* [gentoo-commits] repo/gentoo:master commit in: sci-biology/psipred/
@ 2017-02-14 23:40 Manuel Rüger
0 siblings, 0 replies; 3+ messages in thread
From: Manuel Rüger @ 2017-02-14 23:40 UTC (permalink / raw
To: gentoo-commits
commit: dcd46063e91b45f60d135447ea6d322002322b18
Author: Manuel Rüger <mrueg <AT> gentoo <DOT> org>
AuthorDate: Tue Feb 14 23:39:54 2017 +0000
Commit: Manuel Rüger <mrueg <AT> gentoo <DOT> org>
CommitDate: Tue Feb 14 23:39:54 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dcd46063
sci-biology/psipred: Remove old
Package-Manager: portage-2.3.3
sci-biology/psipred/Manifest | 2 --
sci-biology/psipred/psipred-3.1.ebuild | 51 ----------------------------------
sci-biology/psipred/psipred-3.2.ebuild | 51 ----------------------------------
3 files changed, 104 deletions(-)
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index 1c17d7b94a..4b0dd552e4 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -1,7 +1,5 @@
DIST psipred3.3.tar.gz 1239746 SHA256 133eef16ba4ac6ff5e10a757290ef794552833f42ed8251ff866ae56d9527c40 SHA512 38f5dd0f6eb6fc38888f9a850604b95904a8626d6862eb0b2a389caaf49af8f81436aa78a087da22281113d8afad2d28e5109ddade7d17718c1028eed8325b7e WHIRLPOOL d3883df88bde12a0f5ba6e195dc37b7104db36d16b5846b978fb045def6c4452edce4361dcced27ed36937bbd8d0e8dd4391b8592dca390941b3450e49cc5d34
DIST psipred3.4.tar.gz 1102416 SHA256 c0eb8877313eb0564d34fc4d0e2d8d22e09d84d245e41008227560a10e64da9d SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919 WHIRLPOOL bdb47f296db1172df08f84b8cf18782e8585a8bc49f190b9783192db0e9d632bd6660437e8a35c24bb5970ca7a556b368c5a93373772f20d4be9a98ef963b902
DIST psipred3.5.tar.gz 1101579 SHA256 107979a6bee968ba1df1ac1ee63bc1611105b83a7d519ab814f848ed955b76d8 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2 WHIRLPOOL fb07fdf550af6c9942e131a4856942c74adb3a7954c433ac7bc27680d9ab2b3db82a5178a15bcea224f7bb0da3cd84c94a4e9188be4fcbd49851037f631732e3
-DIST psipred31.tar.gz 746797 SHA256 2150696cae281bc942a18fc5f1e2057ed70cb6ee7b492c9594cbd99b8f6987dd SHA512 a04482fc5a08de03b2c1ac3eafbc289d476906811ef2557681f00e3ba865488c6061a194c5e12fe3ff38d31f42f13f4e783de1ca4a04508dd38a93c3ad848710 WHIRLPOOL 288d161698726a944b40acb3e2c355e61bad3644bf5edca40fd5e478f9d37e3acc9a91ee199fbadea680ab3a8c974eb8f80dd700dfe790e84d8a862148538dff
-DIST psipred32.tar.gz 747120 SHA256 0775b0f07df87b2afd4989a378fc9b47f462507a264aaf2d56dd0243d9d00343 SHA512 49660d1c3cb9aa4c3ab13e721e23b83d70d0b6ecb772b08bd1058d3293dbcc9642d63092dd9746aa2a3a9085a13ba91e9849172d36954228a4f7a16e6e81050d WHIRLPOOL 24413200771fcee89c123fad25033b3230de3fdd82016ad7d084ddb096c081c46537f35c06578dad84a79a62c493e03b8f7b51be296b04d9568ea00b94293360
DIST psipred321.tar.gz 747151 SHA256 5e88f2402e333be401b3022937b0167a33203f6289a84dd344941546f550f1f8 SHA512 b742f5fd3151bd624452bf37761fa66d364ea5b28d9d005ae6ce6f52fc6f2b17df31d6f1e600bd6c57776a1812f22b1eafbca781b430811a010d74f157a75cd1 WHIRLPOOL bb7111851ffe533b30fd6b77fb1ae396f0dd6506ce941944974c3b5c73c41d1a5b04c5af3d7e697aeb0640c03168b78d8832747940ed0de087df784d2d27e9f1
DIST tdbdata.tar.gz 40241247 SHA256 87b7743538898f6cdf89cc5c18e1ecd040bc6223a01821d2bfc3109f4571851f SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c WHIRLPOOL 37bc0912c6a71d1396489161465c690fb63d28167694d2e43553b6684c1f1f88866b2bf71f9531c7a7f41fc8ca81a6c93c2895ed498a07e3c4836f8c8bf4a34e
diff --git a/sci-biology/psipred/psipred-3.1.ebuild b/sci-biology/psipred/psipred-3.1.ebuild
deleted file mode 100644
index b81c4149b5..0000000000
--- a/sci-biology/psipred/psipred-3.1.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-inherit eutils prefix toolchain-funcs versionator
-
-MY_P="${PN}$(delete_all_version_separators)"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
-DEPEND=""
-
-S="${WORKDIR}"
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/${PV}-Makefile.patch \
- "${FILESDIR}"/${PV}-path.patch \
- "${FILESDIR}"/${PV}-fgets.patch
- eprefixify runpsipred*
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC) || die "emake failed"
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install || die "installation failed"
