* [gentoo-commits] proj/sci:master commit in: dev-libs/beignet/files/, sci-physics/rivet/, sci-physics/herwig++/files/, ...
@ 2017-01-03 9:16 Marius Brehler
0 siblings, 0 replies; only message in thread
From: Marius Brehler @ 2017-01-03 9:16 UTC (permalink / raw
To: gentoo-commits
commit: 663b10561af76c1fcbe754c6b594e5ec3f4fb259
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 2 16:22:32 2017 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Mon Jan 2 16:22:32 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=663b1056
removed packages in main tree
dev-libs/beignet/beignet-1.2.0.ebuild | 96 ---
.../beignet/files/llvm-empty-system-libs.patch | 11 -
dev-libs/beignet/files/llvm-terminfo.patch | 20 -
dev-libs/beignet/files/no-debian-multiarch.patch | 39 -
dev-libs/beignet/files/no-hardcoded-cflags.patch | 13 -
dev-libs/beignet/metadata.xml | 8 -
.../files/superlu_mt-2.1-duplicate-symbols.patch | 900 ---------------------
.../files/superlu_mt-2.1-missing-includes.patch | 44 -
sci-libs/superlu_mt/metadata.xml | 26 -
sci-libs/superlu_mt/superlu_mt-2.1.ebuild | 110 ---
sci-misc/fitscut/fitscut-1.4.4.ebuild | 39 -
sci-misc/fitscut/metadata.xml | 14 -
.../herwig++/files/herwig++-2.6.3-looptools.patch | 64 --
sci-physics/herwig++/herwig++-2.7.0-r2.ebuild | 57 --
sci-physics/herwig++/metadata.xml | 23 -
.../looptools/files/looptools-2.10-makefile.patch | 98 ---
.../looptools/files/looptools-2.8-makefile.patch | 96 ---
sci-physics/looptools/looptools-2.10.ebuild | 39 -
sci-physics/looptools/looptools-2.11.ebuild | 39 -
sci-physics/looptools/looptools-2.9.ebuild | 39 -
sci-physics/looptools/metadata.xml | 15 -
sci-physics/rivet/metadata.xml | 19 -
sci-physics/rivet/rivet-2.1.1.ebuild | 62 --
sci-physics/rivet/rivet-2.1.2.ebuild | 62 --
sci-physics/yoda/metadata.xml | 18 -
sci-physics/yoda/yoda-1.0.6.ebuild | 50 --
26 files changed, 2001 deletions(-)
diff --git a/dev-libs/beignet/beignet-1.2.0.ebuild b/dev-libs/beignet/beignet-1.2.0.ebuild
deleted file mode 100644
index 8d42db8..0000000
--- a/dev-libs/beignet/beignet-1.2.0.ebuild
+++ /dev/null
@@ -1,96 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-CMAKE_BUILD_TYPE="Release"
-
-inherit python-any-r1 cmake-multilib toolchain-funcs
-
-DESCRIPTION="OpenCL implementation for Intel GPUs"
-HOMEPAGE="https://01.org/beignet"
-
-LICENSE="LGPL-2.1+"
-SLOT="0"
-
-if [[ "${PV}" == "9999" ]]; then
- inherit git-r3
- EGIT_REPO_URI="git://anongit.freedesktop.org/beignet"
- KEYWORDS=""
-else
- KEYWORDS="~amd64"
- SRC_URI="https://01.org/sites/default/files/${P}-source.tar.gz"
- S=${WORKDIR}/Beignet-${PV}-Source
-fi
-
-COMMON="${PYTHON_DEPS}
- media-libs/mesa
- sys-devel/clang
- >=sys-devel/llvm-3.5
- x11-libs/libdrm[video_cards_intel]
- x11-libs/libXext
- x11-libs/libXfixes"
-RDEPEND="${COMMON}
- app-eselect/eselect-opencl"
-DEPEND="${COMMON}
- virtual/pkgconfig"
-
-PATCHES=(
- "${FILESDIR}"/no-debian-multiarch.patch
- "${FILESDIR}"/no-hardcoded-cflags.patch
- "${FILESDIR}"/llvm-terminfo.patch
- "${FILESDIR}"/llvm-empty-system-libs.patch
-)
-
-DOCS=(
- docs/.
-)
-
-pkg_pretend() {
- if [[ ${MERGE_TYPE} != "binary" ]]; then
- if tc-is-gcc; then
- if [[ $(gcc-major-version) -eq 4 ]] && [[ $(gcc-minor-version) -lt 6 ]]; then
- eerror "Compilation with gcc older than 4.6 is not supported"
- die "Too old gcc found."
- fi
- fi
- fi
-}
-
-pkg_setup() {
- python_setup
-}
-
-src_prepare() {
- cmake-utils_src_prepare
- # We cannot run tests because they require permissions to access
- # the hardware, and building them is very time-consuming.
- cmake_comment_add_subdirectory utests
-}
-
-multilib_src_configure() {
- VENDOR_DIR="/usr/$(get_libdir)/OpenCL/vendors/${PN}"
-
- local mycmakeargs=(
- -DCMAKE_INSTALL_PREFIX="${VENDOR_DIR}"
- )
-
- cmake-utils_src_configure
-}
-
-multilib_src_install() {
- VENDOR_DIR="/usr/$(get_libdir)/OpenCL/vendors/${PN}"
-
- cmake-utils_src_install
-
- insinto /etc/OpenCL/vendors/
- echo "${VENDOR_DIR}/lib/${PN}/libcl.so" > "${PN}-${ABI}.icd" || die "Failed to generate ICD file"
- doins "${PN}-${ABI}.icd"
-
- dosym "lib/${PN}/libcl.so" "${VENDOR_DIR}"/libOpenCL.so.1
- dosym "lib/${PN}/libcl.so" "${VENDOR_DIR}"/libOpenCL.so
- dosym "lib/${PN}/libcl.so" "${VENDOR_DIR}"/libcl.so.1
- dosym "lib/${PN}/libcl.so" "${VENDOR_DIR}"/libcl.so
-}
diff --git a/dev-libs/beignet/files/llvm-empty-system-libs.patch b/dev-libs/beignet/files/llvm-empty-system-libs.patch
deleted file mode 100644
index d5e0cd7..0000000
--- a/dev-libs/beignet/files/llvm-empty-system-libs.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/CMake/FindLLVM.cmake 2015-12-18 06:39:59.000000000 +0000
-+++ b/CMake/FindLLVM.cmake 2016-08-31 15:05:11.210679204 +0000
-@@ -99,7 +99,7 @@
- OUTPUT_VARIABLE LLVM_SYSTEM_LIBS_ORIG
- OUTPUT_STRIP_TRAILING_WHITESPACE
- )
--string(REGEX REPLACE " *\n" "" LLVM_SYSTEM_LIBS ${LLVM_SYSTEM_LIBS_ORIG})
-+string(REGEX REPLACE " *\n" "" LLVM_SYSTEM_LIBS "${LLVM_SYSTEM_LIBS_ORIG}")
- endif (LLVM_VERSION_NODOT VERSION_GREATER 34)
-
- macro(add_one_lib name)
diff --git a/dev-libs/beignet/files/llvm-terminfo.patch b/dev-libs/beignet/files/llvm-terminfo.patch
deleted file mode 100644
index afbbc26..0000000
