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* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-01-09 16:13 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-01-09 16:13 UTC (permalink / raw
  To: gentoo-commits

commit:     04e413e188afb955661634805f602e744d3ec5c4
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan  9 16:12:34 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan  9 16:12:34 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=04e413e1

sci-biology/ESTate: new package

Package-Manager: portage-2.2.7

---
 sci-biology/ESTate/ChangeLog         |  9 +++++++++
 sci-biology/ESTate/ESTate-0.5.ebuild | 32 ++++++++++++++++++++++++++++++++
 sci-biology/ESTate/metadata.xml      |  9 +++++++++
 3 files changed, 50 insertions(+)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
new file mode 100644
index 0000000..52cfa8c
--- /dev/null
+++ b/sci-biology/ESTate/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/ESTate
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ESTate-0.5 (09 Jan 2015)
+
+  09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +ESTate-0.5.ebuild,
+  +metadata.xml:
+  sci-biology/ESTate: new package

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
new file mode 100644
index 0000000..5b9f468
--- /dev/null
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="EST clustering tools (estcluster, usage counter, revcomp and translate)"
+HOMEPAGE="http://www.ebi.ac.uk/~guy/estate"
+SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/estate
+
+src_prepare(){
+	sed -e "s/^CC/#CC/" -e "s/^LDFLAGS/#LDFLAGS/" -e "s/^CFLAGS/#CFLAGS/" -e "s/LDFLAGS/CFLAGS/" -i src/Makefile || die
+}
+
+src_install(){
+	dobin bin/*
+	doman doc/man/man1/*.1 doc/man/man7/*.7
+	insinto /usr/share/ESTate/etc
+	doins etc/ESTaterc
+	dodoc ANNOUNCE.txt README.txt
+	einfo "Additionally you may want to install sci-biology/wcd which can be used by ESTate"
+}

diff --git a/sci-biology/ESTate/metadata.xml b/sci-biology/ESTate/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/ESTate/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-01-09 17:15 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-01-09 17:15 UTC (permalink / raw
  To: gentoo-commits

commit:     319bfe2c5fe2d5ffc011000547a814696300a8ff
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan  9 17:14:11 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan  9 17:14:11 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=319bfe2c

add the PhD thesis itself as documentation

Package-Manager: portage-2.2.7

---
 sci-biology/ESTate/ChangeLog         | 3 +++
 sci-biology/ESTate/ESTate-0.5.ebuild | 4 +++-
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index 52cfa8c..6ae928b 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
+  add the PhD thesis itself as documentation
+
 *ESTate-0.5 (09 Jan 2015)
 
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +ESTate-0.5.ebuild,

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index 5b9f468..989e5f2 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -6,7 +6,8 @@ EAPI=5
 
 DESCRIPTION="EST clustering tools (estcluster, usage counter, revcomp and translate)"
 HOMEPAGE="http://www.ebi.ac.uk/~guy/estate"
-SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz"
+SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz
+	http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
@@ -28,5 +29,6 @@ src_install(){
 	insinto /usr/share/ESTate/etc
 	doins etc/ESTaterc
 	dodoc ANNOUNCE.txt README.txt
+	dodoc "${DISTDIR}"/thesis.ps.gz
 	einfo "Additionally you may want to install sci-biology/wcd which can be used by ESTate"
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-01-09 17:30 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-01-09 17:30 UTC (permalink / raw
  To: gentoo-commits

commit:     72826ae7fd740933822987a2922daaa22dbb26d8
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan  9 17:29:47 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan  9 17:29:47 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=72826ae7

add the probability matrices

Package-Manager: portage-2.2.7

---
 sci-biology/ESTate/ChangeLog         | 3 +++
 sci-biology/ESTate/ESTate-0.5.ebuild | 2 ++
 2 files changed, 5 insertions(+)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index 6ae928b..628daf7 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -3,6 +3,9 @@
 # $Header: $
 
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
+  add the probability matrices
+
+  09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
   add the PhD thesis itself as documentation
 
 *ESTate-0.5 (09 Jan 2015)

