc3b34ef67e70cb96fd5b1e2005bdc699be9cff9f919b197734
diff --git a/sci-biology/rebase/rebase-1611.ebuild b/sci-biology/rebase/rebase-1611.ebuild
new file mode 100644
index 00000000..47f2e43
--- /dev/null
+++ b/sci-biology/rebase/rebase-1611.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-12-09 20:40 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2016-12-09 20:40 UTC (permalink / raw
To: gentoo-commits
commit: 96e97480355ca042f2b728d33ea12aeb7550c25b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Dec 9 20:40:42 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Dec 9 20:40:58 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=96e97480
sci-biology/rebase: Version Bump
Package-Manager: portage-2.3.3
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1612.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index c89b185..167568e 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -4,3 +4,4 @@ DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c
DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14642454fad05da8deef271bb81 SHA512 989d353cb9d73039d6c08805c4d32dbef1bdd37683f4c2ead5fa4889eae05bf3bdba54214d199b87961d8ace4d950f21dbc749e955867f8c6ccac766c7a06520 WHIRLPOOL bc89aa9230680ac08d3c17f7068bb45cb28dbf45038ffda5c2b4660fe366cdc32376ca32439953a2faa7524c6a5c4811a124288b85cf8320ef324458e3957d70
DIST rebase-1609.tar.xz 140865364 SHA256 0799f4a1dae79eaea6629425f6dae104951b94777dc58866adceb4277c577f51 SHA512 3a06a67c7df78f3eb6214dece1f2045ce2610cf34efc8f9eb34b97ca2aa818ea9b52124da1b44895a5a53ec45b19bb78f0cc036b2053e28f1cb72087cd42ad35 WHIRLPOOL fcd5ff5674465cab269dbe8c4f7e5c2c33f6b3b2a515e3f1c1a8c8b60fc68ecca1f48ea4c363ce52b77ddfd50e8fc9c22aad69b7ebc190ccdcfcd2b52d3bc27b
DIST rebase-1611.tar.xz 117976252 SHA256 fcfe506c8f018b8d7b43c5f87e4125310e43d2d2ea5f3ea6b3523f9d23ae7d1c SHA512 33287d497e399a7cfb8e7dc6e2b905553303b4b8dce49066eafc3f48cac47e9e3fd8c8736a7a0352ed5fd5da39aca220ed59884f887a5588cedc2d5e56b6e764 WHIRLPOOL 52758d6017e0725bd2f84cb2cd4f16b3965a21f45a664ed71078d50b95a64664239936a605052bc3b34ef67e70cb96fd5b1e2005bdc699be9cff9f919b197734
+DIST rebase-1612.tar.xz 122519992 SHA256 eb94346564c43244c5959b5948fe59f0ebe9e2590978f1ec8787a3395e918368 SHA512 3936749465f828d1b5922b4c75635a678e2e865cef88084d819291227bd1404e56edbc208e986a7373c32ff0172709cfcb8c4343f8512fbdacf39666f97c5026 WHIRLPOOL 729aa68437b48e3bcbaaf3747feaaf7090a612d2a05658a28ca74b8c58b3227718b0ca9d17a9d5caba42ba02cb6d11fe8bc34796bf385a8310bed2aecae20985
diff --git a/sci-biology/rebase/rebase-1612.ebuild b/sci-biology/rebase/rebase-1612.ebuild
new file mode 100644
index 00000000..47f2e43
--- /dev/null
+++ b/sci-biology/rebase/rebase-1612.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2016-12-20 13:29 Tobias Klausmann
0 siblings, 0 replies; 38+ messages in thread
From: Tobias Klausmann @ 2016-12-20 13:29 UTC (permalink / raw
To: gentoo-commits
commit: 7d864fe0d8df1c4eec9066b73ee31bd44c612b0c
Author: Tobias Klausmann <klausman <AT> gentoo <DOT> org>
AuthorDate: Tue Dec 20 13:21:35 2016 +0000
Commit: Tobias Klausmann <klausman <AT> gentoo <DOT> org>
CommitDate: Tue Dec 20 13:29:30 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7d864fe0
sci-biology/rebase-1604-r0: stable on amd64
Gentoo-Bug: 587822
sci-biology/rebase/rebase-1604.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1604.ebuild b/sci-biology/rebase/rebase-1604.ebuild
index 9adb365..436b460 100644
--- a/sci-biology/rebase/rebase-1604.ebuild
+++ b/sci-biology/rebase/rebase-1604.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-01-02 9:54 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2017-01-02 9:54 UTC (permalink / raw
To: gentoo-commits
commit: ca56d1d1b7e566f4c95c3db6b31f2c73ae180cbf