--- a/dev-libs/beignet/files/llvm-terminfo.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- a/backend/src/CMakeLists.txt 2015-12-18 07:40:03.000000000 +0100
-+++ b/backend/src/CMakeLists.txt 2016-08-01 13:44:31.475875150 +0200
-@@ -153,7 +153,7 @@
-
- add_library(gbeinterp SHARED gbe_bin_interpreter.cpp)
-
--if (LLVM_VERSION_NODOT VERSION_EQUAL 34)
-+if (NOT (LLVM_VERSION_NODOT LESS 34))
- find_library(TERMINFO NAMES tinfo ncurses)
- if (${TERMINFO} STREQUAL TERMINFO-NOTFOUND)
- message(FATAL_ERROR "no libtinfo or libncurses is found in system")
-@@ -161,7 +161,7 @@
- target_link_libraries(gbe ${TERMINFO})
- message(STATUS "use ${TERMINFO} as terminal control library")
- endif (${TERMINFO} STREQUAL TERMINFO-NOTFOUND)
--endif(LLVM_VERSION_NODOT VERSION_EQUAL 34)
-+endif(NOT (LLVM_VERSION_NODOT LESS 34))
-
- link_directories (${LLVM_LIBRARY_DIR} ${DRM_LIBDIR})
-
diff --git a/dev-libs/beignet/files/no-debian-multiarch.patch b/dev-libs/beignet/files/no-debian-multiarch.patch
deleted file mode 100644
index c9aef4d..0000000
--- a/dev-libs/beignet/files/no-debian-multiarch.patch
+++ /dev/null
@@ -1,39 +0,0 @@
---- a/CMakeLists.txt 2015-04-17 04:27:51.000000000 +0200
-+++ b/CMakeLists.txt 2015-05-20 20:59:17.895041760 +0200
-@@ -39,14 +39,9 @@
-
- SET(CMAKE_VERBOSE_MAKEFILE "false")
- set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/CMake/")
--INCLUDE (GNUInstallDirs OPTIONAL)
--# support old CMake without GNUInstallDirs
--if (NOT CMAKE_INSTALL_FULL_LIBDIR)
-- set (CMAKE_INSTALL_FULL_LIBDIR "${CMAKE_INSTALL_PREFIX}/lib")
-- set (BEIGNET_LIBRARY_ARCHITECTURE "")
--else (NOT CMAKE_INSTALL_FULL_LIBDIR)
-- set (BEIGNET_LIBRARY_ARCHITECTURE "${CMAKE_LIBRARY_ARCHITECTURE}")
--endif (NOT CMAKE_INSTALL_FULL_LIBDIR)
-+
-+set (CMAKE_INSTALL_FULL_LIBDIR "${CMAKE_INSTALL_PREFIX}/lib")
-+set (BEIGNET_LIBRARY_ARCHITECTURE "")
-
- if (NOT LIB_INSTALL_DIR)
- set (LIB_INSTALL_DIR "${CMAKE_INSTALL_FULL_LIBDIR}")
-@@ -55,17 +50,7 @@
- set (BEIGNET_INSTALL_DIR "${LIB_INSTALL_DIR}/beignet/")
- endif (NOT BEIGNET_INSTALL_DIR)
-
--# allow co-installation of 32- and 64-bit versions:
--# https://wiki.debian.org/Multiarch
--if (BEIGNET_INSTALL_DIR STREQUAL "${CMAKE_INSTALL_PREFIX}/lib/beignet/")
-- set (ICD_FILE_NAME "intel-beignet.icd")
--else (BEIGNET_INSTALL_DIR STREQUAL "${CMAKE_INSTALL_PREFIX}/lib/beignet/")
-- if (BEIGNET_LIBRARY_ARCHITECTURE STREQUAL "")
-- set (ICD_FILE_NAME "intel-beignet.icd")
-- else (BEIGNET_LIBRARY_ARCHITECTURE STREQUAL "")
-- set (ICD_FILE_NAME "intel-beignet-${BEIGNET_LIBRARY_ARCHITECTURE}.icd")
-- endif (BEIGNET_LIBRARY_ARCHITECTURE STREQUAL "")
--endif (BEIGNET_INSTALL_DIR STREQUAL "${CMAKE_INSTALL_PREFIX}/lib/beignet/")
-+set (ICD_FILE_NAME "intel-beignet.icd")
-
- # Force Release with debug info
- if (NOT CMAKE_BUILD_TYPE)
diff --git a/dev-libs/beignet/files/no-hardcoded-cflags.patch b/dev-libs/beignet/files/no-hardcoded-cflags.patch
deleted file mode 100644
index 3dd67b7..0000000
--- a/dev-libs/beignet/files/no-hardcoded-cflags.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- a/CMakeLists.txt 2016-08-31 17:13:26.000000000 +0000
-+++ b/CMakeLists.txt 2016-08-31 17:00:40.000000000 +0000
-@@ -70,8 +70,8 @@
- elseif (COMPILER STREQUAL "ICC")
- set (CMAKE_C_CXX_FLAGS "${CMAKE_C_CXX_FLAGS} -wd2928 -Wall -fPIC -fstrict-aliasing -fp-model fast -msse4.1 -Wl,-E")
- endif ()
--set (CMAKE_CXX_FLAGS "${CMAKE_C_CXX_FLAGS} -std=c++0x -Wno-invalid-offsetof")
--set (CMAKE_C_FLAGS "${CMAKE_C_CXX_FLAGS}")
-+set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++0x -Wno-invalid-offsetof")
-+set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
- set (CMAKE_CXX_FLAGS_DEBUG "-O0 -g -DGBE_DEBUG=1")
- set (CMAKE_CXX_FLAGS_RELWITHDEBINFO "-O2 -g -DGBE_DEBUG=1")
- set (CMAKE_CXX_FLAGS_MINSIZEREL "-Os -DNDEBUG -DGBE_DEBUG=0")
diff --git a/dev-libs/beignet/metadata.xml b/dev-libs/beignet/metadata.xml
deleted file mode 100644
index 3e5026e..0000000
--- a/dev-libs/beignet/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>marecki@gentoo.org</email>
- <name>Marek Szuba</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-libs/superlu_mt/files/superlu_mt-2.1-duplicate-symbols.patch b/sci-libs/superlu_mt/files/superlu_mt-2.1-duplicate-symbols.patch
deleted file mode 100644
index 6b2c5d5..0000000
--- a/sci-libs/superlu_mt/files/superlu_mt-2.1-duplicate-symbols.patch
+++ /dev/null
@@ -1,900 +0,0 @@
-diff -Nur SRC.orig/cmatgen.c SRC/cmatgen.c
---- SRC.orig/cmatgen.c 2013-07-15 11:47:52.512735420 -0700
-+++ SRC/cmatgen.c 2013-07-15 11:49:05.149137948 -0700
-@@ -93,76 +93,4 @@
- xa[n] = lasta;
- }
-
--double dlaran_(int *iseed)
--{
--/* -- LAPACK auxiliary routine (version 2.0) --
-- Univ. of Tennessee, Univ. of California Berkeley, NAG Ltd.,
-- Courant Institute, Argonne National Lab, and Rice University
-- February 29, 1992
--
-- Purpose
-- =======
--
-- DLARAN returns a random real number from a uniform (0,1)
-- distribution.
--
-- Arguments
-- =========
--
-- ISEED (input/output) INT array, dimension (4)
-- On entry, the seed of the random number generator; the array
--
-- elements must be between 0 and 4095, and ISEED(4) must be
-- odd.
