[gentoo-commits] repo/gentoo:master commit in: sci-biology/maq/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/maq/

[David Seifert]

commit:     d7d5cbd1accca7aac9aec6ebc2f33a4fd3a989c0
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb  6 20:48:02 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb  6 21:26:28 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d7d5cbd1

sci-biology/maq: Fix overlong DESCRIPTION

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3856

 sci-biology/maq/maq-0.7.1-r1.ebuild | 4 ++--
 sci-biology/maq/maq-0.7.1.ebuild    | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/maq/maq-0.7.1-r1.ebuild b/sci-biology/maq/maq-0.7.1-r1.ebuild
index 645a2d6..1fd699b 100644
--- a/sci-biology/maq/maq-0.7.1-r1.ebuild
+++ b/sci-biology/maq/maq-0.7.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -6,7 +6,7 @@ EAPI=4
 
 inherit autotools eutils
 
-DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
+DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
 HOMEPAGE="http://maq.sourceforge.net/"
 SRC_URI="
 	mirror://sourceforge/${PN}/${P}.tar.bz2

diff --git a/sci-biology/maq/maq-0.7.1.ebuild b/sci-biology/maq/maq-0.7.1.ebuild
index 1089eef..1f8df1f 100644
--- a/sci-biology/maq/maq-0.7.1.ebuild
+++ b/sci-biology/maq/maq-0.7.1.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
+DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
 HOMEPAGE="http://maq.sourceforge.net/"
 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2
 	mirror://sourceforge/${PN}/calib-36.dat.gz"

[gentoo-commits] repo/gentoo:master commit in: sci-biology/maq/

[David Seifert]

commit:     51d123886275dc5e4a3b91fbac47600d4da7f196
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb  6 20:48:02 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb  6 21:26:41 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=51d12388

sci-biology/maq: Remove old

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3856

 sci-biology/maq/maq-0.7.1-r1.ebuild | 40 -------------------------------------
 sci-biology/maq/maq-0.7.1.ebuild    | 24 ----------------------
 2 files changed, 64 deletions(-)

diff --git a/sci-biology/maq/maq-0.7.1-r1.ebuild b/sci-biology/maq/maq-0.7.1-r1.ebuild
deleted file mode 100644
index 1fd699b..00000000
--- a/sci-biology/maq/maq-0.7.1-r1.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-inherit autotools eutils
-
-DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
-HOMEPAGE="http://maq.sourceforge.net/"
-SRC_URI="
-	mirror://sourceforge/${PN}/${P}.tar.bz2
-	mirror://sourceforge/${PN}/calib-36.dat.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-
-RDEPEND="sys-libs/zlib"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P}-flags.patch \
-		"${FILESDIR}"/${P}-bfr-overfl.patch \
-		"${FILESDIR}"/${P}-gcc-4.7.patch
-	sed \
-		-e '/ext_CFLAGS/s:-m64::g' \
-		-i configure* || die
-	eautoreconf
-}
-
-src_install() {
-	default
-	insinto /usr/share/maq
-	doins "${WORKDIR}"/*.dat
-	doman maq.1
-	dodoc ${PN}.pdf
-}

diff --git a/sci-biology/maq/maq-0.7.1.ebuild b/sci-biology/maq/maq-0.7.1.ebuild
deleted file mode 100644
index 1f8df1f..00000000
--- a/sci-biology/maq/maq-0.7.1.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
-HOMEPAGE="http://maq.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2
-	mirror://sourceforge/${PN}/calib-36.dat.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND=""
-RDEPEND=""
-
-src_install() {
-	emake DESTDIR="${D}" install || die
-	insinto /usr/share/maq
-	doins "${WORKDIR}"/*.dat || die
-	doman maq.1
-	dodoc AUTHORS ChangeLog NEWS maq.pdf
-}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/maq/

[David Seifert]

commit:     143679d55a9c805e3c246b88f4afbef030a29c6b
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jul  7 19:57:00 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jul  7 19:57:00 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=143679d5

sci-biology/maq: update EAPI 6 -> 8

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/maq/{maq-0.7.1-r2.ebuild => maq-0.7.1-r3.ebuild} | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/sci-biology/maq/maq-0.7.1-r2.ebuild b/sci-biology/maq/maq-0.7.1-r3.ebuild
similarity index 87%
rename from sci-biology/maq/maq-0.7.1-r2.ebuild
rename to sci-biology/maq/maq-0.7.1-r3.ebuild
index 14b0284b7f58..a64b2b6f4e81 100644
--- a/sci-biology/maq/maq-0.7.1-r2.ebuild
+++ b/sci-biology/maq/maq-0.7.1-r3.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=8
 
 inherit autotools
 
@@ -13,7 +13,6 @@ SRC_URI="
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE=""
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 
 RDEPEND="sys-libs/zlib"
@@ -34,9 +33,9 @@ src_prepare() {
 src_install() {
 	default
 
-	insinto /usr/share/${PN}
+	insinto /usr/share/maq
 	doins "${WORKDIR}"/*.dat
 
 	doman maq.1
-	dodoc ${PN}.pdf
+	dodoc maq.pdf
 }