[gentoo-commits] proj/sci:master commit in: sci-biology/Ray/

[gentoo-commits] proj/sci:master commit in: sci-biology/Ray/

[Justin Lecher]

commit:     1f3ac11ff790375b78743bb4e987ca433ec40881
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 20:22:28 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 20:25:16 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1f3ac11f

sci-biology/Ray: QA fixes

Bump to EAPI 6
shorten DESCRIPTION
add static libs support

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/Ray/Ray-2.3.0.ebuild | 17 ++++++-----------
 1 file changed, 6 insertions(+), 11 deletions(-)

diff --git a/sci-biology/Ray/Ray-2.3.0.ebuild b/sci-biology/Ray/Ray-2.3.0.ebuild
index 02789a1..352a5dd 100644
--- a/sci-biology/Ray/Ray-2.3.0.ebuild
+++ b/sci-biology/Ray/Ray-2.3.0.ebuild
@@ -1,28 +1,23 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
-DESCRIPTION="Assembler for metagenomes, genomes and transcriptomes (untested) using parallel MPI"
+DESCRIPTION="Assembler for metagenomes, genomes and transcriptomes using MPI"
 HOMEPAGE="http://denovoassembler.sourceforge.net/"
 SRC_URI="http://sourceforge.net/projects/denovoassembler/files/Ray-"${PV}".tar.bz2"
 
-LICENSE="LGPL-3 GPL-3" # both must be agreed
+LICENSE="LGPL-3 GPL-3"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE=""
+IUSE="static-libs"
 
 DEPEND="virtual/mpi"
 RDEPEND="${DEPEND}
 	sys-cluster/osc-mpiexec"
 
-src_prepare(){
-	cp -p README.md README
-	cp -p README.md RayPlatform/README
-}
-
 src_install(){
 	dobin Ray
-	dolib libRayPlatform.a libRay.a
+	use statics-libs && dolib.a libRayPlatform.a libRay.a
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/Ray/

[Horea Christian]

commit:     46cc4b6980b7bbfb5cf6718811fb8009ec99ecb8
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 09:39:30 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 09:39:30 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=46cc4b69

sci-biology/Ray: removed package with missing dep

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/Ray/Ray-2.3.0.ebuild | 22 ----------------------
 sci-biology/Ray/metadata.xml     | 15 ---------------
 2 files changed, 37 deletions(-)

diff --git a/sci-biology/Ray/Ray-2.3.0.ebuild b/sci-biology/Ray/Ray-2.3.0.ebuild
deleted file mode 100644
index aa21e2a25..000000000
--- a/sci-biology/Ray/Ray-2.3.0.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Assembler for metagenomes, genomes and transcriptomes using MPI"
-HOMEPAGE="http://denovoassembler.sourceforge.net/"
-SRC_URI="http://sourceforge.net/projects/denovoassembler/files/Ray-"${PV}".tar.bz2"
-
-LICENSE="LGPL-3 GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="static-libs"
-
-DEPEND="virtual/mpi"
-RDEPEND="${DEPEND}
-	sys-cluster/osc-mpiexec"
-
-src_install(){
-	dobin Ray
-	use static-libs && dolib.a libRayPlatform.a libRay.a
-}

diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
deleted file mode 100644
index 982286fb0..000000000
--- a/sci-biology/Ray/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">denovoassembler</remote-id>
-	</upstream>
-</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/Ray/

[Martin Mokrejs]

commit:     646d44d6cf8a23ba2f91aac33599906d5f2f8181
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Feb 24 11:02:34 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Feb 24 11:02:34 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=646d44d6

sci-biology/Ray: fix typo in USE variable

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/Ray/Ray-2.3.0.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/Ray/Ray-2.3.0.ebuild b/sci-biology/Ray/Ray-2.3.0.ebuild
index 352a5dd01..a74548fe5 100644
--- a/sci-biology/Ray/Ray-2.3.0.ebuild
+++ b/sci-biology/Ray/Ray-2.3.0.ebuild
@@ -19,5 +19,5 @@ RDEPEND="${DEPEND}
 
 src_install(){
 	dobin Ray
-	use statics-libs && dolib.a libRayPlatform.a libRay.a
+	use static-libs && dolib.a libRayPlatform.a libRay.a
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/Ray/

[Martin Mokrejs]

commit:     8fdfde872ca6dc317739c26a7a195b11a86283af
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 17:57:26 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 17:57:26 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8fdfde87

sci-biology/Ray: a new package, maybe needs decent inspection from cluster herd and also java

Package-Manager: portage-2.2.7

---
 sci-biology/Ray/ChangeLog        | 10 ++++++++++
 sci-biology/Ray/Ray-2.3.0.ebuild | 28 ++++++++++++++++++++++++++++
 sci-biology/Ray/metadata.xml     |  9 +++++++++
 3 files changed, 47 insertions(+)

diff --git a/sci-biology/Ray/ChangeLog b/sci-biology/Ray/ChangeLog
new file mode 100644
index 0000000..5341c31
--- /dev/null
+++ b/sci-biology/Ray/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/Ray
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*Ray-2.3.0 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +Ray-2.3.0.ebuild,
+  +metadata.xml:
+  sci-biology/Ray: a new package, maybe needs decent inspection from cluster
+  herd and also java

diff --git a/sci-biology/Ray/Ray-2.3.0.ebuild b/sci-biology/Ray/Ray-2.3.0.ebuild
new file mode 100644
index 0000000..2a904be
--- /dev/null
+++ b/sci-biology/Ray/Ray-2.3.0.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Assembler for metagenomes, genomes and transcriptomes (untested) using parallel MPI"
+HOMEPAGE="http://denovoassembler.sourceforge.net/"
+SRC_URI="http://sourceforge.net/projects/denovoassembler/files/Ray-"${PV}".tar.bz2"
+
+LICENSE="LGPL-3 GPL-3" # both must be agreed
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="virtual/mpi"
+RDEPEND="${DEPEND}
+	sys-cluster/osc-mpiexec"
+
+src_prepare(){
+	cp -p README.md README
+	cp -p README.md RayPlatform/README
+}
+
+src_install(){
+	dobin Ray
+	dolib libRayPlatform.a libRay.a
+}

diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/Ray/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>