-- On exit, the seed is updated.
--
-- Further Details
-- ===============
--
-- This routine uses a multiplicative congruential method with modulus
-- 2**48 and multiplier 33952834046453 (see G.S.Fishman,
-- 'Multiplicative congruential random number generators with modulus
-- 2**b: an exhaustive analysis for b = 32 and a partial analysis for
-- b = 48', Math. Comp. 189, pp 331-344, 1990).
--
-- 48-bit integers are stored in 4 integer array elements with 12 bits
-- per element. Hence the routine is portable across machines with
-- integers of 32 bits or more.
--
-- =====================================================================
--*/
--
-- /* Local variables */
-- int it1, it2, it3, it4;
--
-- --iseed;
--
-- /* multiply the seed by the multiplier modulo 2**48 */
-- it4 = iseed[4] * 2549;
-- it3 = it4 / 4096;
-- it4 -= it3 << 12;
-- it3 = it3 + iseed[3] * 2549 + iseed[4] * 2508;
-- it2 = it3 / 4096;
-- it3 -= it2 << 12;
-- it2 = it2 + iseed[2] * 2549 + iseed[3] * 2508 + iseed[4] * 322;
-- it1 = it2 / 4096;
-- it2 -= it1 << 12;
-- it1 = it1 + iseed[1] * 2549 + iseed[2] * 2508 + iseed[3] * 322 + iseed[4]
-- * 494;
-- it1 %= 4096;
--
-- /* return updated seed */
--
-- iseed[1] = it1;
-- iseed[2] = it2;
-- iseed[3] = it3;
-- iseed[4] = it4;
--
-- /* convert 48-bit integer to a real number in the interval (0,1) */
--
-- return ((double) it1 +
-- ((double) it2 + ((double) it3 + (double) it4 * 2.44140625e-4) *
-- 2.44140625e-4) * 2.44140625e-4) * 2.44140625e-4;
--
--} /* dlaran_ */
-
-diff -Nur SRC.orig/cmyblas2.c SRC/cmyblas2.c
---- SRC.orig/cmyblas2.c 2013-07-15 11:47:52.509735400 -0700
-+++ SRC/cmyblas2.c 2013-07-15 11:49:05.149137948 -0700
-@@ -183,3 +183,127 @@
-
- }
-
-+/*
-+ * Performs dense matrix-vector multiply with 2 vectors:
-+ * y0 = y0 + A * x0
-+ * y1 = y1 + A * x1
-+ */
-+void cmatvec2 (
-+ int lda, /* leading dimension of A */
-+ int m,
-+ int n,
-+ complex *A, /* in - size m-by-n */
-+ complex *x0, /* in - size n-by-1 */
-+ complex *x1, /* in - size n-by-1 */
-+ complex *y0, /* out - size n-by-1 */
-+ complex *y1 /* out - size n-by-1 */
-+ )
-+
-+{
-+ complex v00, v10, v20, v30, v40, v50, v60, v70,
-+ v01, v11, v21, v31, v41, v51, v61, v71;
-+ complex t0, t1, t2, t3, t4, t5, t6, t7;
-+ complex f0, f1;
-+ complex *Mki0, *Mki1, *Mki2, *Mki3, *Mki4, *Mki5, *Mki6, *Mki7;
-+ register int firstcol = 0;
-+ complex *M0, temp;
-+ int k;
-+
-+ M0 = &A[0];
-+
-+ while ( firstcol < n - 7 ) { /* Do 8 columns */
-+
-+ Mki0 = M0;
-+ Mki1 = Mki0 + lda;
-+ Mki2 = Mki1 + lda;
-+ Mki3 = Mki2 + lda;
-+ Mki4 = Mki3 + lda;
-+ Mki5 = Mki4 + lda;
-+ Mki6 = Mki5 + lda;
-+ Mki7 = Mki6 + lda;
-+
-+ v00 = x0[firstcol]; v01 = x1[firstcol++];
-+ v10 = x0[firstcol]; v11 = x1[firstcol++];
-+ v20 = x0[firstcol]; v21 = x1[firstcol++];
-+ v30 = x0[firstcol]; v31 = x1[firstcol++];
-+ v40 = x0[firstcol]; v41 = x1[firstcol++];
-+ v50 = x0[firstcol]; v51 = x1[firstcol++];
-+ v60 = x0[firstcol]; v61 = x1[firstcol++];
-+ v70 = x0[firstcol]; v71 = x1[firstcol++];
-+
-+ for (k = 0; k < m; k++) {
-+ f0 = y0[k];
-+ f1 = y1[k];
-+ t0 = Mki0[k]; cc_mult(&temp, &v00, &t0);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v01,&t0);c_add(&f1,&f1,&temp);
-+ t1 = Mki1[k]; cc_mult(&temp,&v10,&t1);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v11,&t1);c_add(&f1,&f1,&temp);
-+ t2 = Mki2[k]; cc_mult(&temp,&v20,&t2);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v21,&t2);c_add(&f1,&f1,&temp);
-+ t3 = Mki3[k]; cc_mult(&temp,&v30,&t3);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v31,&t3);c_add(&f1,&f1,&temp);
-+ t4 = Mki4[k]; cc_mult(&temp,&v40,&t4);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v41,&t4);c_add(&f1,&f1,&temp);
-+ t5 = Mki5[k]; cc_mult(&temp,&v50,&t5);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v51,&t5);c_add(&f1,&f1,&temp);
-+ t6 = Mki6[k]; cc_mult(&temp,&v60,&t6);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v61,&t6);c_add(&f1,&f1,&temp);
-+ t7 = Mki7[k]; cc_mult(&temp,&v70,&t7);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v71,&t7);c_add(&f1,&f1,&temp);
-+ y0[k] = f0;
-+ y1[k] = f1;
-+ }
-+
-+ M0 += 8 * lda;
-+ }
-+
-+ while ( firstcol < n - 3 ) { /* Do 4 columns */
-+ Mki0 = M0;
-+ Mki1 = Mki0 + lda;
-+ Mki2 = Mki1 + lda;
-+ Mki3 = Mki2 + lda;
-+
-+ v00 = x0[firstcol]; v01 = x1[firstcol++];
-+ v10 = x0[firstcol]; v11 = x1[firstcol++];
-+ v20 = x0[firstcol]; v21 = x1[firstcol++];
-+ v30 = x0[firstcol]; v31 = x1[firstcol++];
-+
-+ for (k = 0; k < m; k++) {
-+ f0 = y0[k];
-+ f1 = y1[k];
-+ t0 = Mki0[k]; cc_mult(&temp,&v00,&t0);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v01,&t0);c_add(&f1,&f1,&temp);
-+ t1 = Mki1[k]; cc_mult(&temp,&v10,&t1);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v11,&t1);c_add(&f1,&f1,&temp);
-+ t2 = Mki2[k]; cc_mult(&temp,&v20,&t2);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v21,&t2);c_add(&f1,&f1,&temp);
-+ t3 = Mki3[k]; cc_mult(&temp,&v30,&t3);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v31,&t3);c_add(&f1,&f1,&temp);
-+ y0[k] = f0;
-+ y1[k] = f1;
-+ }
-+
-+ M0 += 4 * lda;
-+
-+ }
-+
-+ while ( firstcol < n ) { /* Do 1 column */
-+ Mki0 = M0;
-+ v00 = x0[firstcol]; v01 = x1[firstcol++];
-+
-+ for (k = 0; k < m; k++) {
-+ f0 = y0[k];
-+ f1 = y1[k];
-+ t0 = Mki0[k];
-+ cc_mult(&temp,&v00,&t0);c_add(&f0,&f0,&temp);
-+ cc_mult(&temp,&v01,&t0);c_add(&f1,&f1,&temp);
-+ y0[k] = f0;
-+ y1[k] = f1;
-+ }
-+
-+ M0 += lda;
-+ }
-+
-+}
-+
-+
-diff -Nur SRC.orig/cmyblas2.c.orig SRC/cmyblas2.c.orig
---- SRC.orig/cmyblas2.c.orig 1969-12-31 16:00:00.000000000 -0800
-+++ SRC/cmyblas2.c.orig 2013-07-15 11:49:05.149137948 -0700
-@@ -0,0 +1,185 @@
-+
-+/*
-+ * -- SuperLU routine (version 2.0) --
-+ * Lawrence Berkeley National Lab, Univ. of California Berkeley,
-+ * and Xerox Palo Alto Research Center.