- dobin runpsipred* bin/* BLAST+/runpsipred* || die
- insinto /usr/share/${PN}
- doins -r data || die "failed to install data"
- dodoc README || die "nothing to read"
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
diff --git a/sci-biology/psipred/psipred-3.2.ebuild b/sci-biology/psipred/psipred-3.2.ebuild
deleted file mode 100644
index 418179c412..0000000000
--- a/sci-biology/psipred/psipred-3.2.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-inherit eutils prefix toolchain-funcs versionator
-
-MY_P="${PN}$(delete_all_version_separators)"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
-DEPEND=""
-
-S="${WORKDIR}"
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/${PV}-fgets.patch
- eprefixify runpsipred*
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC) || die "emake failed"
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install || die "installation failed"
- dobin runpsipred* bin/* BLAST+/runpsipred* || die
- insinto /usr/share/${PN}
- doins -r data || die "failed to install data"
- dodoc README || die "nothing to read"
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/psipred/
@ 2018-08-26 18:22 Michał Górny
0 siblings, 0 replies; 3+ messages in thread
From: Michał Górny @ 2018-08-26 18:22 UTC (permalink / raw
To: gentoo-commits
commit: 0cc6f583a6271a6d8d8b3e78ce6d0c042472a703
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 26 18:05:41 2018 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Aug 26 18:22:13 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0cc6f583
sci-biology/psipred: Remove support for non-existent deps
sci-biology/psipred/psipred-3.2.1.ebuild | 4 ++--
sci-biology/psipred/psipred-3.3.ebuild | 4 ++--
sci-biology/psipred/psipred-3.4.ebuild | 4 ++--
sci-biology/psipred/psipred-3.5.ebuild | 4 ++--
4 files changed, 8 insertions(+), 8 deletions(-)
diff --git a/sci-biology/psipred/psipred-3.2.1.ebuild b/sci-biology/psipred/psipred-3.2.1.ebuild
index 556b98801f3..1bcb5874463 100644
--- a/sci-biology/psipred/psipred-3.2.1.ebuild
+++ b/sci-biology/psipred/psipred-3.2.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=4
@@ -18,7 +18,7 @@ IUSE="test"
RDEPEND="
sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
+ sci-biology/update-blastdb"
DEPEND=""
S="${WORKDIR}"
diff --git a/sci-biology/psipred/psipred-3.3.ebuild b/sci-biology/psipred/psipred-3.3.ebuild
index 16c7fbd503a..4e0b0102837 100644
--- a/sci-biology/psipred/psipred-3.3.ebuild
+++ b/sci-biology/psipred/psipred-3.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=4
@@ -21,7 +21,7 @@ IUSE="test"
RDEPEND="
sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
+ sci-biology/update-blastdb"
DEPEND=""
S="${WORKDIR}"/${PN}
diff --git a/sci-biology/psipred/psipred-3.4.ebuild b/sci-biology/psipred/psipred-3.4.ebuild
index 7b71d435ae2..d1d6a547d17 100644
--- a/sci-biology/psipred/psipred-3.4.ebuild
+++ b/sci-biology/psipred/psipred-3.4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -22,7 +22,7 @@ IUSE="test"
RDEPEND="
app-shells/tcsh
sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
+ sci-biology/update-blastdb"
DEPEND=""
S="${WORKDIR}"/${PN}
diff --git a/sci-biology/psipred/psipred-3.5.ebuild b/sci-biology/psipred/psipred-3.5.ebuild
index 7b71d435ae2..d1d6a547d17 100644
--- a/sci-biology/psipred/psipred-3.5.ebuild
+++ b/sci-biology/psipred/psipred-3.5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -22,7 +22,7 @@ IUSE="test"
RDEPEND="
app-shells/tcsh
sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
+ sci-biology/update-blastdb"
DEPEND=""
S="${WORKDIR}"/${PN}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/psipred/
@ 2019-11-24 3:21 Aaron Bauman
0 siblings, 0 replies; 3+ messages in thread
From: Aaron Bauman @ 2019-11-24 3:21 UTC (permalink / raw
To: gentoo-commits
commit: fb621d2dda799c17834b978fccc3b4073b828761
Author: Aaron Bauman <bman <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 24 03:09:28 2019 +0000
Commit: Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Sun Nov 24 03:21:41 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fb621d2d
sci-biology/psipred: drop old EAPI
