* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2015-12-31 21:18 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2015-12-31 21:18 UTC (permalink / raw
To: gentoo-commits
commit: 3b9147f553cfb4269f170b001477870d458af241
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 31 21:16:52 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 31 21:16:52 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b9147f5
sci-biology/GAL: new package, needed by trinityrnaseq and maker
Package-Manager: portage-2.2.26
sci-biology/GAL/ChangeLog | 10 ++++++++++
sci-biology/GAL/GAL-0.2.1.ebuild | 21 +++++++++++++++++++++
sci-biology/GAL/GAL-0.2.2.ebuild | 21 +++++++++++++++++++++
sci-biology/GAL/metadata.xml | 9 +++++++++
4 files changed, 61 insertions(+)
diff --git a/sci-biology/GAL/ChangeLog b/sci-biology/GAL/ChangeLog
new file mode 100644
index 0000000..838a7b5
--- /dev/null
+++ b/sci-biology/GAL/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/GAL
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+*GAL-0.2.1 (31 Dec 2015)
+*GAL-0.2.2 (31 Dec 2015)
+
+ 31 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +GAL-0.2.1.ebuild,
+ +GAL-0.2.2.ebuild, +metadata.xml:
+ sci-biology/GAL: new package, needed by trinityrnaseq and maker
diff --git a/sci-biology/GAL/GAL-0.2.1.ebuild b/sci-biology/GAL/GAL-0.2.1.ebuild
new file mode 100644
index 0000000..6cfadb1
--- /dev/null
+++ b/sci-biology/GAL/GAL-0.2.1.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils perl-module
+
+DESCRIPTION="Genome Annotation Library (incl. fasta_tool)"
+HOMEPAGE="http://www.sequenceontology.org/software/GAL.html"
+SRC_URI="http://www.sequenceontology.org/software/GAL_Code/${PN}_${PV}.tar.gz"
+
+LICENSE="( GPL-1+ Artistic )"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+ dev-perl/TAP-Harness
+ dev-perl/Module-Build"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
new file mode 100644
index 0000000..6cfadb1
--- /dev/null
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils perl-module
+
+DESCRIPTION="Genome Annotation Library (incl. fasta_tool)"
+HOMEPAGE="http://www.sequenceontology.org/software/GAL.html"
+SRC_URI="http://www.sequenceontology.org/software/GAL_Code/${PN}_${PV}.tar.gz"
+
+LICENSE="( GPL-1+ Artistic )"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+ dev-perl/TAP-Harness
+ dev-perl/Module-Build"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/GAL/metadata.xml b/sci-biology/GAL/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/GAL/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2015-12-31 22:24 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2015-12-31 22:24 UTC (permalink / raw
To: gentoo-commits
commit: 142e470312ba201d86f14394277f778df3d7afef
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 31 22:23:14 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 31 22:23:14 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=142e4703
sci-biology/GAL: TAP::Harness is provided by dev-lang/perl itself, drop the extra DEPENDency
Package-Manager: portage-2.2.26
sci-biology/GAL/GAL-0.2.1.ebuild | 4 +---
sci-biology/GAL/GAL-0.2.2.ebuild | 4 +---
2 files changed, 2 insertions(+), 6 deletions(-)
diff --git a/sci-biology/GAL/GAL-0.2.1.ebuild b/sci-biology/GAL/GAL-0.2.1.ebuild
index 6cfadb1..e8f302c 100644
--- a/sci-biology/GAL/GAL-0.2.1.ebuild
+++ b/sci-biology/GAL/GAL-0.2.1.ebuild
@@ -15,7 +15,5 @@ SLOT="0"
KEYWORDS=""
IUSE=""
-DEPEND="
- dev-perl/TAP-Harness
- dev-perl/Module-Build"
+DEPEND="dev-perl/Module-Build"
RDEPEND="${DEPEND}"
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index 6cfadb1..e8f302c 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -15,7 +15,5 @@ SLOT="0"
KEYWORDS=""
IUSE=""
-DEPEND="
- dev-perl/TAP-Harness
- dev-perl/Module-Build"
+DEPEND="dev-perl/Module-Build"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2015-12-31 23:28 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2015-12-31 23:28 UTC (permalink / raw