-+ * September 10, 2007
-+ *
-+ */
-+/*
-+ * File name: cmyblas2.c
-+ * Purpose:
-+ * Level 2 BLAS operations: solves and matvec, written in C.
-+ * Note:
-+ * This is only used when the system lacks an efficient BLAS library.
-+ */
-+#include "slu_scomplex.h"
-+
-+
-+/*
-+ * Solves a dense UNIT lower triangular system. The unit lower
-+ * triangular matrix is stored in a 2D array M(1:nrow,1:ncol).
-+ * The solution will be returned in the rhs vector.
-+ */
-+void clsolve ( int ldm, int ncol, complex *M, complex *rhs )
-+{
-+ int k;
-+ complex x0, x1, x2, x3, temp;
-+ complex *M0;
-+ complex *Mki0, *Mki1, *Mki2, *Mki3;
-+ register int firstcol = 0;
-+
-+ M0 = &M[0];
-+
-+
-+ while ( firstcol < ncol - 3 ) { /* Do 4 columns */
-+ Mki0 = M0 + 1;
-+ Mki1 = Mki0 + ldm + 1;
-+ Mki2 = Mki1 + ldm + 1;
-+ Mki3 = Mki2 + ldm + 1;
-+
-+ x0 = rhs[firstcol];
-+ cc_mult(&temp, &x0, Mki0); Mki0++;
-+ c_sub(&x1, &rhs[firstcol+1], &temp);
-+ cc_mult(&temp, &x0, Mki0); Mki0++;
-+ c_sub(&x2, &rhs[firstcol+2], &temp);
-+ cc_mult(&temp, &x1, Mki1); Mki1++;
-+ c_sub(&x2, &x2, &temp);
-+ cc_mult(&temp, &x0, Mki0); Mki0++;
-+ c_sub(&x3, &rhs[firstcol+3], &temp);
-+ cc_mult(&temp, &x1, Mki1); Mki1++;
-+ c_sub(&x3, &x3, &temp);
-+ cc_mult(&temp, &x2, Mki2); Mki2++;
-+ c_sub(&x3, &x3, &temp);
-+
-+ rhs[++firstcol] = x1;
-+ rhs[++firstcol] = x2;
-+ rhs[++firstcol] = x3;
-+ ++firstcol;
-+
-+ for (k = firstcol; k < ncol; k++) {
-+ cc_mult(&temp, &x0, Mki0); Mki0++;
-+ c_sub(&rhs[k], &rhs[k], &temp);
-+ cc_mult(&temp, &x1, Mki1); Mki1++;
-+ c_sub(&rhs[k], &rhs[k], &temp);
-+ cc_mult(&temp, &x2, Mki2); Mki2++;
-+ c_sub(&rhs[k], &rhs[k], &temp);
-+ cc_mult(&temp, &x3, Mki3); Mki3++;
-+ c_sub(&rhs[k], &rhs[k], &temp);
-+ }
-+
-+ M0 += 4 * ldm + 4;
-+ }
-+
-+ if ( firstcol < ncol - 1 ) { /* Do 2 columns */
-+ Mki0 = M0 + 1;
-+ Mki1 = Mki0 + ldm + 1;
-+
-+ x0 = rhs[firstcol];
-+ cc_mult(&temp, &x0, Mki0); Mki0++;
-+ c_sub(&x1, &rhs[firstcol+1], &temp);
-+
-+ rhs[++firstcol] = x1;
-+ ++firstcol;
-+
-+ for (k = firstcol; k < ncol; k++) {
-+ cc_mult(&temp, &x0, Mki0); Mki0++;
-+ c_sub(&rhs[k], &rhs[k], &temp);
-+ cc_mult(&temp, &x1, Mki1); Mki1++;
-+ c_sub(&rhs[k], &rhs[k], &temp);
-+ }
-+ }
-+
-+}
-+
-+/*
-+ * Solves a dense upper triangular system. The upper triangular matrix is
-+ * stored in a 2-dim array M(1:ldm,1:ncol). The solution will be returned
-+ * in the rhs vector.
-+ */
-+void
-+cusolve (
-+int ldm, /* in */
-+int ncol, /* in */
-+complex *M, /* in */
-+complex *rhs /* modified */
-+)
-+{
-+ complex xj, temp;
-+ int jcol, j, irow;
-+
-+ jcol = ncol - 1;
-+
-+ for (j = 0; j < ncol; j++) {
-+
-+ c_div(&xj, &rhs[jcol], &M[jcol + jcol*ldm]); /* M(jcol, jcol) */
-+ rhs[jcol] = xj;
-+
-+ for (irow = 0; irow < jcol; irow++) {
-+ cc_mult(&temp, &xj, &M[irow+jcol*ldm]); /* M(irow, jcol) */
-+ c_sub(&rhs[irow], &rhs[irow], &temp);
-+ }
-+
-+ jcol--;
-+
-+ }
-+}
-+
-+
-+/*
-+ * Performs a dense matrix-vector multiply: Mxvec = Mxvec + M * vec.
-+ * The input matrix is M(1:nrow,1:ncol); The product is returned in Mxvec[].