Signed-off-by: Aaron Bauman <bman <AT> gentoo.org>
sci-biology/psipred/Manifest | 2 --
sci-biology/psipred/psipred-3.2.1.ebuild | 51 ------------------------------
sci-biology/psipred/psipred-3.3.ebuild | 54 --------------------------------
3 files changed, 107 deletions(-)
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index c3e796709fc..3dfae4734db 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -1,5 +1,3 @@
-DIST psipred3.3.tar.gz 1239746 BLAKE2B b1afa9a6a85f239e02b5affec3a6ff48281f962b94b5b6e5c2f4da496a8f73b3d5103a3e77908976a6423eebcfc4e54d2bcb8f7ab012859a115d6f21d580e9d2 SHA512 38f5dd0f6eb6fc38888f9a850604b95904a8626d6862eb0b2a389caaf49af8f81436aa78a087da22281113d8afad2d28e5109ddade7d17718c1028eed8325b7e
DIST psipred3.4.tar.gz 1102416 BLAKE2B 9797f4181357bb26455253370aca39857c39a2c4bcd521b10a139784e6fd5dc9e14b76c11d99989ac33c3a01fb62807957f9969daa5ac9d928b0b4e83e943743 SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919
DIST psipred3.5.tar.gz 1101579 BLAKE2B 2fd86841cbc4bb86045b51f8283550832df8356ee88a6ef2c85281b5810debb23ac53652ddc5ffc9bd6f8e9e7248ce39ccee23400ff8fb49cd05b877d730b553 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2
-DIST psipred321.tar.gz 747151 BLAKE2B 8b58a2c45efc92e049622784e1ca39a622ecfb5f660554cf3a26ab9a7e85feb3e453935fca12f0a68328e5e736becdae737f80407730ea9315f4e79b19f71e8b SHA512 b742f5fd3151bd624452bf37761fa66d364ea5b28d9d005ae6ce6f52fc6f2b17df31d6f1e600bd6c57776a1812f22b1eafbca781b430811a010d74f157a75cd1
DIST tdbdata.tar.gz 40241247 BLAKE2B c85a2fde9b29a14e1da27be1a7ea5fe1704f72b66cd79514dd50a3a0d2d8aab9341f7d5075f6d1896cefa54ca83948387b902b38780181777dc505a9a15b4aab SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c
diff --git a/sci-biology/psipred/psipred-3.2.1.ebuild b/sci-biology/psipred/psipred-3.2.1.ebuild
deleted file mode 100644
index 1bcb5874463..00000000000
--- a/sci-biology/psipred/psipred-3.2.1.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils prefix toolchain-funcs versionator
-
-MY_P="${PN}$(delete_all_version_separators)"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
- sci-biology/ncbi-tools
- sci-biology/update-blastdb"
-DEPEND=""
-
-S="${WORKDIR}"
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/3.2-fgets.patch
- eprefixify runpsipred*
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC)
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install
- dobin runpsipred* bin/* BLAST+/runpsipred*
- insinto /usr/share/${PN}
- doins -r data
- dodoc README
- newdoc BLAST+/README README-blast
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
diff --git a/sci-biology/psipred/psipred-3.3.ebuild b/sci-biology/psipred/psipred-3.3.ebuild
deleted file mode 100644
index 4e0b0102837..00000000000
--- a/sci-biology/psipred/psipred-3.3.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils prefix toolchain-funcs versionator
-
-#MY_P="${PN}$(delete_all_version_separators)"
-MY_P="${PN}${PV}"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="
- http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz
- test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
- sci-biology/ncbi-tools
- sci-biology/update-blastdb"
-DEPEND=""
-
-S="${WORKDIR}"/${PN}
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/3.2-fgets.patch
- eprefixify runpsipred*
- emake -C src clean
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC)
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install
- dobin runpsipred* bin/* BLAST+/runpsipred*
- insinto /usr/share/${PN}
- doins -r data
- dodoc README
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
^ permalink raw reply related [flat|nested] 3+ messages in thread
end of thread, other threads:[~2019-11-24 3:21 UTC | newest]
Thread overview: 3+ messages (download: mbox.gz follow: Atom feed
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2017-02-14 23:40 [gentoo-commits] repo/gentoo:master commit in: sci-biology/psipred/ Manuel Rüger
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2018-08-26 18:22 Michał Górny
2019-11-24 3:21 Aaron Bauman
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