* [gentoo-commits] repo/gentoo:master commit in: sci-visualization/circos/
@ 2016-08-02 11:54 Kent Fredric
0 siblings, 0 replies; 6+ messages in thread
From: Kent Fredric @ 2016-08-02 11:54 UTC (permalink / raw
To: gentoo-commits
commit: f7da457d7ff8f59b6d713b21fcc0763b23a33b72
Author: Kent Fredric <kentnl <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 2 11:26:24 2016 +0000
Commit: Kent Fredric <kentnl <AT> gentoo <DOT> org>
CommitDate: Tue Aug 2 11:30:26 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f7da457d
sci-visualization/circos: Fix dependency on dev-perl/Regexp-Common
Part of Capitalization Migration
Package-Manager: portage-2.3.0
RepoMan-Options: --include-arches="alpha amd64 amd64-fbsd arm arm64 hppa ia64 m68k mips nios2 ppc ppc64 riscv s390 sh sparc sparc-fbsd x86 x86-fbsd"
sci-visualization/circos/circos-0.55.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-visualization/circos/circos-0.55.ebuild b/sci-visualization/circos/circos-0.55.ebuild
index 8d443f8..01f7faa 100644
--- a/sci-visualization/circos/circos-0.55.ebuild
+++ b/sci-visualization/circos/circos-0.55.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -20,7 +20,7 @@ DEPEND="dev-perl/Config-General
dev-perl/Math-VecStat
dev-perl/Params-Validate
dev-perl/Readonly
- dev-perl/regexp-common
+ dev-perl/Regexp-Common
>=dev-perl/Set-IntSpan-1.11
dev-perl/Graphics-ColorObject
dev-perl/List-MoreUtils"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-visualization/circos/
@ 2017-01-15 10:13 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2017-01-15 10:13 UTC (permalink / raw
To: gentoo-commits
commit: 4c4d4873c10d6142aec0ca391ae9b8611d0c85ea
Author: Gerhard Bräunlich <wippbox <AT> gmx <DOT> net>
AuthorDate: Sat Jan 14 14:11:10 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jan 15 10:12:28 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4c4d4873
sci-visualization/circos: EAPI bump 4 -> 6
Package-Manager: portage-2.3.0
Closes: https://github.com/gentoo/gentoo/pull/3470
sci-visualization/circos/circos-0.55-r1.ebuild | 43 ++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/sci-visualization/circos/circos-0.55-r1.ebuild b/sci-visualization/circos/circos-0.55-r1.ebuild
new file mode 100644
index 00000000..8212f34
--- /dev/null
+++ b/sci-visualization/circos/circos-0.55-r1.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="Circular layout visualization of genomic and other data"
+HOMEPAGE="http://mkweb.bcgsc.ca/circos/"
+SRC_URI="http://mkweb.bcgsc.ca/circos/distribution/${P}.tgz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="dev-perl/Config-General
+ dev-perl/GD
+ dev-perl/Math-Bezier
+ dev-perl/Math-Round
+ dev-perl/Math-VecStat
+ dev-perl/Params-Validate
+ dev-perl/Readonly
+ dev-perl/Regexp-Common
+ >=dev-perl/Set-IntSpan-1.11
+ dev-perl/Graphics-ColorObject
+ dev-perl/List-MoreUtils"
+RDEPEND="${DEPEND}"
+
+src_install() {
+ insinto /opt/${PN}
+ doins -r */
+
+ exeinto /opt/${PN}/bin
+ doexe bin/circos bin/gddiag
+
+ dosym /opt/${PN}/bin/circos /usr/bin/circos
+
+ einstalldocs
+ local d
+ while IFS="" read -d $'\0' -r d; do
+ dodoc "${d}"
+ done < <(find * -maxdepth 0 -type f -print0)
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-visualization/circos/
@ 2017-01-15 10:13 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2017-01-15 10:13 UTC (permalink / raw
To: gentoo-commits
commit: 6a4681dd3b9718c07d5c68e939f20acb0df01846
Author: Gerhard Bräunlich <wippbox <AT> gmx <DOT> net>
AuthorDate: Sat Jan 14 14:11:39 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jan 15 10:12:32 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6a4681dd
sci-visualization/circos: Removing EAPI 4 ebuild
Package-Manager: portage-2.3.0
Closes: https://github.com/gentoo/gentoo/pull/3470
sci-visualization/circos/circos-0.55.ebuild | 36 -----------------------------
1 file changed, 36 deletions(-)
diff --git a/sci-visualization/circos/circos-0.55.ebuild b/sci-visualization/circos/circos-0.55.ebuild
deleted file mode 100644
index 01f7faa..00000000
--- a/sci-visualization/circos/circos-0.55.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-DESCRIPTION="Circular layout visualization of genomic and other data"