-+ */
-+void cmatvec (
-+int ldm, /* in -- leading dimension of M */
-+int nrow, /* in */
-+int ncol, /* in */
-+complex *M, /* in */
-+complex *vec, /* in */
-+complex *Mxvec /* in/out */
-+)
-+{
-+ complex vi0, vi1, vi2, vi3;
-+ complex *M0, temp;
-+ complex *Mki0, *Mki1, *Mki2, *Mki3;
-+ register int firstcol = 0;
-+ int k;
-+
-+ M0 = &M[0];
-+
-+ while ( firstcol < ncol - 3 ) { /* Do 4 columns */
-+ Mki0 = M0;
-+ Mki1 = Mki0 + ldm;
-+ Mki2 = Mki1 + ldm;
-+ Mki3 = Mki2 + ldm;
-+
-+ vi0 = vec[firstcol++];
-+ vi1 = vec[firstcol++];
-+ vi2 = vec[firstcol++];
-+ vi3 = vec[firstcol++];
-+ for (k = 0; k < nrow; k++) {
-+ cc_mult(&temp, &vi0, Mki0); Mki0++;
-+ c_add(&Mxvec[k], &Mxvec[k], &temp);
-+ cc_mult(&temp, &vi1, Mki1); Mki1++;
-+ c_add(&Mxvec[k], &Mxvec[k], &temp);
-+ cc_mult(&temp, &vi2, Mki2); Mki2++;
-+ c_add(&Mxvec[k], &Mxvec[k], &temp);
-+ cc_mult(&temp, &vi3, Mki3); Mki3++;
-+ c_add(&Mxvec[k], &Mxvec[k], &temp);
-+ }
-+
-+ M0 += 4 * ldm;
-+ }
-+
-+ while ( firstcol < ncol ) { /* Do 1 column */
-+ Mki0 = M0;
-+ vi0 = vec[firstcol++];
-+ for (k = 0; k < nrow; k++) {
-+ cc_mult(&temp, &vi0, Mki0); Mki0++;
-+ c_add(&Mxvec[k], &Mxvec[k], &temp);
-+ }
-+ M0 += ldm;
-+ }
-+
-+}
-+
-diff -Nur SRC.orig/Makefile SRC/Makefile
---- SRC.orig/Makefile 2013-07-15 11:47:52.511735412 -0700
-+++ SRC/Makefile 2013-07-15 11:53:15.393528085 -0700
-@@ -31,7 +31,7 @@
- #
- #######################################################################
-
--ALLAUX = superlu_timer.o dclock.o sp_ienv.o lsame.o xerbla.o \
-+ALLAUX = superlu_timer.o sp_ienv.o lsame.o xerbla.o \
- util.o pmemory.o qrnzcnt.o await.o \
- get_perm_c.o mmd.o colamd.o sp_coletree.o \
- pxgstrf_scheduler.o sp_colorder.o \
-diff -Nur SRC.orig/smatgen.c SRC/smatgen.c
---- SRC.orig/smatgen.c 2013-07-15 11:47:52.512735420 -0700
-+++ SRC/smatgen.c 2013-07-15 11:49:05.149137948 -0700
-@@ -93,76 +93,3 @@
- xa[n] = lasta;
- }
-
--double dlaran_(int *iseed)
--{
--/* -- LAPACK auxiliary routine (version 2.0) --
-- Univ. of Tennessee, Univ. of California Berkeley, NAG Ltd.,
-- Courant Institute, Argonne National Lab, and Rice University
-- February 29, 1992
--
-- Purpose
-- =======
--
-- DLARAN returns a random real number from a uniform (0,1)
-- distribution.
--
-- Arguments
-- =========
--
-- ISEED (input/output) INT array, dimension (4)
-- On entry, the seed of the random number generator; the array
--
-- elements must be between 0 and 4095, and ISEED(4) must be
-- odd.
-- On exit, the seed is updated.
--
-- Further Details
-- ===============
--
-- This routine uses a multiplicative congruential method with modulus
-- 2**48 and multiplier 33952834046453 (see G.S.Fishman,
-- 'Multiplicative congruential random number generators with modulus
-- 2**b: an exhaustive analysis for b = 32 and a partial analysis for
-- b = 48', Math. Comp. 189, pp 331-344, 1990).
--
-- 48-bit integers are stored in 4 integer array elements with 12 bits
-- per element. Hence the routine is portable across machines with
-- integers of 32 bits or more.
--
-- =====================================================================
--*/
--
-- /* Local variables */
-- int it1, it2, it3, it4;
--
-- --iseed;
--
-- /* multiply the seed by the multiplier modulo 2**48 */
-- it4 = iseed[4] * 2549;
-- it3 = it4 / 4096;
-- it4 -= it3 << 12;
-- it3 = it3 + iseed[3] * 2549 + iseed[4] * 2508;
-- it2 = it3 / 4096;
-- it3 -= it2 << 12;
-- it2 = it2 + iseed[2] * 2549 + iseed[3] * 2508 + iseed[4] * 322;
-- it1 = it2 / 4096;
-- it2 -= it1 << 12;
-- it1 = it1 + iseed[1] * 2549 + iseed[2] * 2508 + iseed[3] * 322 + iseed[4]
-- * 494;
-- it1 %= 4096;
--
-- /* return updated seed */
--
-- iseed[1] = it1;
-- iseed[2] = it2;
-- iseed[3] = it3;
-- iseed[4] = it4;
--
-- /* convert 48-bit integer to a real number in the interval (0,1) */
--
-- return ((double) it1 +
-- ((double) it2 + ((double) it3 + (double) it4 * 2.44140625e-4) *
-- 2.44140625e-4) * 2.44140625e-4) * 2.44140625e-4;
--
--} /* dlaran_ */
--
-diff -Nur SRC.orig/xerbla.c SRC/xerbla.c
---- SRC.orig/xerbla.c 2013-07-15 11:47:52.513735427 -0700
-+++ SRC/xerbla.c 2013-07-15 11:49:05.150137959 -0700
-@@ -1,3 +1,4 @@
-+#include <stdio.h>
- /* Subroutine */ int xerbla_(char *srname, int *info)
- {
- /* -- LAPACK auxiliary routine (version 2.0) --
-diff -Nur SRC.orig/zmatgen.c SRC/zmatgen.c
---- SRC.orig/zmatgen.c 2013-07-15 11:47:52.513735427 -0700
-+++ SRC/zmatgen.c 2013-07-15 11:49:05.150137959 -0700
-@@ -93,76 +93,3 @@
- xa[n] = lasta;
- }
-
--double dlaran_(int *iseed)
--{
--/* -- LAPACK auxiliary routine (version 2.0) --
-- Univ. of Tennessee, Univ. of California Berkeley, NAG Ltd.,
-- Courant Institute, Argonne National Lab, and Rice University
-- February 29, 1992
--
-- Purpose
-- =======
--
-- DLARAN returns a random real number from a uniform (0,1)
-- distribution.
--
-- Arguments
-- =========
--
-- ISEED (input/output) INT array, dimension (4)
-- On entry, the seed of the random number generator; the array
--
-- elements must be between 0 and 4095, and ISEED(4) must be
-- odd.
-- On exit, the seed is updated.
--
-- Further Details
-- ===============
--
-- This routine uses a multiplicative congruential method with modulus
-- 2**48 and multiplier 33952834046453 (see G.S.Fishman,
-- 'Multiplicative congruential random number generators with modulus
-- 2**b: an exhaustive analysis for b = 32 and a partial analysis for
-- b = 48', Math. Comp. 189, pp 331-344, 1990).
--
-- 48-bit integers are stored in 4 integer array elements with 12 bits
-- per element. Hence the routine is portable across machines with
-- integers of 32 bits or more.
