* [gentoo-commits] proj/sci:master commit in: sci-biology/apollo/
@ 2012-02-07 23:41 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2012-02-07 23:41 UTC (permalink / raw
To: gentoo-commits
commit: db818e2cc3aa020ab6aaedfc5c2e8880faadf572
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 7 23:41:07 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 7 23:41:07 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=db818e2c
sci-biology/apollo: new package
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
sci-biology/apollo/ChangeLog | 7 +++++++
sci-biology/apollo/apollo-9999.ebuild | 5 ++++-
2 files changed, 11 insertions(+), 1 deletions(-)
diff --git a/sci-biology/apollo/ChangeLog b/sci-biology/apollo/ChangeLog
new file mode 100644
index 0000000..6e694c0
--- /dev/null
+++ b/sci-biology/apollo/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/apollo
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> apollo-9999.ebuild:
+ initial ebuild
+
diff --git a/sci-biology/apollo/apollo-9999.ebuild b/sci-biology/apollo/apollo-9999.ebuild
index 49b452e..a1aec21 100644
--- a/sci-biology/apollo/apollo-9999.ebuild
+++ b/sci-biology/apollo/apollo-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -43,4 +43,7 @@ src_compile() {
src_install() {
java-pkg_dojar jars/apollo.jar || die
+
+ echo "PATH=/opt/Apollo" > 99Apollo
+ doenvd 99Apollo || die
}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/apollo/
@ 2014-03-23 16:22 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2014-03-23 16:22 UTC (permalink / raw
To: gentoo-commits
commit: ec14861a0e6d8877938da4247b5a2045a205d032
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 16:20:58 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 16:20:58 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ec14861a
sci-biology/apollo: a skeleton for a new package, needs help
Package-Manager: portage-2.2.7
---
sci-biology/apollo/ChangeLog | 6 ++++--
sci-biology/apollo/apollo-9999.ebuild | 12 +++++-------
2 files changed, 9 insertions(+), 9 deletions(-)
diff --git a/sci-biology/apollo/ChangeLog b/sci-biology/apollo/ChangeLog
index 6e694c0..f3eab97 100644
--- a/sci-biology/apollo/ChangeLog
+++ b/sci-biology/apollo/ChangeLog
@@ -1,7 +1,9 @@
# ChangeLog for sci-biology/apollo
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> apollo-9999.ebuild:
+ sci-biology/apollo: a skeleton for a new package, needs help
+
07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> apollo-9999.ebuild:
initial ebuild
-
diff --git a/sci-biology/apollo/apollo-9999.ebuild b/sci-biology/apollo/apollo-9999.ebuild
index c0dd152..a0b8624 100644
--- a/sci-biology/apollo/apollo-9999.ebuild
+++ b/sci-biology/apollo/apollo-9999.ebuild
@@ -2,13 +2,13 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
inherit java-pkg-2 java-ant-2
[ "$PV" == "9999" ] && inherit subversion
-DESCRIPTION="The Apollo genome editor is a Java-based application for browsing and annotating genomic sequences."
+DESCRIPTION="Apollo genome editor is Java-based application for browsing and annotation of genomic sequences."