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 2 09:51:36 2017 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Mon Jan 2 09:54:02 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ca56d1d1
sci-biology/rebase: x86 stable wrt bug #590146
Package-Manager: portage-2.3.0
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-biology/rebase/rebase-1607.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1607.ebuild b/sci-biology/rebase/rebase-1607.ebuild
index 326bcc7..b058fa9 100644
--- a/sci-biology/rebase/rebase-1607.ebuild
+++ b/sci-biology/rebase/rebase-1607.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="amd64 ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-01-02 11:02 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2017-01-02 11:02 UTC (permalink / raw
To: gentoo-commits
commit: 76a382082cec100c21daf2d0bd6c4a39878a76dc
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 2 11:01:11 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 2 11:02:34 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=76a38208
sci-biology/rebase: Version Bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1701.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 167568e..c298e33 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -5,3 +5,4 @@ DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14
DIST rebase-1609.tar.xz 140865364 SHA256 0799f4a1dae79eaea6629425f6dae104951b94777dc58866adceb4277c577f51 SHA512 3a06a67c7df78f3eb6214dece1f2045ce2610cf34efc8f9eb34b97ca2aa818ea9b52124da1b44895a5a53ec45b19bb78f0cc036b2053e28f1cb72087cd42ad35 WHIRLPOOL fcd5ff5674465cab269dbe8c4f7e5c2c33f6b3b2a515e3f1c1a8c8b60fc68ecca1f48ea4c363ce52b77ddfd50e8fc9c22aad69b7ebc190ccdcfcd2b52d3bc27b
DIST rebase-1611.tar.xz 117976252 SHA256 fcfe506c8f018b8d7b43c5f87e4125310e43d2d2ea5f3ea6b3523f9d23ae7d1c SHA512 33287d497e399a7cfb8e7dc6e2b905553303b4b8dce49066eafc3f48cac47e9e3fd8c8736a7a0352ed5fd5da39aca220ed59884f887a5588cedc2d5e56b6e764 WHIRLPOOL 52758d6017e0725bd2f84cb2cd4f16b3965a21f45a664ed71078d50b95a64664239936a605052bc3b34ef67e70cb96fd5b1e2005bdc699be9cff9f919b197734
DIST rebase-1612.tar.xz 122519992 SHA256 eb94346564c43244c5959b5948fe59f0ebe9e2590978f1ec8787a3395e918368 SHA512 3936749465f828d1b5922b4c75635a678e2e865cef88084d819291227bd1404e56edbc208e986a7373c32ff0172709cfcb8c4343f8512fbdacf39666f97c5026 WHIRLPOOL 729aa68437b48e3bcbaaf3747feaaf7090a612d2a05658a28ca74b8c58b3227718b0ca9d17a9d5caba42ba02cb6d11fe8bc34796bf385a8310bed2aecae20985
+DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
diff --git a/sci-biology/rebase/rebase-1701.ebuild b/sci-biology/rebase/rebase-1701.ebuild
new file mode 100644
index 00000000..bc634ba
--- /dev/null
+++ b/sci-biology/rebase/rebase-1701.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-01-02 22:09 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2017-01-02 22:09 UTC (permalink / raw
To: gentoo-commits
commit: 7e87f658f887ff9c3af76e3175fa3aa2912adf54
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 2 21:52:30 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 2 22:09:06 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7e87f658
sci-biology/rebase: Drop old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 5 ----
sci-biology/rebase/rebase-1602.ebuild | 46 -----------------------------------
sci-biology/rebase/rebase-1604.ebuild | 46 -----------------------------------
sci-biology/rebase/rebase-1608.ebuild | 46 -----------------------------------
sci-biology/rebase/rebase-1609.ebuild | 46 -----------------------------------
sci-biology/rebase/rebase-1611.ebuild | 46 -----------------------------------
6 files changed, 235 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index c298e33..00e400e 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,8 +1,3 @@
-DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
-DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383f0beab256e149296ee5d982ef SHA512 8ba6a24a8cf1b71a1ac2e0fb1634c0307d570af459fc940639046bd57362f3750e5f0390bcb7f3c7d2b924e1a5bf02825b5feb87a1f7d670d755f3b843df91a3 WHIRLPOOL 8ccaf435d7582fe1b86676037aaf7b0db742cd8d998a55d400f941a94e53731e1814028e1fed1be46f53bea702b570a1bffd73ba328ee06db17adcd731e3733c
DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
-DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14642454fad05da8deef271bb81 SHA512 989d353cb9d73039d6c08805c4d32dbef1bdd37683f4c2ead5fa4889eae05bf3bdba54214d199b87961d8ace4d950f21dbc749e955867f8c6ccac766c7a06520 WHIRLPOOL bc89aa9230680ac08d3c17f7068bb45cb28dbf45038ffda5c2b4660fe366cdc32376ca32439953a2faa7524c6a5c4811a124288b85cf8320ef324458e3957d70
-DIST rebase-1609.tar.xz 140865364 SHA256 0799f4a1dae79eaea6629425f6dae104951b94777dc58866adceb4277c577f51 SHA512 3a06a67c7df78f3eb6214dece1f2045ce2610cf34efc8f9eb34b97ca2aa818ea9b52124da1b44895a5a53ec45b19bb78f0cc036b2053e28f1cb72087cd42ad35 WHIRLPOOL fcd5ff5674465cab269dbe8c4f7e5c2c33f6b3b2a515e3f1c1a8c8b60fc68ecca1f48ea4c363ce52b77ddfd50e8fc9c22aad69b7ebc190ccdcfcd2b52d3bc27b
-DIST rebase-1611.tar.xz 117976252 SHA256 fcfe506c8f018b8d7b43c5f87e4125310e43d2d2ea5f3ea6b3523f9d23ae7d1c SHA512 33287d497e399a7cfb8e7dc6e2b905553303b4b8dce49066eafc3f48cac47e9e3fd8c8736a7a0352ed5fd5da39aca220ed59884f887a5588cedc2d5e56b6e764 WHIRLPOOL 52758d6017e0725bd2f84cb2cd4f16b3965a21f45a664ed71078d50b95a64664239936a605052bc3b34ef67e70cb96fd5b1e2005bdc699be9cff9f919b197734
DIST rebase-1612.tar.xz 122519992 SHA256 eb94346564c43244c5959b5948fe59f0ebe9e2590978f1ec8787a3395e918368 SHA512 3936749465f828d1b5922b4c75635a678e2e865cef88084d819291227bd1404e56edbc208e986a7373c32ff0172709cfcb8c4343f8512fbdacf39666f97c5026 WHIRLPOOL 729aa68437b48e3bcbaaf3747feaaf7090a612d2a05658a28ca74b8c58b3227718b0ca9d17a9d5caba42ba02cb6d11fe8bc34796bf385a8310bed2aecae20985
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
diff --git a/sci-biology/rebase/rebase-1602.ebuild b/sci-biology/rebase/rebase-1602.ebuild
deleted file mode 100644
index 875464d..00000000
--- a/sci-biology/rebase/rebase-1602.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1604.ebuild b/sci-biology/rebase/rebase-1604.ebuild
deleted file mode 100644
index 436b460..00000000
--- a/sci-biology/rebase/rebase-1604.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1608.ebuild b/sci-biology/rebase/rebase-1608.ebuild
deleted file mode 100644
index 9adb365..00000000
--- a/sci-biology/rebase/rebase-1608.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1609.ebuild b/sci-biology/rebase/rebase-1609.ebuild
deleted file mode 100644
index 47f2e43..00000000
--- a/sci-biology/rebase/rebase-1609.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1611.ebuild b/sci-biology/rebase/rebase-1611.ebuild
deleted file mode 100644
index 47f2e43..00000000
--- a/sci-biology/rebase/rebase-1611.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-01-04 16:56 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2017-01-04 16:56 UTC (permalink / raw
To: gentoo-commits
commit: 034d74f2b0e3d023d3a1ce18236f2fc70300d521
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 4 16:55:21 2017 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Wed Jan 4 16:55:21 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=034d74f2
sci-biology/rebase: amd64 stable wrt bug #604448
Package-Manager: portage-2.3.0
RepoMan-Options: --include-arches="amd64"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-biology/rebase/rebase-1612.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/rebase/rebase-1612.ebuild b/sci-biology/rebase/rebase-1612.ebuild
