* [gentoo-commits] repo/gentoo:master commit in: sci-biology/aaindex/
@ 2017-02-19 18:44 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2017-02-19 18:44 UTC (permalink / raw
To: gentoo-commits
commit: 1cf704486877e93b8ac045849aa1821004914eea
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 18:41:35 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 18:43:19 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1cf70448
sci-biology/aaindex: Drop to unstable
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
sci-biology/aaindex/aaindex-9.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/aaindex/aaindex-9.1.ebuild b/sci-biology/aaindex/aaindex-9.1.ebuild
index b0a4a97454..5212990237 100644
--- a/sci-biology/aaindex/aaindex-9.1.ebuild
+++ b/sci-biology/aaindex/aaindex-9.1.ebuild
@@ -11,7 +11,7 @@ SLOT="0"
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
DEPEND="emboss? ( sci-biology/emboss )"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/aaindex/
@ 2017-02-25 19:19 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2017-02-25 19:19 UTC (permalink / raw
To: gentoo-commits
commit: 3d418275c8a40e60d41b0839b830a9703181213d
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 25 17:27:08 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Feb 25 19:18:02 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3d418275
sci-biology/aaindex: Modernise to EAPI 6
Package-Manager: Portage-2.3.3, Repoman-2.3.1
.../{aaindex-9.1.ebuild => aaindex-9.1-r1.ebuild} | 26 ++++++++++++----------
1 file changed, 14 insertions(+), 12 deletions(-)
diff --git a/sci-biology/aaindex/aaindex-9.1.ebuild b/sci-biology/aaindex/aaindex-9.1-r1.ebuild
similarity index 67%
rename from sci-biology/aaindex/aaindex-9.1.ebuild
rename to sci-biology/aaindex/aaindex-9.1-r1.ebuild
index 5212990237..50b59535db 100644
--- a/sci-biology/aaindex/aaindex-9.1.ebuild
+++ b/sci-biology/aaindex/aaindex-9.1-r1.ebuild
@@ -2,40 +2,42 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
+EAPI=6
+
DESCRIPTION="Amino acid indices and similarity matrices"
-LICENSE="public-domain"
-HOMEPAGE="http://www.genome.ad.jp/aaindex"
+HOMEPAGE="http://www.genome.jp/aaindex/"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
SLOT="0"
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="emboss minimal"
DEPEND="emboss? ( sci-biology/emboss )"
-
RDEPEND="${DEPEND}"
src_compile() {
if use emboss; then
- mkdir AAINDEX
- echo
+ mkdir AAINDEX || die
+ einfo
einfo "Indexing AAindex for usage with EMBOSS."
- EMBOSS_DATA="." aaindexextract -auto -infile ${PN}1 || die \
- "Indexing AAindex failed."
- echo
+ EMBOSS_DATA="." aaindexextract -auto -infile ${PN}1 || die "Indexing AAindex failed"
+ einfo
fi
}
src_install() {
+ dodoc ${PN}.doc
+
if ! use minimal; then
insinto /usr/share/${PN}
- doins ${PN}{1,2,3} || die "Failed to install raw database."
+ doins ${PN}{1,2,3}
fi
- dodoc ${PN}.doc || die "Failed to install documentation."
+
if use emboss; then
insinto /usr/share/EMBOSS/data/AAINDEX
- doins AAINDEX/* || die "Failed to install EMBOSS data files."
+ doins -r AAINDEX/.
fi
}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/aaindex/
@ 2018-06-09 14:09 Aaron Bauman
0 siblings, 0 replies; 4+ messages in thread
From: Aaron Bauman @ 2018-06-09 14:09 UTC (permalink / raw
To: gentoo-commits
commit: 60a1a3bb4d18539d69ebdfaee604934e027fad0a
Author: Michael Mair-Keimberger <m.mairkeimberger <AT> gmail <DOT> com>
AuthorDate: Fri Jun 1 16:44:52 2018 +0000
Commit: Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Sat Jun 9 14:08:55 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=60a1a3bb
sci-biology/aaindex: use HTTPs
sci-biology/aaindex/aaindex-9.1-r1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/aaindex/aaindex-9.1-r1.ebuild b/sci-biology/aaindex/aaindex-9.1-r1.ebuild
index 068902e96fa..b51f64beaef 100644
--- a/sci-biology/aaindex/aaindex-9.1-r1.ebuild
+++ b/sci-biology/aaindex/aaindex-9.1-r1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="Amino acid indices and similarity matrices"
-HOMEPAGE="http://www.genome.jp/aaindex/"
+HOMEPAGE="https://www.genome.jp/aaindex/"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="public-domain"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/aaindex/
@ 2022-06-19 18:04 David Seifert
0 siblings, 0 replies; 4+ messages in thread
From: David Seifert @ 2022-06-19 18:04 UTC (permalink / raw
To: gentoo-commits
commit: ae1ce18086a1663caaef3d265ae003288305b80b
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 19 18:04:33 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 19 18:04:33 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ae1ce180
sci-biology/aaindex: update EAPI 6 -> 8
Signed-off-by: David Seifert <soap <AT> gentoo.org>
.../aaindex/{aaindex-9.1-r1.ebuild => aaindex-9.1-r2.ebuild} | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/sci-biology/aaindex/aaindex-9.1-r1.ebuild b/sci-biology/aaindex/aaindex-9.1-r2.ebuild
similarity index 83%
rename from sci-biology/aaindex/aaindex-9.1-r1.ebuild
rename to sci-biology/aaindex/aaindex-9.1-r2.ebuild
index b51f64beaefc..76b95ddb1bcf 100644
--- a/sci-biology/aaindex/aaindex-9.1-r1.ebuild
+++ b/sci-biology/aaindex/aaindex-9.1-r2.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=8
DESCRIPTION="Amino acid indices and similarity matrices"
HOMEPAGE="https://www.genome.jp/aaindex/"
@@ -14,14 +14,14 @@ SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="emboss minimal"
-DEPEND="emboss? ( sci-biology/emboss )"
-RDEPEND="${DEPEND}"
+BDEPEND="emboss? ( sci-biology/emboss )"
+RDEPEND="${BDEPEND}"
src_compile() {
if use emboss; then
mkdir AAINDEX || die
einfo
- einfo "Indexing AAindex for usage with EMBOSS."
+ einfo "Indexing AAindex for usage with EMBOSS"
EMBOSS_DATA="." aaindexextract -auto -infile ${PN}1 || die "Indexing AAindex failed"
einfo
fi
^ permalink raw reply related [flat|nested] 4+ messages in thread
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