-HOMEPAGE="http://mkweb.bcgsc.ca/circos/"
-SRC_URI="http://mkweb.bcgsc.ca/circos/distribution/${P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND="dev-perl/Config-General
- dev-perl/GD
- dev-perl/Math-Bezier
- dev-perl/Math-Round
- dev-perl/Math-VecStat
- dev-perl/Params-Validate
- dev-perl/Readonly
- dev-perl/Regexp-Common
- >=dev-perl/Set-IntSpan-1.11
- dev-perl/Graphics-ColorObject
- dev-perl/List-MoreUtils"
-RDEPEND="${DEPEND}"
-
-src_install() {
- insinto /opt/${PN}
- find * -maxdepth 0 -type d | xargs doins -r
- exeinto /opt/${PN}/bin
- doexe bin/circos bin/gddiag
- dosym /opt/${PN}/bin/circos /usr/bin/circos
- find * -maxdepth 0 -type f | xargs dodoc
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-visualization/circos/
@ 2017-11-25 17:42 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2017-11-25 17:42 UTC (permalink / raw
To: gentoo-commits
commit: ebb153d14e5944706311d03d38bf820fd2dcc643
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Nov 25 16:53:24 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Nov 25 17:41:18 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ebb153d1
sci-visualization/circos: [QA] Consistent whitespace in metadata.xml
sci-visualization/circos/metadata.xml | 24 ++++++++++++------------
1 file changed, 12 insertions(+), 12 deletions(-)
diff --git a/sci-visualization/circos/metadata.xml b/sci-visualization/circos/metadata.xml
index aafe35b9406..ad181eaa8e9 100644
--- a/sci-visualization/circos/metadata.xml
+++ b/sci-visualization/circos/metadata.xml
@@ -1,16 +1,16 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
-</maintainer>
-<longdescription>
- Circos visualizes data in a circular layout — this makes Circos
- ideal for exploring relationships between objects or
- positions. Circos is ideal for creating publication-quality
- infographics and illustrations with a high data-to-ink ratio, richly
- layered data and pleasant symmetries. You have fine control each element
- in the figure to tailor its focus points and detail to your audience.
-</longdescription>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+ <longdescription>
+ Circos visualizes data in a circular layout — this makes Circos
+ ideal for exploring relationships between objects or
+ positions. Circos is ideal for creating publication-quality
+ infographics and illustrations with a high data-to-ink ratio, richly
+ layered data and pleasant symmetries. You have fine control each element
+ in the figure to tailor its focus points and detail to your audience.
+ </longdescription>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-visualization/circos/
@ 2024-01-10 13:35 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2024-01-10 13:35 UTC (permalink / raw
To: gentoo-commits
commit: 33cb541c3a94ea9508407b5d1f90e58c9e4473eb
Author: Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at>
AuthorDate: Thu Dec 28 18:36:02 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Jan 10 13:27:23 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=33cb541c
sci-visualization/circos: version bump (0.69.9)
Signed-off-by: Michael Mair-Keimberger <mmk <AT> levelnine.at>
Closes: https://github.com/gentoo/gentoo/pull/34524
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-visualization/circos/Manifest | 1 +
sci-visualization/circos/circos-0.69.9.ebuild | 55 +++++++++++++++++++++++++++
2 files changed, 56 insertions(+)
diff --git a/sci-visualization/circos/Manifest b/sci-visualization/circos/Manifest
index 0f6d694e6c25..023f77023eac 100644
--- a/sci-visualization/circos/Manifest
+++ b/sci-visualization/circos/Manifest
@@ -1 +1,2 @@
DIST circos-0.55.tgz 10163948 BLAKE2B b4dc821e99ea4ea072b6b2819f257eba920b133f4f4a10ddd119b073c067ba80dff1ffa1377d5b888098d25cf2eea8c92879444bd6a493b3743ab869b45f5302 SHA512 3ebad082acd96b27281e6fcd996fb79022d982a93db59e1f3589a341df7f9855d7554fb92c88c41dc4679e7273d11c0372285a4059ec14a77f11d1d4014db9c1
+DIST circos-0.69-9.tgz 29794907 BLAKE2B 615f3eacdb83ae68c014936b96c1e76280b546dee59bfc1d44aa4f1c09d9962946bd6329107dba6daac4153da5c1e2ac11cf3c658e35b4e9e92184b028144b60 SHA512 2ad8f3def2716a6055deb36c1d44126ce96e23d8fa76c6256b6586ed3bdd641245d885f42424279e8753d9a15385ad73f9f823e27119f16e0be8fc0a01207f37