index 47f2e43..f07f230 100644
--- a/sci-biology/rebase/rebase-1612.ebuild
+++ b/sci-biology/rebase/rebase-1612.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-01-04 17:09 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2017-01-04 17:09 UTC (permalink / raw
To: gentoo-commits
commit: 56447bdbe545eadf90820c6de935476b74179d65
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 4 17:07:50 2017 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Wed Jan 4 17:07:50 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=56447bdb
sci-biology/rebase: x86 stable wrt bug #604448
Package-Manager: portage-2.3.0
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-biology/rebase/rebase-1612.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1612.ebuild b/sci-biology/rebase/rebase-1612.ebuild
index f07f230..7ec9c93 100644
--- a/sci-biology/rebase/rebase-1612.ebuild
+++ b/sci-biology/rebase/rebase-1612.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-01-15 19:28 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2017-01-15 19:28 UTC (permalink / raw
To: gentoo-commits
commit: 065a609f1ed78a4b3d6d90344735983718086448
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 15 16:59:40 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 15 19:28:10 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=065a609f
sci-biology/rebase: Drop old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 -
sci-biology/rebase/rebase-1607.ebuild | 46 -----------------------------------
2 files changed, 47 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 00e400e..cc30e16 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,2 @@
-DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
DIST rebase-1612.tar.xz 122519992 SHA256 eb94346564c43244c5959b5948fe59f0ebe9e2590978f1ec8787a3395e918368 SHA512 3936749465f828d1b5922b4c75635a678e2e865cef88084d819291227bd1404e56edbc208e986a7373c32ff0172709cfcb8c4343f8512fbdacf39666f97c5026 WHIRLPOOL 729aa68437b48e3bcbaaf3747feaaf7090a612d2a05658a28ca74b8c58b3227718b0ca9d17a9d5caba42ba02cb6d11fe8bc34796bf385a8310bed2aecae20985
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
diff --git a/sci-biology/rebase/rebase-1607.ebuild b/sci-biology/rebase/rebase-1607.ebuild
deleted file mode 100644
index b058fa9..00000000
--- a/sci-biology/rebase/rebase-1607.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-02-19 18:44 David Seifert
0 siblings, 0 replies; 38+ messages in thread
From: David Seifert @ 2017-02-19 18:44 UTC (permalink / raw
To: gentoo-commits
commit: af430f013067cf302d99a6acd15c923a2293c681
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 18:41:35 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 18:43:33 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=af430f01
sci-biology/rebase: Drop to unstable
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
sci-biology/rebase/rebase-1612.ebuild | 2 +-
sci-biology/rebase/rebase-1701.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/rebase/rebase-1612.ebuild b/sci-biology/rebase/rebase-1612.ebuild
index 7348ae8c78..65d4fbb4d6 100644
--- a/sci-biology/rebase/rebase-1612.ebuild
+++ b/sci-biology/rebase/rebase-1612.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
diff --git a/sci-biology/rebase/rebase-1701.ebuild b/sci-biology/rebase/rebase-1701.ebuild
index f241beaf07..65d4fbb4d6 100644
--- a/sci-biology/rebase/rebase-1701.ebuild
+++ b/sci-biology/rebase/rebase-1701.ebuild
@@ -12,7 +12,7 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="emboss minimal"
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-02-19 18:44 David Seifert
0 siblings, 0 replies; 38+ messages in thread