HOMEPAGE="http://gmod.org/wiki/Apollo"
if [ "$PV" == "9999" ]; then
#SRC_URI="http://gmod.svn.sourceforge.net/viewvc/gmod/apollo/?view=tar" # Apollo_unix.sh
@@ -24,13 +24,11 @@ SLOT="0"
IUSE=""
KEYWORDS=""
-DEPEND="dev-vcs/subversion
- >=virtual/jdk-1.5
- >=dev-java/sun-jdk-1.5
+DEPEND=">=virtual/jre-1.5
+ dev-vcs/subversion
dev-java/ant-core
dev-lang/perl"
-RDEPEND=">=virtual/jre-1.5
- ${DEPEND}"
+RDEPEND="${DEPEND}"
src_unpack() {
subversion_src_unpack || die
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/apollo/
@ 2016-02-17 22:51 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2016-02-17 22:51 UTC (permalink / raw
To: gentoo-commits
commit: b552a3fd07b62be17dbb99ad87b4ecbbfa20b3e1
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Feb 17 22:48:26 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Feb 17 22:48:26 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b552a3fd
fix indent
Package-Manager: portage-2.2.26
sci-biology/apollo/metadata.xml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/apollo/metadata.xml b/sci-biology/apollo/metadata.xml
index 1699e58..f68a1b6 100644
--- a/sci-biology/apollo/metadata.xml
+++ b/sci-biology/apollo/metadata.xml
@@ -5,7 +5,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
-<maintainer type="project">
+ <maintainer type="project">
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
</maintainer>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/apollo/
@ 2017-01-29 20:25 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2017-01-29 20:25 UTC (permalink / raw
To: gentoo-commits
commit: c714b20bbe1ab888cd55ca61643e28aa707c545e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 20:25:01 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 20:25:17 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c714b20b
sci-biology/apollo: QA fixes
Bump to EAPI 6
shorten DESCRIPTION
drop dead code
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/apollo/apollo-9999.ebuild | 19 +++++--------------
1 file changed, 5 insertions(+), 14 deletions(-)
diff --git a/sci-biology/apollo/apollo-9999.ebuild b/sci-biology/apollo/apollo-9999.ebuild
index b92396a..d3b7e49 100644
--- a/sci-biology/apollo/apollo-9999.ebuild
+++ b/sci-biology/apollo/apollo-9999.ebuild
@@ -1,23 +1,14 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
-inherit java-pkg-2 java-ant-2
+inherit java-pkg-2 java-ant-2 subversion
-[ "$PV" == "9999" ] && inherit subversion
-
-DESCRIPTION="Apollo genome editor is Java-based application for browsing and annotation of genomic sequences"
+DESCRIPTION="Apollo genome editor"
HOMEPAGE="http://gmod.org/wiki/Apollo"
-if [ "$PV" == "9999" ]; then
- #SRC_URI="http://gmod.svn.sourceforge.net/viewvc/gmod/apollo/?view=tar" # Apollo_unix.sh
- ESVN_REPO_URI="https://gmod.svn.sourceforge.net/svnroot/gmod/apollo/trunk"
- #KEYWORDS="~amd64 ~x86"
-else
- SRC_URI="http://apollo.berkeleybop.org/current/installers/Apollo_unix.sh"
- #KEYWORDS="~amd64 ~x86"
-fi
+ESVN_REPO_URI="https://gmod.svn.sourceforge.net/svnroot/gmod/apollo/trunk"
LICENSE="Artistic"
SLOT="0"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/apollo/
@ 2021-03-05 21:44 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 21:44 UTC (permalink / raw
To: gentoo-commits
commit: 3a526ca504ca9d442723272a576febe6c5ecc5f0
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 21:43:24 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 21:43:24 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3a526ca5
sci-biology/appolo: remove pack, unfetachbale
new repo on github but it uses gradle which is not
supported by portage, does not compile
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/apollo/apollo-9999.ebuild | 40 -----------------------------------
sci-biology/apollo/metadata.xml | 12 -----------
2 files changed, 52 deletions(-)
diff --git a/sci-biology/apollo/apollo-9999.ebuild b/sci-biology/apollo/apollo-9999.ebuild
deleted file mode 100644
index 84f6eb69d..000000000
--- a/sci-biology/apollo/apollo-9999.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit java-pkg-2 java-ant-2 subversion
-
-DESCRIPTION="Apollo genome editor"
-HOMEPAGE="http://gmod.org/wiki/Apollo"
-ESVN_REPO_URI="https://gmod.svn.sourceforge.net/svnroot/gmod/apollo/trunk"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS=""
-
-RDEPEND="
- >=virtual/jre-1.5:*
- dev-lang/perl
- "
-DEPEND="${RDEPEND}
- >=virtual/jdk-1.5:*
- dev-java/ant-core
- "
-
-src_unpack() {
- subversion_src_unpack
-}
-
-src_compile() {
- cd src/java || die
- ant compile || die
-}
-
-src_install() {
- java-pkg_dojar jars/apollo.jar
-
- echo "PATH=/opt/Apollo" > 99Apollo
- doenvd 99Apollo
-}
diff --git a/sci-biology/apollo/metadata.xml b/sci-biology/apollo/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/apollo/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
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