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index 989e5f2..54704d4 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -28,6 +28,8 @@ src_install(){
 	doman doc/man/man1/*.1 doc/man/man7/*.7
 	insinto /usr/share/ESTate/etc
 	doins etc/ESTaterc
+	doins /usr/share/ESTate/example
+	doins example/embl59* example/drosophila*
 	dodoc ANNOUNCE.txt README.txt
 	dodoc "${DISTDIR}"/thesis.ps.gz
 	einfo "Additionally you may want to install sci-biology/wcd which can be used by ESTate"


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-01-09 17:34 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-01-09 17:34 UTC (permalink / raw
  To: gentoo-commits

commit:     74d14fc07ea7c08a447ef8f9d5e14b360f868af2
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan  9 17:33:22 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan  9 17:33:22 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=74d14fc0

use 'insinto' and not 'doins'

Package-Manager: portage-2.2.7

---
 sci-biology/ESTate/ChangeLog         | 3 +++
 sci-biology/ESTate/ESTate-0.5.ebuild | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index 628daf7..c5cae89 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -3,6 +3,9 @@
 # $Header: $
 
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
+  use 'insinto' and not 'doins'
+
+  09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
   add the probability matrices
 
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index 54704d4..7fc7970 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -28,7 +28,7 @@ src_install(){
 	doman doc/man/man1/*.1 doc/man/man7/*.7
 	insinto /usr/share/ESTate/etc
 	doins etc/ESTaterc
-	doins /usr/share/ESTate/example
+	insinto /usr/share/ESTate/example
 	doins example/embl59* example/drosophila*
 	dodoc ANNOUNCE.txt README.txt
 	dodoc "${DISTDIR}"/thesis.ps.gz


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-01-09 17:56 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-01-09 17:56 UTC (permalink / raw
  To: gentoo-commits

commit:     1665dd570b59a6962d18316b9e65f672747f1c88
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan  9 17:55:46 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan  9 17:55:46 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1665dd57

improve description and emphasize the ORF finder can overcome frameshifts in CDS

Package-Manager: portage-2.2.7

---
 sci-biology/ESTate/ChangeLog         | 4 ++++
 sci-biology/ESTate/ESTate-0.5.ebuild | 2 +-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index c5cae89..0e86bdb 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -3,6 +3,10 @@
 # $Header: $
 
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
+  improve description and emphasize the ORF finder can overcome frameshifts in
+  CDS
+
+  09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
   use 'insinto' and not 'doins'
 
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index 7fc7970..3e459b0 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-DESCRIPTION="EST clustering tools (estcluster, usage counter, revcomp and translate)"
+DESCRIPTION="ORF finding despite frameshifts, EST clustering (framefinder, estcluster, usage counter, revcomp and translate)"
 HOMEPAGE="http://www.ebi.ac.uk/~guy/estate"
 SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz
 	http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz"


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-01-10 14:37 Justin Lecher
  0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2015-01-10 14:37 UTC (permalink / raw
  To: gentoo-commits

commit:     fb4ef931e8f0177f06753635416595180b789995
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 10 14:17:58 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 10 14:17:58 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fb4ef931

sci-biology/ESTate: Soma QA and polishing

Package-Manager: portage-2.2.15

---
 sci-biology/ESTate/ChangeLog         |  3 +++
 sci-biology/ESTate/ESTate-0.5.ebuild | 28 +++++++++++++++++++---------
 2 files changed, 22 insertions(+), 9 deletions(-)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index 0e86bdb..879e7b4 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher <jlec@gentoo.org> ESTate-0.5.ebuild:
+  Soma QA and polishing
+
   09 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
   improve description and emphasize the ORF finder can overcome frameshifts in
   CDS

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index 3e459b0..1622516 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -4,9 +4,12 @@
 
 EAPI=5
 
-DESCRIPTION="ORF finding despite frameshifts, EST clustering (framefinder, estcluster, usage counter, revcomp and translate)"
+inherit eutils
+
+DESCRIPTION="ORF finding despite frameshifts, EST clustering"
 HOMEPAGE="http://www.ebi.ac.uk/~guy/estate"
-SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz
+SRC_URI="
+	http://www.ebi.ac.uk/~guy/estate/estate.tar.gz
 	http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz"
 
