[gentoo-commits] proj/sci:master commit in: sci-biology/trf-bin/

[gentoo-commits] proj/sci:master commit in: sci-biology/trf-bin/

[Martin Mokrejs]

commit:     b76cf5c916507cdfbbff2f66eff61a52c4e896cb
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 31 17:42:08 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 31 17:42:08 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b76cf5c9

sci-biology/trf-bin: reintroduce a symlink from /opt/bin/$MY_PN

The /opt/$MY_PN/bin/ is not in PATH by default so helps other
tools to find trf installation easily

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/trf-bin/trf-bin-4.09.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-biology/trf-bin/trf-bin-4.09.ebuild b/sci-biology/trf-bin/trf-bin-4.09.ebuild
index 11fae9c..facc411 100644
--- a/sci-biology/trf-bin/trf-bin-4.09.ebuild
+++ b/sci-biology/trf-bin/trf-bin-4.09.ebuild
@@ -38,6 +38,7 @@ src_unpack() {
 src_install() {
 	exeinto /opt/"${MY_PN}"/bin
 	doexe "${MY_PN}"
+	dosym /opt/"${MY_PN}"/bin/"${MY_PN}" /opt/bin/"${MY_PN}"
 	# GTK version (http://tandem.bu.edu/trf/downloads/trf400.linuxgtk.exe) has broken linking
 	#if use gtk; then
 	#	doexe trf400.linuxgtk.exe

[gentoo-commits] proj/sci:master commit in: sci-biology/trf-bin/

[Martin Mokrejs]

commit:     4f4a29755428bdb79acb16a0c2f331a44f326f49
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 31 17:47:36 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 31 17:47:36 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f4a2975

sci-biology/trf-bin: trf binary needs glibc-2.14

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/trf-bin/trf-bin-4.09.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-biology/trf-bin/trf-bin-4.09.ebuild b/sci-biology/trf-bin/trf-bin-4.09.ebuild
index facc411..a560b89 100644
--- a/sci-biology/trf-bin/trf-bin-4.09.ebuild
+++ b/sci-biology/trf-bin/trf-bin-4.09.ebuild
@@ -14,6 +14,7 @@ DESCRIPTION="Tandem Repeats Finder"
 HOMEPAGE="http://tandem.bu.edu/trf/trf.html"
 SRC_URI="x86? ( http://tandem.bu.edu/trf/downloads/${MY_P}.linux32 )
 	amd64? ( http://tandem.bu.edu/trf/downloads/${MY_P}.linux64 )"
+# trf: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by trf)
 
 LICENSE="trf"	# http://tandem.bu.edu/trf/trf.license.html
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: sci-biology/trf-bin/

[Justin Lecher]

commit:     d604b93879888ad4576663c82a3361d0c6c50cb2
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Nov 18 19:47:33 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Nov 18 19:49:23 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d604b938

sci-biology/trf-bin: Fix repoman warnings

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/trf-bin/trf-bin-4.09.ebuild | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/sci-biology/trf-bin/trf-bin-4.09.ebuild b/sci-biology/trf-bin/trf-bin-4.09.ebuild
index d73daa4f5..896f7fb7c 100644
--- a/sci-biology/trf-bin/trf-bin-4.09.ebuild
+++ b/sci-biology/trf-bin/trf-bin-4.09.ebuild
@@ -11,8 +11,9 @@ MY_P="trf${MY_PV}"
 
 DESCRIPTION="Tandem Repeats Finder"
 HOMEPAGE="http://tandem.bu.edu/trf/trf.html"
-SRC_URI="x86? ( http://tandem.bu.edu/trf/downloads/${MY_P}.linux32 )
-	amd64? ( http://tandem.bu.edu/trf/downloads/${MY_P}.linux64 )"
+SRC_URI="
+	amd64? ( http://tandem.bu.edu/trf/downloads/${MY_P}.linux64 )
+	x86? ( http://tandem.bu.edu/trf/downloads/${MY_P}.linux32 )"
 # trf: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by trf)
 
 LICENSE="trf"	# http://tandem.bu.edu/trf/trf.license.html
@@ -38,7 +39,7 @@ src_unpack() {
 src_install() {
 	exeinto /opt/"${MY_PN}"/bin
 	doexe "${MY_PN}"
-	dosym /opt/"${MY_PN}"/bin/"${MY_PN}" /opt/bin/"${MY_PN}"
+	dosym ../"${MY_PN}"/bin/"${MY_PN}" /opt/bin/"${MY_PN}"
 	# GTK version (http://tandem.bu.edu/trf/downloads/trf400.linuxgtk.exe) has broken linking
 	#if use gtk; then
 	#	doexe trf400.linuxgtk.exe

[gentoo-commits] proj/sci:master commit in: sci-biology/trf-bin/

[Andrew Ammerlaan]

commit:     ade93a2aa193b9f8385138c6986f4fa581dd84ff
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 15:39:56 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 15:39:56 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ade93a2a

sci-biology/trf-bin: EAPi bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/trf-bin/trf-bin-4.09.ebuild | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/sci-biology/trf-bin/trf-bin-4.09.ebuild b/sci-biology/trf-bin/trf-bin-4.09.ebuild
index 896f7fb7c..7d3a9a8b5 100644
--- a/sci-biology/trf-bin/trf-bin-4.09.ebuild
+++ b/sci-biology/trf-bin/trf-bin-4.09.ebuild
@@ -1,9 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
-
-inherit eutils
+EAPI=7
 
 MY_PV="${PV/.}" # drop the dot
 MY_PN="trf"