[gentoo-commits] proj/sci:master commit in: sci-biology/SEECER/

["Justin Lecher" <jlec@gentoo.org>]

commit:     c38274779a20385ad70d5c2aa2dac34d8525868d
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 13:44:25 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 13:44:25 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3827477

sci-biology/SEECER: QA fixes

Bump to6 EAPI
drop non active code
add missing slot operator

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/SEECER/SEECER-0.1.3-r2.ebuild | 23 +++++++++++------------
 sci-biology/SEECER/metadata.xml           |  2 +-
 2 files changed, 12 insertions(+), 13 deletions(-)

diff --git a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild
index 8d8e919..f2b5a67 100644
--- a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild
+++ b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild
@@ -1,41 +1,40 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
 inherit eutils
 
 DESCRIPTION="SEquencing Error Corrector for RNA-Seq reads"
 HOMEPAGE="http://sb.cs.cmu.edu/seecer/"
-if [ "$PV" == "9999" ]; then
-	EGIT_REPO_URI="https://github.com/haisonle/SEECER.git"
-	KEYWORDS=""
-else
-	SRC_URI="
+SRC_URI="
 	http://sb.cs.cmu.edu/seecer/downloads/"${P}".tar.gz
 	http://sb.cs.cmu.edu/seecer/downloads/manual.pdf -> "${PN}"-manual.pdf"
-	KEYWORDS="~amd64"
-fi
 
 LICENSE="GPL-3"
 SLOT="0"
 IUSE=""
+KEYWORDS="~amd64"
 
 # although has bundled jellyfish-1.1.11 copy it just calls the executable during runtime
 # seems jellyfish-2 does not accept same commandline arguments
 DEPEND="
-	sci-libs/gsl
-	sci-biology/seqan"
+	sci-libs/gsl:0=
+	sci-biology/seqan:0="
 RDEPEND="${DEPEND}
 	=sci-biology/jellyfish-1.1.11"
 
 S="${S}"/SEECER
 
+PATCHES=(
+	"${FILESDIR}"/remove-hardcoded-paths.patch
+)
+
 src_prepare(){
 	# http://seecer-rna-read-error-correction-mailing-list.21961.x6.nabble.com/Segmentation-fault-in-step-4-td41.html
 	cp -p "${FILESDIR}"/replace_ids.cc "${S}"/src/ || die
-	epatch "${FILESDIR}"/remove-hardcoded-paths.patch
+	default
 }
 
 src_install(){

diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml
index 1699e58..f68a1b6 100644
--- a/sci-biology/SEECER/metadata.xml
+++ b/sci-biology/SEECER/metadata.xml
@@ -5,7 +5,7 @@
     <email>mmokrejs@fold.natur.cuni.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
-<maintainer type="project">
+  <maintainer type="project">
     <email>sci-biology@gentoo.org</email>
     <name>Gentoo Biology Project</name>
   </maintainer>