--
-- =====================================================================
--*/
--
-- /* Local variables */
-- int it1, it2, it3, it4;
--
-- --iseed;
--
-- /* multiply the seed by the multiplier modulo 2**48 */
-- it4 = iseed[4] * 2549;
-- it3 = it4 / 4096;
-- it4 -= it3 << 12;
-- it3 = it3 + iseed[3] * 2549 + iseed[4] * 2508;
-- it2 = it3 / 4096;
-- it3 -= it2 << 12;
-- it2 = it2 + iseed[2] * 2549 + iseed[3] * 2508 + iseed[4] * 322;
-- it1 = it2 / 4096;
-- it2 -= it1 << 12;
-- it1 = it1 + iseed[1] * 2549 + iseed[2] * 2508 + iseed[3] * 322 + iseed[4]
-- * 494;
-- it1 %= 4096;
--
-- /* return updated seed */
--
-- iseed[1] = it1;
-- iseed[2] = it2;
-- iseed[3] = it3;
-- iseed[4] = it4;
--
-- /* convert 48-bit integer to a real number in the interval (0,1) */
--
-- return ((double) it1 +
-- ((double) it2 + ((double) it3 + (double) it4 * 2.44140625e-4) *
-- 2.44140625e-4) * 2.44140625e-4) * 2.44140625e-4;
--
--} /* dlaran_ */
--
-diff -Nur SRC.orig/zmyblas2.c SRC/zmyblas2.c
---- SRC.orig/zmyblas2.c 2013-07-15 11:47:52.511735412 -0700
-+++ SRC/zmyblas2.c 2013-07-15 11:49:05.150137959 -0700
-@@ -183,3 +183,127 @@
-
- }
-
-+/*
-+ * Performs dense matrix-vector multiply with 2 vectors:
-+ * y0 = y0 + A * x0
-+ * y1 = y1 + A * x1
-+ */
-+void zmatvec2 (
-+ int lda, /* leading dimension of A */
-+ int m,
-+ int n,
-+ doublecomplex *A, /* in - size m-by-n */
-+ doublecomplex *x0, /* in - size n-by-1 */
-+ doublecomplex *x1, /* in - size n-by-1 */
-+ doublecomplex *y0, /* out - size n-by-1 */
-+ doublecomplex *y1 /* out - size n-by-1 */
-+ )
-+
-+{
-+ doublecomplex v00, v10, v20, v30, v40, v50, v60, v70,
-+ v01, v11, v21, v31, v41, v51, v61, v71;
-+ doublecomplex t0, t1, t2, t3, t4, t5, t6, t7;
-+ doublecomplex f0, f1;
-+ doublecomplex *Mki0, *Mki1, *Mki2, *Mki3, *Mki4, *Mki5, *Mki6, *Mki7;
-+ register int firstcol = 0;
-+ doublecomplex *M0, temp;
-+ int k;
-+
-+ M0 = &A[0];
-+
-+ while ( firstcol < n - 7 ) { /* Do 8 columns */
-+
-+ Mki0 = M0;
-+ Mki1 = Mki0 + lda;
-+ Mki2 = Mki1 + lda;
-+ Mki3 = Mki2 + lda;
-+ Mki4 = Mki3 + lda;
-+ Mki5 = Mki4 + lda;
-+ Mki6 = Mki5 + lda;
-+ Mki7 = Mki6 + lda;
-+
-+ v00 = x0[firstcol]; v01 = x1[firstcol++];
-+ v10 = x0[firstcol]; v11 = x1[firstcol++];
-+ v20 = x0[firstcol]; v21 = x1[firstcol++];
-+ v30 = x0[firstcol]; v31 = x1[firstcol++];
-+ v40 = x0[firstcol]; v41 = x1[firstcol++];
-+ v50 = x0[firstcol]; v51 = x1[firstcol++];
-+ v60 = x0[firstcol]; v61 = x1[firstcol++];
-+ v70 = x0[firstcol]; v71 = x1[firstcol++];
-+
-+ for (k = 0; k < m; k++) {
-+ f0 = y0[k];
-+ f1 = y1[k];
-+ t0 = Mki0[k]; zz_mult(&temp,&v00,&t0);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v01,&t0);z_add(&f1,&f1,&temp);
-+ t1 = Mki1[k]; zz_mult(&temp,&v10,&t1);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v11,&t1);z_add(&f1,&f1,&temp);
-+ t2 = Mki2[k]; zz_mult(&temp,&v20,&t2);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v21,&t2);z_add(&f1,&f1,&temp);
-+ t3 = Mki3[k]; zz_mult(&temp,&v30,&t3);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v31,&t3);z_add(&f1,&f1,&temp);
-+ t4 = Mki4[k]; zz_mult(&temp,&v40,&t4);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v41,&t4);z_add(&f1,&f1,&temp);
-+ t5 = Mki5[k]; zz_mult(&temp,&v50,&t5);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v51,&t5);z_add(&f1,&f1,&temp);
-+ t6 = Mki6[k]; zz_mult(&temp,&v60,&t6);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v61,&t6);z_add(&f1,&f1,&temp);
-+ t7 = Mki7[k]; zz_mult(&temp,&v70,&t7);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v71,&t7);z_add(&f1,&f1,&temp);
-+ y0[k] = f0;
-+ y1[k] = f1;
-+ }
-+
-+ M0 += 8 * lda;
-+ }
-+
-+ while ( firstcol < n - 3 ) { /* Do 4 columns */
-+ Mki0 = M0;
-+ Mki1 = Mki0 + lda;
-+ Mki2 = Mki1 + lda;
-+ Mki3 = Mki2 + lda;
-+
-+ v00 = x0[firstcol]; v01 = x1[firstcol++];
-+ v10 = x0[firstcol]; v11 = x1[firstcol++];
-+ v20 = x0[firstcol]; v21 = x1[firstcol++];
-+ v30 = x0[firstcol]; v31 = x1[firstcol++];
-+
-+ for (k = 0; k < m; k++) {
-+ f0 = y0[k];
-+ f1 = y1[k];
-+ t0 = Mki0[k]; zz_mult(&temp,&v00,&t0);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v01,&t0);z_add(&f1,&f1,&temp);
-+ t1 = Mki1[k]; zz_mult(&temp,&v10,&t1);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v11,&t1);z_add(&f1,&f1,&temp);
-+ t2 = Mki2[k]; zz_mult(&temp,&v20,&t2);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v21,&t2);z_add(&f1,&f1,&temp);
-+ t3 = Mki3[k]; zz_mult(&temp,&v30,&t3);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v31,&t3);z_add(&f1,&f1,&temp);
-+ y0[k] = f0;
-+ y1[k] = f1;
-+ }
-+
-+ M0 += 4 * lda;
-+
-+ }
-+
-+ while ( firstcol < n ) { /* Do 1 column */
-+ Mki0 = M0;
-+ v00 = x0[firstcol]; v01 = x1[firstcol++];
-+
-+ for (k = 0; k < m; k++) {
-+ f0 = y0[k];
-+ f1 = y1[k];
-+ t0 = Mki0[k];
-+ zz_mult(&temp,&v00,&t0);z_add(&f0,&f0,&temp);
-+ zz_mult(&temp,&v01,&t0);z_add(&f1,&f1,&temp);
-+ y0[k] = f0;
-+ y1[k] = f1;
-+ }
-+
-+ M0 += lda;
-+ }
-+
-+}
-+
-+
-diff -Nur SRC.orig/zmyblas2.c.orig SRC/zmyblas2.c.orig
---- SRC.orig/zmyblas2.c.orig 1969-12-31 16:00:00.000000000 -0800
-+++ SRC/zmyblas2.c.orig 2013-07-15 11:49:05.150137959 -0700
-@@ -0,0 +1,185 @@
-+
-+/*
-+ * -- SuperLU routine (version 2.0) --
-+ * Lawrence Berkeley National Lab, Univ. of California Berkeley,
-+ * and Xerox Palo Alto Research Center.
-+ * September 10, 2007
-+ *
-+ */
-+/*
-+ * File name: zmyblas2.c
-+ * Purpose:
-+ * Level 2 BLAS operations: solves and matvec, written in C.
-+ * Note:
-+ * This is only used when the system lacks an efficient BLAS library.
-+ */
-+#include "slu_dcomplex.h"
-+
-+
-+/*
-+ * Solves a dense UNIT lower triangular system. The unit lower
-+ * triangular matrix is stored in a 2D array M(1:nrow,1:ncol).