To: gentoo-commits
commit: 4d570aec3942c847d10ffc940b43ce55e92ac28e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 31 23:27:19 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 31 23:27:19 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4d570aec
sci-biology/GAL: fix S variable; beware the package is a bundle of many 3rd-party perl modules and apps, it runs wget to fetch additional ones, can't go into the tree as it is now (resolving it now with upstream)
Package-Manager: portage-2.2.26
sci-biology/GAL/ChangeLog | 6 ++++++
sci-biology/GAL/GAL-0.2.1.ebuild | 2 ++
sci-biology/GAL/GAL-0.2.2.ebuild | 2 ++
3 files changed, 10 insertions(+)
diff --git a/sci-biology/GAL/ChangeLog b/sci-biology/GAL/ChangeLog
index 838a7b5..8f82b90 100644
--- a/sci-biology/GAL/ChangeLog
+++ b/sci-biology/GAL/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 31 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> GAL-0.2.1.ebuild,
+ GAL-0.2.2.ebuild:
+ sci-biology/GAL: fix S variable; beware the package is a bundle of many 3rd-
+ party perl modules and apps, it runs wget to fetch additional ones, can't go
+ into the tree as it is now (resolving it now with upstream)
+
*GAL-0.2.1 (31 Dec 2015)
*GAL-0.2.2 (31 Dec 2015)
diff --git a/sci-biology/GAL/GAL-0.2.1.ebuild b/sci-biology/GAL/GAL-0.2.1.ebuild
index e8f302c..3bfb6bc 100644
--- a/sci-biology/GAL/GAL-0.2.1.ebuild
+++ b/sci-biology/GAL/GAL-0.2.1.ebuild
@@ -17,3 +17,5 @@ IUSE=""
DEPEND="dev-perl/Module-Build"
RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}_${PV}"
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index e8f302c..3bfb6bc 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -17,3 +17,5 @@ IUSE=""
DEPEND="dev-perl/Module-Build"
RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}_${PV}"
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2016-01-01 21:04 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2016-01-01 21:04 UTC (permalink / raw
To: gentoo-commits
commit: 7bb2e600a2e941545429f393b1ef59ff07260f55
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan 1 21:03:34 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan 1 21:03:34 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7bb2e600
sci-biology/GAL: add more perl dependencies; drop old
Package-Manager: portage-2.2.26
sci-biology/GAL/GAL-0.2.1.ebuild | 25 -------------------------
sci-biology/GAL/GAL-0.2.2.ebuild | 16 +++++++++++++++-
2 files changed, 15 insertions(+), 26 deletions(-)
diff --git a/sci-biology/GAL/GAL-0.2.1.ebuild b/sci-biology/GAL/GAL-0.2.1.ebuild
deleted file mode 100644
index e84b595..0000000
--- a/sci-biology/GAL/GAL-0.2.1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-inherit eutils perl-module
-
-DESCRIPTION="Genome Annotation Library (incl. fasta_tool)"
-HOMEPAGE="http://www.sequenceontology.org/software/GAL.html"
-SRC_URI="http://www.sequenceontology.org/software/GAL_Code/${PN}_${PV}.tar.gz"
-
-LICENSE="( GPL-1+ Artistic )"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-perl/Module-Build"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}_${PV}"
-
-src_prepare(){
- epatch "${FILESDIR}"/Build.PL.patch
-}
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index e84b595..3b70e1c 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -15,7 +15,21 @@ SLOT="0"
KEYWORDS=""
IUSE=""
-DEPEND="dev-perl/Module-Build"
+DEPEND="
+ >=dev-lang/perl-5.6.1
+ dev-perl/Module-Build
+ dev-perl/DBIx-Class
+ dev-perl/IO-All
+ dev-perl/Number-Format
+ dev-perl/Set-IntSpan
+ dev-perl/Statistics-Descriptive-Discrete
+ dev-perl/Template
+ dev-perl/Text-Graph
+ dev-perl/Text-RecordParser
+ dev-perl/Text-Table
+ dev-perl/Exception-Class
+ dev-perl/Test-Warn
+ dev-perl/DBIx-Class-ResultClass-HashRefInflator"
RDEPEND="${DEPEND}"
S="${WORKDIR}/${PN}_${PV}"