diff --git a/sci-visualization/circos/circos-0.69.9.ebuild b/sci-visualization/circos/circos-0.69.9.ebuild
new file mode 100644
index 000000000000..90bd68efe9c7
--- /dev/null
+++ b/sci-visualization/circos/circos-0.69.9.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+MY_PN="${PN}-$(ver_rs 2 -)"
+DESCRIPTION="Circular layout visualization of genomic and other data"
+HOMEPAGE="http://circos.ca/"
+SRC_URI="http://circos.ca/distribution/${MY_PN}.tgz"
+S="${WORKDIR}/${MY_PN}"
+
+LICENSE="GPL-2+ GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64"
+
+DEPEND="dev-perl/Config-General
+ dev-perl/Font-TTF
+ dev-perl/GD
+ dev-perl/Math-Bezier
+ dev-perl/Math-Round
+ dev-perl/Math-VecStat
+ dev-perl/Params-Validate
+ dev-perl/Readonly
+ dev-perl/Regexp-Common
+ dev-perl/Set-IntSpan
+ dev-perl/Statistics-Basic
+ dev-perl/SVG
+ dev-perl/Text-Format
+ dev-perl/Graphics-ColorObject
+ dev-perl/List-MoreUtils"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+ # remove windows only things
+ rm -r "${S}/bin/${PN}.exe" || die
+ rm -r "${S}/bin/compile.bat" || die
+ default
+}
+
+src_install() {
+ insinto /opt/${PN}
+ doins -r */
+
+ exeinto /opt/${PN}/bin
+ doexe bin/circos bin/gddiag
+
+ dosym ../../opt/${PN}/bin/circos /usr/bin/circos
+
+ einstalldocs
+
+ local d
+ while IFS="" read -d $'\0' -r d; do
+ dodoc "${d}"
+ done < <(find * -maxdepth 0 -type f -print0)
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-visualization/circos/
@ 2024-04-28 7:26 Arthur Zamarin
0 siblings, 0 replies; 6+ messages in thread
From: Arthur Zamarin @ 2024-04-28 7:26 UTC (permalink / raw
To: gentoo-commits
commit: 5118757e6dc96bbd2e10bc793391f22fe6eff98d
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Sun Apr 28 07:25:55 2024 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Sun Apr 28 07:25:55 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5118757e
sci-visualization/circos: drop 0.55-r1, EAPI6--
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
sci-visualization/circos/Manifest | 1 -
sci-visualization/circos/circos-0.55-r1.ebuild | 42 --------------------------
2 files changed, 43 deletions(-)
diff --git a/sci-visualization/circos/Manifest b/sci-visualization/circos/Manifest
index 023f77023eac..a21ef6f3aea6 100644
--- a/sci-visualization/circos/Manifest
+++ b/sci-visualization/circos/Manifest
@@ -1,2 +1 @@
-DIST circos-0.55.tgz 10163948 BLAKE2B b4dc821e99ea4ea072b6b2819f257eba920b133f4f4a10ddd119b073c067ba80dff1ffa1377d5b888098d25cf2eea8c92879444bd6a493b3743ab869b45f5302 SHA512 3ebad082acd96b27281e6fcd996fb79022d982a93db59e1f3589a341df7f9855d7554fb92c88c41dc4679e7273d11c0372285a4059ec14a77f11d1d4014db9c1
DIST circos-0.69-9.tgz 29794907 BLAKE2B 615f3eacdb83ae68c014936b96c1e76280b546dee59bfc1d44aa4f1c09d9962946bd6329107dba6daac4153da5c1e2ac11cf3c658e35b4e9e92184b028144b60 SHA512 2ad8f3def2716a6055deb36c1d44126ce96e23d8fa76c6256b6586ed3bdd641245d885f42424279e8753d9a15385ad73f9f823e27119f16e0be8fc0a01207f37
diff --git a/sci-visualization/circos/circos-0.55-r1.ebuild b/sci-visualization/circos/circos-0.55-r1.ebuild
deleted file mode 100644
index bfac5b3544a9..000000000000
--- a/sci-visualization/circos/circos-0.55-r1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Circular layout visualization of genomic and other data"
-HOMEPAGE="http://mkweb.bcgsc.ca/circos/"
-SRC_URI="http://mkweb.bcgsc.ca/circos/distribution/${P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND="dev-perl/Config-General
- dev-perl/GD
- dev-perl/Math-Bezier
- dev-perl/Math-Round
- dev-perl/Math-VecStat
- dev-perl/Params-Validate
- dev-perl/Readonly
- dev-perl/Regexp-Common
- >=dev-perl/Set-IntSpan-1.11
- dev-perl/Graphics-ColorObject
- dev-perl/List-MoreUtils"
-RDEPEND="${DEPEND}"
-
-src_install() {
- insinto /opt/${PN}
- doins -r */
-
- exeinto /opt/${PN}/bin
- doexe bin/circos bin/gddiag
-
- dosym /opt/${PN}/bin/circos /usr/bin/circos
-
- einstalldocs
- local d
- while IFS="" read -d $'\0' -r d; do
- dodoc "${d}"
- done < <(find * -maxdepth 0 -type f -print0)
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
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