-+ * The solution will be returned in the rhs vector.
-+ */
-+void zlsolve ( int ldm, int ncol, doublecomplex *M, doublecomplex *rhs )
-+{
-+ int k;
-+ doublecomplex x0, x1, x2, x3, temp;
-+ doublecomplex *M0;
-+ doublecomplex *Mki0, *Mki1, *Mki2, *Mki3;
-+ register int firstcol = 0;
-+
-+ M0 = &M[0];
-+
-+
-+ while ( firstcol < ncol - 3 ) { /* Do 4 columns */
-+ Mki0 = M0 + 1;
-+ Mki1 = Mki0 + ldm + 1;
-+ Mki2 = Mki1 + ldm + 1;
-+ Mki3 = Mki2 + ldm + 1;
-+
-+ x0 = rhs[firstcol];
-+ zz_mult(&temp, &x0, Mki0); Mki0++;
-+ z_sub(&x1, &rhs[firstcol+1], &temp);
-+ zz_mult(&temp, &x0, Mki0); Mki0++;
-+ z_sub(&x2, &rhs[firstcol+2], &temp);
-+ zz_mult(&temp, &x1, Mki1); Mki1++;
-+ z_sub(&x2, &x2, &temp);
-+ zz_mult(&temp, &x0, Mki0); Mki0++;
-+ z_sub(&x3, &rhs[firstcol+3], &temp);
-+ zz_mult(&temp, &x1, Mki1); Mki1++;
-+ z_sub(&x3, &x3, &temp);
-+ zz_mult(&temp, &x2, Mki2); Mki2++;
-+ z_sub(&x3, &x3, &temp);
-+
-+ rhs[++firstcol] = x1;
-+ rhs[++firstcol] = x2;
-+ rhs[++firstcol] = x3;
-+ ++firstcol;
-+
-+ for (k = firstcol; k < ncol; k++) {
-+ zz_mult(&temp, &x0, Mki0); Mki0++;
-+ z_sub(&rhs[k], &rhs[k], &temp);
-+ zz_mult(&temp, &x1, Mki1); Mki1++;
-+ z_sub(&rhs[k], &rhs[k], &temp);
-+ zz_mult(&temp, &x2, Mki2); Mki2++;
-+ z_sub(&rhs[k], &rhs[k], &temp);
-+ zz_mult(&temp, &x3, Mki3); Mki3++;
-+ z_sub(&rhs[k], &rhs[k], &temp);
-+ }
-+
-+ M0 += 4 * ldm + 4;
-+ }
-+
-+ if ( firstcol < ncol - 1 ) { /* Do 2 columns */
-+ Mki0 = M0 + 1;
-+ Mki1 = Mki0 + ldm + 1;
-+
-+ x0 = rhs[firstcol];
-+ zz_mult(&temp, &x0, Mki0); Mki0++;
-+ z_sub(&x1, &rhs[firstcol+1], &temp);
-+
-+ rhs[++firstcol] = x1;
-+ ++firstcol;
-+
-+ for (k = firstcol; k < ncol; k++) {
-+ zz_mult(&temp, &x0, Mki0); Mki0++;
-+ z_sub(&rhs[k], &rhs[k], &temp);
-+ zz_mult(&temp, &x1, Mki1); Mki1++;
-+ z_sub(&rhs[k], &rhs[k], &temp);
-+ }
-+ }
-+
-+}
-+
-+/*
-+ * Solves a dense upper triangular system. The upper triangular matrix is
-+ * stored in a 2-dim array M(1:ldm,1:ncol). The solution will be returned
-+ * in the rhs vector.
-+ */
-+void
-+zusolve (
-+int ldm, /* in */
-+int ncol, /* in */
-+doublecomplex *M, /* in */
-+doublecomplex *rhs /* modified */
-+)
-+{
-+ doublecomplex xj, temp;
-+ int jcol, j, irow;
-+
-+ jcol = ncol - 1;
-+
-+ for (j = 0; j < ncol; j++) {
-+
-+ z_div(&xj, &rhs[jcol], &M[jcol + jcol*ldm]); /* M(jcol, jcol) */
-+ rhs[jcol] = xj;
-+
-+ for (irow = 0; irow < jcol; irow++) {
-+ zz_mult(&temp, &xj, &M[irow+jcol*ldm]); /* M(irow, jcol) */
-+ z_sub(&rhs[irow], &rhs[irow], &temp);
-+ }
-+
-+ jcol--;
-+
-+ }
-+}
-+
-+
-+/*
-+ * Performs a dense matrix-vector multiply: Mxvec = Mxvec + M * vec.
-+ * The input matrix is M(1:nrow,1:ncol); The product is returned in Mxvec[].
-+ */
-+void zmatvec (
-+int ldm, /* in -- leading dimension of M */
-+int nrow, /* in */
-+int ncol, /* in */
-+doublecomplex *M, /* in */
-+doublecomplex *vec, /* in */
-+doublecomplex *Mxvec /* in/out */
-+)
-+{
-+ doublecomplex vi0, vi1, vi2, vi3;
-+ doublecomplex *M0, temp;
-+ doublecomplex *Mki0, *Mki1, *Mki2, *Mki3;
-+ register int firstcol = 0;
-+ int k;
-+
-+ M0 = &M[0];
-+
-+ while ( firstcol < ncol - 3 ) { /* Do 4 columns */
-+ Mki0 = M0;
-+ Mki1 = Mki0 + ldm;
-+ Mki2 = Mki1 + ldm;
-+ Mki3 = Mki2 + ldm;
-+
-+ vi0 = vec[firstcol++];
-+ vi1 = vec[firstcol++];
-+ vi2 = vec[firstcol++];
-+ vi3 = vec[firstcol++];
-+ for (k = 0; k < nrow; k++) {
-+ zz_mult(&temp, &vi0, Mki0); Mki0++;
-+ z_add(&Mxvec[k], &Mxvec[k], &temp);
-+ zz_mult(&temp, &vi1, Mki1); Mki1++;
-+ z_add(&Mxvec[k], &Mxvec[k], &temp);
-+ zz_mult(&temp, &vi2, Mki2); Mki2++;
-+ z_add(&Mxvec[k], &Mxvec[k], &temp);
-+ zz_mult(&temp, &vi3, Mki3); Mki3++;
-+ z_add(&Mxvec[k], &Mxvec[k], &temp);
-+ }
-+
-+ M0 += 4 * ldm;
-+ }
-+
-+ while ( firstcol < ncol ) { /* Do 1 column */
-+ Mki0 = M0;
-+ vi0 = vec[firstcol++];
-+ for (k = 0; k < nrow; k++) {
-+ zz_mult(&temp, &vi0, Mki0); Mki0++;
-+ z_add(&Mxvec[k], &Mxvec[k], &temp);
-+ }
-+ M0 += ldm;
-+ }
-+
-+}
-+
diff --git a/sci-libs/superlu_mt/files/superlu_mt-2.1-missing-includes.patch b/sci-libs/superlu_mt/files/superlu_mt-2.1-missing-includes.patch
deleted file mode 100644
index afeca8f..0000000
--- a/sci-libs/superlu_mt/files/superlu_mt-2.1-missing-includes.patch
+++ /dev/null
@@ -1,44 +0,0 @@
-diff -Nur TESTING.orig/MATGEN/clatb4.c TESTING/MATGEN/clatb4.c
---- TESTING.orig/MATGEN/clatb4.c 2013-07-15 11:48:34.285967038 -0700
-+++ TESTING/MATGEN/clatb4.c 2013-07-15 11:49:05.150137959 -0700
-@@ -3,6 +3,7 @@
- -lf2c -lm (in that order)
- */
-
-+#include <string.h>
- #include "f2c.h"
-
- /* Table of constant values */
-diff -Nur TESTING.orig/MATGEN/dlatb4.c TESTING/MATGEN/dlatb4.c
---- TESTING.orig/MATGEN/dlatb4.c 2013-07-15 11:48:34.288966998 -0700
-+++ TESTING/MATGEN/dlatb4.c 2013-07-15 11:49:05.150137959 -0700
-@@ -3,6 +3,7 @@
- -lf2c -lm (in that order)
- */
-
-+#include <string.h>
- #include "f2c.h"
-