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2016-01-02 10:07 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2016-01-02 10:07 UTC (permalink / raw
To: gentoo-commits
commit: 0c571eaf1b1b778709d9aacbfb7c81bc4fd0f4a8
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jan 2 10:06:23 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jan 2 10:06:23 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0c571eaf
sci-biology/GAL: add another perl DEPENDency
Package-Manager: portage-2.2.26
sci-biology/GAL/ChangeLog | 5 ++++-
sci-biology/GAL/GAL-0.2.2.ebuild | 5 +++--
2 files changed, 7 insertions(+), 3 deletions(-)
diff --git a/sci-biology/GAL/ChangeLog b/sci-biology/GAL/ChangeLog
index 838a7b5..d65ee90 100644
--- a/sci-biology/GAL/ChangeLog
+++ b/sci-biology/GAL/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-biology/GAL
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 02 Jan 2016; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> GAL-0.2.2.ebuild:
+ sci-biology/GAL: add another perl DEPENDency
+
*GAL-0.2.1 (31 Dec 2015)
*GAL-0.2.2 (31 Dec 2015)
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index 3b70e1c..8275477 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -29,7 +29,8 @@ DEPEND="
dev-perl/Text-Table
dev-perl/Exception-Class
dev-perl/Test-Warn
- dev-perl/DBIx-Class-ResultClass-HashRefInflator"
+ dev-perl/DBIx-Class-ResultClass-HashRefInflator
+ dev-perl/URI"
RDEPEND="${DEPEND}"
S="${WORKDIR}/${PN}_${PV}"
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2016-01-04 14:54 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2016-01-04 14:54 UTC (permalink / raw
To: gentoo-commits
commit: 9d11e87f14c8d9aefad761fe871794538d41d3e2
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jan 4 14:53:17 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jan 4 14:53:17 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9d11e87f
sci-biology/GAL: fix some package names in DEPEND to match actual CPAN packages
Package-Manager: portage-2.2.26
sci-biology/GAL/ChangeLog | 4 ++++
sci-biology/GAL/GAL-0.2.2.ebuild | 4 ++--
2 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/sci-biology/GAL/ChangeLog b/sci-biology/GAL/ChangeLog
index 7ad355f..3cfe9d4 100644
--- a/sci-biology/GAL/ChangeLog
+++ b/sci-biology/GAL/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 04 Jan 2016; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> GAL-0.2.2.ebuild:
+ sci-biology/GAL: fix some package names in DEPEND to match actual CPAN
+ packages
+
02 Jan 2016; Andreas K. Huettel <dilfridge@gentoo.org> files/Build.PL.patch:
Force systemwide installation by removing all the manual build fiddling
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index 8275477..c81f6df 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -23,13 +23,13 @@ DEPEND="
dev-perl/Number-Format
dev-perl/Set-IntSpan
dev-perl/Statistics-Descriptive-Discrete
- dev-perl/Template
+ dev-perl/Template-Toolkit
dev-perl/Text-Graph
dev-perl/Text-RecordParser
dev-perl/Text-Table
dev-perl/Exception-Class
dev-perl/Test-Warn
- dev-perl/DBIx-Class-ResultClass-HashRefInflator
+ dev-perl/DBIx-Class
dev-perl/URI"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2017-01-31 10:58 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2017-01-31 10:58 UTC (permalink / raw
To: gentoo-commits
commit: d82b7f0131d896a1d27ec77f97167b292015c5ce
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 31 10:58:06 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 31 10:58:06 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d82b7f01
sci-biology/GAL: add more dependencies
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/GAL/GAL-0.2.2.ebuild | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index 7117253..86a3eeb 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -18,9 +18,12 @@ IUSE=""
DEPEND="
>=dev-lang/perl-5.6.1
dev-perl/Module-Build
