[gentoo-commits] repo/gentoo:master commit in: sci-biology/mira/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/mira/

[Justin Lecher]

commit:     a80f62f49f5f4fe6ded3fbb07840e48ddd6de4e0
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 18 18:45:20 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Aug 18 18:45:20 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a80f62f4

sci-biology/mira: Add missing USE dep for boost[threads]

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=558092

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/mira/mira-4.0.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild
index 3fa476c..b89246b 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2.ebuild
@@ -25,7 +25,7 @@ KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos"
 IUSE="doc"
 
 CDEPEND="
-	dev-libs/boost
+	dev-libs/boost[threads]
 	dev-util/google-perftools"
 DEPEND="${CDEPEND}
 	app-editors/vim-core

[gentoo-commits] repo/gentoo:master commit in: sci-biology/mira/

[Lars Wendler]

commit:     fcdf7766b661a2b8c881a728792b25d7eec18f5a
Author:     Nicholas Vinson <nvinson234 <AT> gmail <DOT> com>
AuthorDate: Wed Jan 11 15:57:17 2017 +0000
Commit:     Lars Wendler <polynomial-c <AT> gentoo <DOT> org>
CommitDate: Wed Jan 11 17:16:03 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fcdf7766

sci-biology/mira: Force rebuild of lexer C++ source files

Upstream ships pregenerated C++ source files for its lexers.  These
files fail to compile under newer versions of GCC.  This update forces
them to be rebuilt by removing them before compilaiton starts.

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/mira/mira-4.0.2.ebuild | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild
index 9de22bb..9413101 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -49,6 +49,17 @@ src_prepare() {
 		-i configure.ac || die
 
 	eautoreconf
+
+	# Remove C++ source files that were built with flex by upstream.
+	local f
+	local PREBUILT_CXX_LEXER_FILES=(
+		"$S"/src/io/exp_flexer.cc
+		"$S"/src/mira/parameters_flexer.cc
+	)
+
+	for f in "${PREBUILT_CXX_LEXER_FILES[@]}"; do
+		[[ -f $f ]] && { rm "$f" || die "Failed to remove $f"; } || die "$f not found"
+	done
 }
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-biology/mira/

[Lars Wendler]

commit:     de9c2f4d1cf3715c403d3214d4e4cf21c24acd10
Author:     Lars Wendler <polynomial-c <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 11 17:15:49 2017 +0000
Commit:     Lars Wendler <polynomial-c <AT> gentoo <DOT> org>
CommitDate: Wed Jan 11 17:16:06 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=de9c2f4d

sci-biology/mira: Adjusted sys-devel/flex dependency.

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/mira/mira-4.0.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild
index 9413101..3814d2d 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2.ebuild
@@ -28,7 +28,7 @@ CDEPEND="
 	dev-libs/boost[threads]
 	dev-util/google-perftools"
 DEPEND="${CDEPEND}
-	<sys-devel/flex-2.6.0
+	sys-devel/flex
 	app-editors/vim-core
 	dev-libs/expat"
 RDEPEND="${CDEPEND}"

[gentoo-commits] repo/gentoo:master commit in: sci-biology/mira/

[Fabian Groffen]

commit:     f9e36fa4a6b8b2eefd0c4bad521cdabed31408d0
Author:     Fabian Groffen <grobian <AT> gentoo <DOT> org>
AuthorDate: Wed Jan  6 15:09:04 2021 +0000
Commit:     Fabian Groffen <grobian <AT> gentoo <DOT> org>
CommitDate: Wed Jan  6 15:09:04 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f9e36fa4

sci-biology/mira: drop x86-macos

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Fabian Groffen <grobian <AT> gentoo.org>

 sci-biology/mira/mira-4.0.2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild
index f5ac6cfe70f..ddd64d3cd5e 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -20,7 +20,7 @@ S="${WORKDIR}"/"${PN}"-"${MY_PV}"
 
 SLOT="0"
 LICENSE="GPL-2"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
 IUSE="doc"
 
 CDEPEND="

[gentoo-commits] repo/gentoo:master commit in: sci-biology/mira/

[David Seifert]

commit:     50a9003c5271849aba5e4525ae925de9ba68c349
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 18 19:17:20 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri Jun 18 19:17:20 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=50a9003c

sci-biology/mira: Depend on dev-libs/boost:=[threads(+)]

Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/mira/{mira-4.0.2.ebuild => mira-4.0.2-r1.ebuild} | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2-r1.ebuild
similarity index 98%
rename from sci-biology/mira/mira-4.0.2.ebuild
rename to sci-biology/mira/mira-4.0.2-r1.ebuild
index c37fa233312..cbd1309c474 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2-r1.ebuild
@@ -24,7 +24,7 @@ KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
 IUSE="doc"
 
 CDEPEND="
-	dev-libs/boost[threads]
+	dev-libs/boost:=[threads(+)]
 	dev-util/google-perftools"
 DEPEND="${CDEPEND}
 	sys-devel/flex