From: David Seifert @ 2017-02-19 18:44 UTC (permalink / raw
To: gentoo-commits
commit: aa19eee8a41de5940cfb8e8da8e7f60e37559641
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 18:41:36 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 18:43:36 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aa19eee8
sci-biology/rebase: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
sci-biology/rebase/Manifest | 1 -
sci-biology/rebase/rebase-1612.ebuild | 46 -----------------------------------
2 files changed, 47 deletions(-)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index cc30e1674a..8f095bcbb4 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,2 +1 @@
-DIST rebase-1612.tar.xz 122519992 SHA256 eb94346564c43244c5959b5948fe59f0ebe9e2590978f1ec8787a3395e918368 SHA512 3936749465f828d1b5922b4c75635a678e2e865cef88084d819291227bd1404e56edbc208e986a7373c32ff0172709cfcb8c4343f8512fbdacf39666f97c5026 WHIRLPOOL 729aa68437b48e3bcbaaf3747feaaf7090a612d2a05658a28ca74b8c58b3227718b0ca9d17a9d5caba42ba02cb6d11fe8bc34796bf385a8310bed2aecae20985
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
diff --git a/sci-biology/rebase/rebase-1612.ebuild b/sci-biology/rebase/rebase-1612.ebuild
deleted file mode 100644
index 65d4fbb4d6..0000000000
--- a/sci-biology/rebase/rebase-1612.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-02-19 21:03 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2017-02-19 21:03 UTC (permalink / raw
To: gentoo-commits
commit: 9bad2cd4b5c42000945bb87e4b6b2a62a4de6a2d
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 21:03:31 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 21:03:45 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9bad2cd4
sci-biology/rebase: Version Bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1702.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 8f095bcbb4..78e5ed5667 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1 +1,2 @@
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
+DIST rebase-1702.tar.xz 117583312 SHA256 f010388af45a58c9f40270240c65fd5a82a1fce27b1f1eb0d1fbe4b3ffd20966 SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f WHIRLPOOL 70aeede45b1795fc8cc634675381d4458b32445016139d17ac5b9951cf2ff54bbc0fa50d91bf49bbed19d250553275e3c1b15cf0de5149e36d3e1567c74031ec
diff --git a/sci-biology/rebase/rebase-1702.ebuild b/sci-biology/rebase/rebase-1702.ebuild
new file mode 100644
index 0000000000..f241beaf07
--- /dev/null
+++ b/sci-biology/rebase/rebase-1702.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-02-27 20:58 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2017-02-27 20:58 UTC (permalink / raw
To: gentoo-commits
commit: 7528fce17b53eae7fadb405a538dae7d86e0c51d
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 27 20:56:47 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Feb 27 20:56:47 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7528fce1
sci-biology/rebase: Version Bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1703.ebuild | 46 +++++++++++++++++++++++++++++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 78e5ed5667..25a0097b75 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,2 +1,3 @@
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
DIST rebase-1702.tar.xz 117583312 SHA256 f010388af45a58c9f40270240c65fd5a82a1fce27b1f1eb0d1fbe4b3ffd20966 SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f WHIRLPOOL 70aeede45b1795fc8cc634675381d4458b32445016139d17ac5b9951cf2ff54bbc0fa50d91bf49bbed19d250553275e3c1b15cf0de5149e36d3e1567c74031ec
+DIST rebase-1703.tar.xz 122252304 SHA256 dbd5fa2751b693b1babcef9c69a6f7a9e539550aeea712c569dcc0f9a93998e3 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796 WHIRLPOOL b42693781f5faa8a2dbd15204d8f1fc2dc08fb233fa536bd3c0405799059b830c8be214d34f54e2645c8c20e7bd1359882167d175a5026a8acbea29b4f00208c