 LICENSE="GPL-2"
@@ -14,23 +17,30 @@ SLOT="0"
 KEYWORDS="~amd64"
 IUSE=""
 
-DEPEND=""
-RDEPEND="${DEPEND}"
-
 S="${WORKDIR}"/estate
 
 src_prepare(){
-	sed -e "s/^CC/#CC/" -e "s/^LDFLAGS/#LDFLAGS/" -e "s/^CFLAGS/#CFLAGS/" -e "s/LDFLAGS/CFLAGS/" -i src/Makefile || die
+	sed \
+		-e "s/^CC/#CC/" \
+		-e "s/^LDFLAGS/#LDFLAGS/" \
+		-e "s/^CFLAGS/#CFLAGS/" \
+		-e "s/LDFLAGS/CFLAGS/" \
+		-i src/Makefile || die
 }
 
 src_install(){
 	dobin bin/*
 	doman doc/man/man1/*.1 doc/man/man7/*.7
+
 	insinto /usr/share/ESTate/etc
 	doins etc/ESTaterc
+
 	insinto /usr/share/ESTate/example
 	doins example/embl59* example/drosophila*
-	dodoc ANNOUNCE.txt README.txt
-	dodoc "${DISTDIR}"/thesis.ps.gz
-	einfo "Additionally you may want to install sci-biology/wcd which can be used by ESTate"
+
+	dodoc ANNOUNCE.txt README.txt "${DISTDIR}"/thesis.ps.gz
+}
+
+pkg_postinst() {
+	optfeature "additional features" sci-biology/wcd
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2015-04-18  0:55 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-04-18  0:55 UTC (permalink / raw
  To: gentoo-commits

commit:     8bbbf78fcf81607816082c4e36840c972fde539d
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Apr 18 00:02:28 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Apr 18 00:02:28 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8bbbf78f

sci-biology/ESTate: track file collision

Package-Manager: portage-2.2.18

 sci-biology/ESTate/ChangeLog         | 3 +++
 sci-biology/ESTate/ESTate-0.5.ebuild | 5 +++++
 2 files changed, 8 insertions(+)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index 879e7b4..7d523e9 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> ESTate-0.5.ebuild:
+  sci-biology/ESTate: track file collision
+
   10 Jan 2015; Justin Lecher <jlec@gentoo.org> ESTate-0.5.ebuild:
   Soma QA and polishing
 

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index 1622516..63c8966 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -28,6 +28,11 @@ src_prepare(){
 		-i src/Makefile || die
 }
 
+# Detected file collision(s) versus sci-biology/hmmer-2.3.2-r2:
+#  * sci-biology/ESTate-0.5:0::science
+#  *      /usr/bin/revcomp
+#  *      /usr/bin/translate
+
 src_install(){
 	dobin bin/*
 	doman doc/man/man1/*.1 doc/man/man7/*.7


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/
@ 2017-01-10  0:59 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2017-01-10  0:59 UTC (permalink / raw
  To: gentoo-commits

commit:     932231c6e6287f4f77189a6ae65b5885e1c7419a
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 10 00:31:44 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 10 00:31:44 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=932231c6

sci-biology/ESTate: avoid file collisions

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/ESTate/ESTate-0.5.ebuild | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild
index f48399d..aa66bcd 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -28,12 +28,12 @@ src_prepare(){
 		-i src/Makefile || die
 }
 
-# Detected file collision(s) versus sci-biology/hmmer-2.3.2-r2:
-#  * sci-biology/ESTate-0.5:0::science
-#  *      /usr/bin/revcomp
-#  *      /usr/bin/translate
-
 src_install(){
+	# prevent file collision with sci-biology/hmmer-2.3.2
+	newbin bin/{revcomp,revcomp_ESTate}
+	rm bin/revcomp || die
+	newbin bin/{translate,translate_ESTate}
+	rm bin/translate || die
 	dobin bin/*
 	doman doc/man/man1/*.1 doc/man/man7/*.7
 


^ permalink raw reply related	[flat|nested] 8+ messages in thread

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