+ perl-core/Data-Dumper
+ dev-perl/DBD-SQLite
dev-perl/DBIx-Class
dev-perl/IO-All
dev-perl/Number-Format
+ perl-core/Scalar-List-Utils
dev-perl/Set-IntSpan
dev-perl/Statistics-Descriptive-Discrete
dev-perl/Template-Toolkit
@@ -29,7 +32,6 @@ DEPEND="
dev-perl/Text-Table
dev-perl/Exception-Class
dev-perl/Test-Warn
- dev-perl/DBIx-Class
dev-perl/URI"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2017-01-31 10:59 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2017-01-31 10:59 UTC (permalink / raw
To: gentoo-commits
commit: 98edbec85e3f24bacaf5a56688a85f391e05a8aa
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 31 10:59:35 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 31 10:59:35 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=98edbec8
sci-biology/GAL: depend on virtuals
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/GAL/GAL-0.2.2.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index 86a3eeb..6a01474 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -18,12 +18,12 @@ IUSE=""
DEPEND="
>=dev-lang/perl-5.6.1
dev-perl/Module-Build
- perl-core/Data-Dumper
+ virtual/perl-Data-Dumper
dev-perl/DBD-SQLite
dev-perl/DBIx-Class
dev-perl/IO-All
dev-perl/Number-Format
- perl-core/Scalar-List-Utils
+ virtual/perl-Scalar-List-Utils
dev-perl/Set-IntSpan
dev-perl/Statistics-Descriptive-Discrete
dev-perl/Template-Toolkit
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2017-01-31 12:44 Martin Mokrejs
0 siblings, 0 replies; 10+ messages in thread
From: Martin Mokrejs @ 2017-01-31 12:44 UTC (permalink / raw
To: gentoo-commits
commit: 1b87ed6e019e93e97d474b1bab5bfdb08c25937b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 31 12:44:42 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 31 12:44:42 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1b87ed6e
sci-biology/GAL: added additional deps
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/GAL/GAL-0.2.2.ebuild | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2.ebuild
index 6a01474..ace781f 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2.ebuild
@@ -18,13 +18,15 @@ IUSE=""
DEPEND="
>=dev-lang/perl-5.6.1
dev-perl/Module-Build
+ dev-perl/Config-Std
virtual/perl-Data-Dumper
+ dev-perl/Data-Types
dev-perl/DBD-SQLite
dev-perl/DBIx-Class
dev-perl/IO-All
dev-perl/Number-Format
virtual/perl-Scalar-List-Utils
- dev-perl/Set-IntSpan
+ dev-perl/Set-IntSpan-Fast
dev-perl/Statistics-Descriptive-Discrete
dev-perl/Template-Toolkit
dev-perl/Text-Graph
^ permalink raw reply related [flat|nested] 10+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/GAL/
@ 2021-01-19 13:54 Andrew Ammerlaan
0 siblings, 0 replies; 10+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 13:54 UTC (permalink / raw
To: gentoo-commits
commit: 421630ddde61a0a4c49e4a3f53830022d1494e2a
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 13:54:41 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 13:54:41 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=421630dd
sci-biology/GAL: EAPI bump, fix fetching
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/GAL/GAL-0.2.2_p20200508.ebuild | 13 +++++--------
1 file changed, 5 insertions(+), 8 deletions(-)
diff --git a/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild b/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild
index 445b9eaa3..1aa7e99be 100644
--- a/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -13,7 +13,9 @@ SRC_URI="https://github.com/The-Sequence-Ontology/GAL/archive/${COMMIT}.tar.gz -
LICENSE="( GPL-1+ Artistic )"
SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS=""
+
+RESTRICT="test"
DEPEND="
>=dev-lang/perl-5.6.1
@@ -37,9 +39,4 @@ DEPEND="
dev-perl/URI"
RDEPEND="${DEPEND}"
-S="${WORKDIR}/${PN}_${PV}"
-
-src_prepare(){
- default
- epatch "${FILESDIR}"/Build.PL.patch
-}
+S="${WORKDIR}/${PN}-${COMMIT}"
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