diff --git a/sci-biology/rebase/rebase-1703.ebuild b/sci-biology/rebase/rebase-1703.ebuild
new file mode 100644
index 0000000000..f241beaf07
--- /dev/null
+++ b/sci-biology/rebase/rebase-1703.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2017-04-23 17:17 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2017-04-23 17:17 UTC (permalink / raw
To: gentoo-commits
commit: 17770b8dbcc2c7e3ddb44f5a22c25688304f0e6a
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Apr 23 17:17:19 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Apr 23 17:17:28 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=17770b8d
sci-biology/rebase: Version Bump
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1704.ebuild | 45 +++++++++++++++++++++++++++++++++++
2 files changed, 46 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 25a0097b757..d3ad3466d24 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,3 +1,4 @@
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
DIST rebase-1702.tar.xz 117583312 SHA256 f010388af45a58c9f40270240c65fd5a82a1fce27b1f1eb0d1fbe4b3ffd20966 SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f WHIRLPOOL 70aeede45b1795fc8cc634675381d4458b32445016139d17ac5b9951cf2ff54bbc0fa50d91bf49bbed19d250553275e3c1b15cf0de5149e36d3e1567c74031ec
DIST rebase-1703.tar.xz 122252304 SHA256 dbd5fa2751b693b1babcef9c69a6f7a9e539550aeea712c569dcc0f9a93998e3 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796 WHIRLPOOL b42693781f5faa8a2dbd15204d8f1fc2dc08fb233fa536bd3c0405799059b830c8be214d34f54e2645c8c20e7bd1359882167d175a5026a8acbea29b4f00208c
+DIST rebase-1704.tar.xz 124351900 SHA256 0622cf14241a4d0d725cb149378d5b2a5aa6094968afcf3f70b8025fba1cfd6b SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7 WHIRLPOOL 161f04c90c1eb290625ff0ee202f78c2b1fb9c60ac5874ca11568927e4f7ea23c6a9fed42a509b1350d0b267ecb8ffa06fa4f1d38e4da0aba28ad540ea749c6c
diff --git a/sci-biology/rebase/rebase-1704.ebuild b/sci-biology/rebase/rebase-1704.ebuild
new file mode 100644
index 00000000000..70694cf2ca8
--- /dev/null
+++ b/sci-biology/rebase/rebase-1704.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2018-03-11 21:27 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2018-03-11 21:27 UTC (permalink / raw
To: gentoo-commits
commit: 18baf890ca547e8d885b8a9c4567d9858a7954d9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 10 16:48:03 2018 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 11 21:27:37 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=18baf890
sci-biology/rebase: Bump to latest release
Package-Manager: Portage-2.3.20, Repoman-2.3.6
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1803.ebuild | 45 +++++++++++++++++++++++++++++++++++
2 files changed, 46 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 1925b3f4b3e..e27e133eac6 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -2,3 +2,4 @@ DIST rebase-1701.tar.xz 120604368 BLAKE2B 1160f494b4e8650fb8ab9144756642377322a2
DIST rebase-1702.tar.xz 117583312 BLAKE2B 19089d5767c35da22fb95bac7bc030ef593b159dda04d512b053a84c1cb4947679c8304bcbcb9388256e92cb0056d16b1b2035efac6eae84831d6fa95bd41a2a SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f
DIST rebase-1703.tar.xz 122252304 BLAKE2B 26afca990e300a5c471f55b1a168b1930212a347b70dd3224a51894bb701540a27a0384bd250caee8e0d0dd4886c6664ab74b20bcfb71fd42d1c73ebf2ce6be6 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796
DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7 SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
+DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
