From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id F0610139694 for ; Thu, 16 Feb 2017 09:53:56 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2085BE0C64; Thu, 16 Feb 2017 09:53:55 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id EE29AE0C64 for ; Thu, 16 Feb 2017 09:53:53 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 53602340FC1 for ; Thu, 16 Feb 2017 09:53:52 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id B692149AF for ; Thu, 16 Feb 2017 09:53:50 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1487238814.5f3f4d9525b701b6643ecbdfa3835051201c6e25.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/freebayes/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/freebayes/freebayes-9999.ebuild X-VCS-Directories: sci-biology/freebayes/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 5f3f4d9525b701b6643ecbdfa3835051201c6e25 X-VCS-Branch: master Date: Thu, 16 Feb 2017 09:53:50 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 2cbc1c34-2cd8-45a4-be14-2f5acb09de56 X-Archives-Hash: a6f77cdf9e901552f974792f62688bff commit: 5f3f4d9525b701b6643ecbdfa3835051201c6e25 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Feb 16 09:53:34 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Feb 16 09:53:34 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f3f4d95 sci-biology/freebayes: force compilation in a single thread as parallel build fails Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/freebayes/freebayes-9999.ebuild | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/sci-biology/freebayes/freebayes-9999.ebuild b/sci-biology/freebayes/freebayes-9999.ebuild index b4eee4419..1b1eb89ed 100644 --- a/sci-biology/freebayes/freebayes-9999.ebuild +++ b/sci-biology/freebayes/freebayes-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -84,6 +84,10 @@ RDEPEND="${DEPEND} # g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../ttmath -I../bamtools/src/ -I../vcflib/src/ -I../vcflib/tabixpp/ -I../vcflib/smithwaterman/ -I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/tabixpp/htslib -I../SeqLib -I../SeqLib/htslib -c freebayes.cpp +src_compile(){ + emake -j1 # vcflib/smithwaterman/ sometimes does not compile +} + src_install(){ dobin bin/freebayes bin/bamleftalign }