From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id ECDE4139694 for ; Sun, 19 Feb 2017 00:54:44 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2CA48E0BC5; Sun, 19 Feb 2017 00:54:44 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id EDB25E0BC5 for ; Sun, 19 Feb 2017 00:54:43 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id BC2B43409C1 for ; Sun, 19 Feb 2017 00:54:42 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 35F944CAD for ; Sun, 19 Feb 2017 00:54:41 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1487465674.7c9d1fc1ef91728d38504e7c07a363d4b397ca3d.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tablet/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/tablet/tablet-1.14.04.10.ebuild sci-biology/tablet/tablet-1.15.09.01.ebuild sci-biology/tablet/tablet-1.16.09.06.ebuild sci-biology/tablet/tablet-9999.ebuild X-VCS-Directories: sci-biology/tablet/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 7c9d1fc1ef91728d38504e7c07a363d4b397ca3d X-VCS-Branch: master Date: Sun, 19 Feb 2017 00:54:41 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 6b061e45-e39e-4baf-9a94-03c29214cdec X-Archives-Hash: 521265bf53e4fe75db39021af168a8ff commit: 7c9d1fc1ef91728d38504e7c07a363d4b397ca3d Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Feb 19 00:54:34 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Feb 19 00:54:34 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7c9d1fc1 sci-biology/tablet: version bump Fix required java version to 1.8 Seems 1.16.09.06 is under upstream's SVN commit #876. Package-Manager: Portage-2.3.3, Repoman-2.3.1 ...-1.14.04.10.ebuild => tablet-1.15.09.01.ebuild} | 24 ++++++++++++---------- ...-1.14.04.10.ebuild => tablet-1.16.09.06.ebuild} | 6 +++--- sci-biology/tablet/tablet-9999.ebuild | 8 ++++---- 3 files changed, 20 insertions(+), 18 deletions(-) diff --git a/sci-biology/tablet/tablet-1.14.04.10.ebuild b/sci-biology/tablet/tablet-1.15.09.01.ebuild similarity index 67% copy from sci-biology/tablet/tablet-1.14.04.10.ebuild copy to sci-biology/tablet/tablet-1.15.09.01.ebuild index d8aa02c19..2d30b71bb 100644 --- a/sci-biology/tablet/tablet-1.14.04.10.ebuild +++ b/sci-biology/tablet/tablet-1.15.09.01.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -18,7 +18,7 @@ if [ "$PV" == "9999" ]; then KEYWORDS="" else ESVN_REPO_URI="http://ics.hutton.ac.uk/svn/tablet/tags/${PV}" - KEYWORDS="" + KEYWORDS="~amd64 ~x86" fi LICENSE="Tablet" @@ -28,9 +28,9 @@ IUSE="" REQUIRED_USE="${PYTHON_REQUIRED_USE}" DEPEND="${PYTHON_DEPS} - >=virtual/jdk-1.7:*" + >=virtual/jdk-1.8:*" RDEPEND="${PYTHON_DEPS} - >=virtual/jre-1.7:* + >=virtual/jre-1.8:* sci-biology/samtools sci-biology/picard dev-db/sqlite:3" @@ -38,12 +38,14 @@ RDEPEND="${PYTHON_DEPS} S="${WORKDIR}" src_install() { - java-pkg_dojar lib/tablet-resources.jar - java-pkg_dojar lib/tablet.jar - java-pkg_dojar lib/flamingo.jar - java-pkg_dojar lib/scri-commons.jar - java-pkg_dojar lib/samtools*.jar - - echo "PATH=${EPREFIX}/opt/Tablet" > 99Tablet + cd lib || die + java-pkg_dojar tablet.jar + java-pkg_dolauncher ${PN} + java-pkg_dojar tablet-resources.jar + java-pkg_dojar flamingo.jar + java-pkg_dojar scri-commons.jar + java-pkg_dojar samtools*.jar + + echo "PATH=${EPREFIX}/usr/share/${PN}/" > 99Tablet doenvd 99Tablet } diff --git a/sci-biology/tablet/tablet-1.14.04.10.ebuild b/sci-biology/tablet/tablet-1.16.09.06.ebuild similarity index 92% rename from sci-biology/tablet/tablet-1.14.04.10.ebuild rename to sci-biology/tablet/tablet-1.16.09.06.ebuild index d8aa02c19..c4be1406f 100644 --- a/sci-biology/tablet/tablet-1.14.04.10.ebuild +++ b/sci-biology/tablet/tablet-1.16.09.06.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -28,9 +28,9 @@ IUSE="" REQUIRED_USE="${PYTHON_REQUIRED_USE}" DEPEND="${PYTHON_DEPS} - >=virtual/jdk-1.7:*" + >=virtual/jdk-1.8:*" RDEPEND="${PYTHON_DEPS} - >=virtual/jre-1.7:* + >=virtual/jre-1.8:* sci-biology/samtools sci-biology/picard dev-db/sqlite:3" diff --git a/sci-biology/tablet/tablet-9999.ebuild b/sci-biology/tablet/tablet-9999.ebuild index d8aa02c19..f5846c8ef 100644 --- a/sci-biology/tablet/tablet-9999.ebuild +++ b/sci-biology/tablet/tablet-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -28,9 +28,9 @@ IUSE="" REQUIRED_USE="${PYTHON_REQUIRED_USE}" DEPEND="${PYTHON_DEPS} - >=virtual/jdk-1.7:*" + >=virtual/jdk-1.8:*" RDEPEND="${PYTHON_DEPS} - >=virtual/jre-1.7:* + >=virtual/jre-1.8:* sci-biology/samtools sci-biology/picard dev-db/sqlite:3" @@ -44,6 +44,6 @@ src_install() { java-pkg_dojar lib/scri-commons.jar java-pkg_dojar lib/samtools*.jar - echo "PATH=${EPREFIX}/opt/Tablet" > 99Tablet + echo "PATH=${EPREFIX}/usr/share/${PN}" > 99Tablet doenvd 99Tablet }