diff --git a/sci-biology/rebase/rebase-1803.ebuild b/sci-biology/rebase/rebase-1803.ebuild
new file mode 100644
index 00000000000..e9944bde30f
--- /dev/null
+++ b/sci-biology/rebase/rebase-1803.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2018-06-09 20:33 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2018-06-09 20:33 UTC (permalink / raw
To: gentoo-commits
commit: a5be401eb7bc3db5dac8d258e6f6f9d4f85cfac4
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 9 20:33:03 2018 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun 9 20:33:20 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a5be401e
sci-biology/rebase: Bump to latest release
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1806.ebuild | 45 +++++++++++++++++++++++++++++++++++
2 files changed, 46 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index e27e133eac6..8eb06d8cba3 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -3,3 +3,4 @@ DIST rebase-1702.tar.xz 117583312 BLAKE2B 19089d5767c35da22fb95bac7bc030ef593b15
DIST rebase-1703.tar.xz 122252304 BLAKE2B 26afca990e300a5c471f55b1a168b1930212a347b70dd3224a51894bb701540a27a0384bd250caee8e0d0dd4886c6664ab74b20bcfb71fd42d1c73ebf2ce6be6 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796
DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7 SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
+DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
diff --git a/sci-biology/rebase/rebase-1806.ebuild b/sci-biology/rebase/rebase-1806.ebuild
new file mode 100644
index 00000000000..e9944bde30f
--- /dev/null
+++ b/sci-biology/rebase/rebase-1806.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2018-10-21 11:55 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2018-10-21 11:55 UTC (permalink / raw
To: gentoo-commits
commit: 100610a395b7ab2f37725af000cb424d1ebac67a
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 21 11:54:58 2018 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Oct 21 11:55:08 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=100610a3
sci-biology/rebase: Version Bump
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1810.ebuild | 45 +++++++++++++++++++++++++++++++++++
2 files changed, 46 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 8eb06d8cba3..0d935c9e58c 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -4,3 +4,4 @@ DIST rebase-1703.tar.xz 122252304 BLAKE2B 26afca990e300a5c471f55b1a168b1930212a3
DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7 SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
+DIST rebase-1810.tar.xz 173538148 BLAKE2B 4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5 SHA512 641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2
diff --git a/sci-biology/rebase/rebase-1810.ebuild b/sci-biology/rebase/rebase-1810.ebuild
new file mode 100644
index 00000000000..e9944bde30f
--- /dev/null
+++ b/sci-biology/rebase/rebase-1810.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2018-12-31 9:44 Justin Lecher
0 siblings, 0 replies; 38+ messages in thread
From: Justin Lecher @ 2018-12-31 9:44 UTC (permalink / raw
To: gentoo-commits
commit: 932a89023ff2348ea6db521bc3a4faacc38854b2
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 30 20:05:15 2018 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Dec 31 09:44:05 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=932a8902
sci-biology/rebase: Version Bump
Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/rebase/Manifest | 1 +
sci-biology/rebase/rebase-1901.ebuild | 45 +++++++++++++++++++++++++++++++++++
2 files changed, 46 insertions(+)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 0d935c9e58c..175ef0c271a 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -5,3 +5,4 @@ DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a99
DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
DIST rebase-1810.tar.xz 173538148 BLAKE2B 4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5 SHA512 641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2
+DIST rebase-1901.tar.xz 182532548 BLAKE2B 5ac8d26ab057bcd21dc9c57abeb226ac70cfabb156b48a51f820789626257be55bb21c9eb2099e6e55b1cfe3691480df0ec9b3f4b18b50ba2712b986c6d057b4 SHA512 1e3553e59c3520190754cb40bb0900e466d9ffd206e6460d3262a7d7d2af8aab0e28f3e60187665362824fa3730211c0e2119016ce5fed49095f9de46c7f25d4
diff --git a/sci-biology/rebase/rebase-1901.ebuild b/sci-biology/rebase/rebase-1901.ebuild
new file mode 100644
index 00000000000..f85a4b1698b
--- /dev/null
+++ b/sci-biology/rebase/rebase-1901.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2022-06-19 18:04 David Seifert
0 siblings, 0 replies; 38+ messages in thread
From: David Seifert @ 2022-06-19 18:04 UTC (permalink / raw
To: gentoo-commits
commit: 4de3a1e7db21aa87998de78257a767004750f415
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 19 18:04:31 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 19 18:04:31 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4de3a1e7
sci-biology/rebase: update EAPI 6 -> 8
Signed-off-by: David Seifert <soap <AT> gentoo.org>
.../{rebase-1901.ebuild => rebase-1901-r1.ebuild} | 22 +++++++++++-----------
1 file changed, 11 insertions(+), 11 deletions(-)
diff --git a/sci-biology/rebase/rebase-1901.ebuild b/sci-biology/rebase/rebase-1901-r1.ebuild
similarity index 79%
rename from sci-biology/rebase/rebase-1901.ebuild
rename to sci-biology/rebase/rebase-1901-r1.ebuild
index f85a4b1698bb..a993a8c2c44a 100644
--- a/sci-biology/rebase/rebase-1901.ebuild
+++ b/sci-biology/rebase/rebase-1901-r1.ebuild
@@ -1,32 +1,32 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=8
-MY_PV=${PV#1}
+MY_PV="${PV#1}"
DESCRIPTION="A restriction enzyme database"
HOMEPAGE="http://rebase.neb.com"
SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-SLOT="0"
LICENSE="public-domain"
+SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
RESTRICT="binchecks strip"
+BDEPEND="emboss? ( sci-biology/emboss )"
+REPEND="${BDEPEND}"
+
src_compile() {
if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
+ einfo
+ einfo "Indexing Rebase for usage with EMBOSS"
mkdir REBASE || die
EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
+ || die "Indexing Rebase failed"
+ einfo
fi
}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
@ 2022-07-09 3:09 Sam James
0 siblings, 0 replies; 38+ messages in thread
From: Sam James @ 2022-07-09 3:09 UTC (permalink / raw
To: gentoo-commits
commit: 23c069aa8b04e0767518562cd6c4147bbc203920
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 9 03:08:42 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sat Jul 9 03:08:42 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=23c069aa
sci-biology/rebase: fix RDEPEND typo
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-biology/rebase/{rebase-1901-r1.ebuild => rebase-1901-r2.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/rebase/rebase-1901-r1.ebuild b/sci-biology/rebase/rebase-1901-r2.ebuild
similarity index 98%
rename from sci-biology/rebase/rebase-1901-r1.ebuild
rename to sci-biology/rebase/rebase-1901-r2.ebuild
index a993a8c2c44a..1b4b75407947 100644
--- a/sci-biology/rebase/rebase-1901-r1.ebuild
+++ b/sci-biology/rebase/rebase-1901-r2.ebuild
@@ -16,7 +16,7 @@ IUSE="emboss minimal"
RESTRICT="binchecks strip"
BDEPEND="emboss? ( sci-biology/emboss )"
-REPEND="${BDEPEND}"
+RDEPEND="${BDEPEND}"
src_compile() {
if use emboss; then
^ permalink raw reply related [flat|nested] 38+ messages in thread
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