- /* Table of constant values */
-diff -Nur TESTING.orig/MATGEN/slatb4.c TESTING/MATGEN/slatb4.c
---- TESTING.orig/MATGEN/slatb4.c 2013-07-15 11:48:34.288966998 -0700
-+++ TESTING/MATGEN/slatb4.c 2013-07-15 11:49:05.150137959 -0700
-@@ -3,6 +3,7 @@
- -lf2c -lm (in that order)
- */
-
-+#include <string.h>
- #include "f2c.h"
-
- /* Table of constant values */
-diff -Nur TESTING.orig/MATGEN/zlatb4.c TESTING/MATGEN/zlatb4.c
---- TESTING.orig/MATGEN/zlatb4.c 2013-07-15 11:48:34.288966998 -0700
-+++ TESTING/MATGEN/zlatb4.c 2013-07-15 11:49:05.150137959 -0700
-@@ -3,6 +3,7 @@
- -lf2c -lm (in that order)
- */
-
-+#include <string.h>
- #include "f2c.h"
-
- /* Table of constant values */
diff --git a/sci-libs/superlu_mt/metadata.xml b/sci-libs/superlu_mt/metadata.xml
deleted file mode 100644
index 2b1e34d..0000000
--- a/sci-libs/superlu_mt/metadata.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
-</maintainer>
-<longdescription lang="en">
- SuperLU is a general purpose library for the direct solution of
- large, sparse, nonsymmetric systems of linear equations on high
- performance machines. The library is written in C and is callable
- from either C or Fortran. The library routines will perform an LU
- decomposition with partial pivoting and triangular system solves
- through forward and back substitution. The LU factorization routines
- can handle non-square matrices but the triangular solves are
- performed only for square matrices. The matrix columns may be
- preordered (before factorization) either through library or user
- supplied routines. This preordering for sparsity is completely
- separate from the factorization. Working precision iterative
- refinement subroutines are provided for improved backward
- stability. Routines are also provided to equilibrate the system,
- estimate the condition number, calculate the relative backward
- error, and estimate error bounds for the refined solutions.
- This is the multi-threaded version (POSIX threads or OpenMP).
-</longdescription>
-</pkgmetadata>
diff --git a/sci-libs/superlu_mt/superlu_mt-2.1.ebuild b/sci-libs/superlu_mt/superlu_mt-2.1.ebuild
deleted file mode 100644
index 90ed576..0000000
--- a/sci-libs/superlu_mt/superlu_mt-2.1.ebuild
+++ /dev/null
@@ -1,110 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit eutils fortran-2 toolchain-funcs
-
-MYPN=SuperLU_MT
-
-DESCRIPTION="Multithreaded sparse LU factorization library"
-HOMEPAGE="http://crd.lbl.gov/~xiaoye/SuperLU/"
-SRC_URI="${HOMEPAGE}/${PN}_${PV}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc openmp threads examples static-libs test"
-
-RDEPEND="
- virtual/blas"
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- test? ( app-shells/tcsh )"
-
-S="${WORKDIR}/${MYPN}_${PV}"
-
-pkg_setup() {
- if use threads; then
- export CTHREADS="-D__PTHREAD" LDTHREADS="-pthread"
- elif use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- export CTHREADS="-D__OPENMP"
- [[ $(tc-getCC) == *gcc ]] && LDTHREADS="-fopenmp"
- else
- ewarn "Neither threads or openmp selected. Forcing threads"
- export CTHREADS="-D__PTHREAD" LDTHREADS="-pthread"
- fi
- fortran-2_pkg_setup
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-duplicate-symbols.patch \
- "${FILESDIR}"/${P}-missing-includes.patch
-}
-
-src_configure() {
- sed -i \
- -e 's/^\(PLAT\s*=\).*/\1/' \
- -e "s:^\(CC\s*=\).*:\1 $(tc-getCC):" \
- -e "/CFLAGS/s:-O3:${CFLAGS} \$(PIC):" \
- -e "s:^\(PREDEFS\s*=\).*:\1 ${CPPFLAGS} -DUSE_VENDOR_BLAS \$(CTHREADS)$:" \
- -e "s:^\(NOOPTS\s*=.*\):\1 \$(PIC):" \
- -e "s:^\(FORTRAN\s*=\).*:\1 $(tc-getFC):" \
- -e "s:^\(FFLAGS\s*=\).*:\1 ${FFLAGS} \$(PIC):" \
- -e "s:^\(ARCH\s*=\).*:\1 $(tc-getAR):" \
- -e "s:^\(RANLIB\s*=\).*:\1 $(tc-getRANLIB):" \
- -e "s:^\(LOADER\s*=\).*:\1 $(tc-getCC):" \
- -e "s:^\(LOADOPTS\s*=\).*:\1 ${LDFLAGS} \$(LDTHREADS):" \
- -e "/MPLIB/d" \
- -e "s:^\(BLASLIB\s*=\).*:\1 $($(tc-getPKG_CONFIG) --libs blas):" \
- make.inc || die
- SONAME=libsuperlu_mt.so.0
- sed -i \
- -e 's|../make.inc|make.inc|' \
- -e "s|../SRC|${EPREFIX}/usr/include/${PN}|" \
- -e '/:.*$(SUPERLULIB)/s|../lib/$(SUPERLULIB)||g' \
- -e 's|../lib/$(SUPERLULIB)|-lsuperlu_mt|g' \
- EXAMPLE/Makefile || die
-}
-
-src_compile() {
- emake superlulib \
- PIC="-fPIC" ARCH="echo" ARCHFLAGS="" RANLIB="echo"
- $(tc-getCC) ${LDFLAGS} ${LDTHREADS} -shared -Wl,-soname=${SONAME} SRC/*.o \
- $($(tc-getPKG_CONFIG) --libs blas) -lm -o lib/${SONAME} || die
- ln -s ${SONAME} lib/libsuperlu_mt.so || die
-
- use static-libs && rm -f SRC/*.o && emake superlulib \
- PIC="" ARCH="$(tc-getAR)" ARCHFLAGS="cr" RANLIB="$(tc-getRANLIB)"
-}
-
-src_test() {
- emake -j1 tmglib
- LD_LIBRARY_PATH="${S}/lib:${LD_LIBRARY_PATH}" \
- emake SUPERLULIB="${SONAME}" testing
-}
-
-src_install() {
- dolib.so lib/*so*
- use static-libs && dolib.a lib/*.a
- insinto /usr/include/${PN}
- doins SRC/*h
- dodoc README
- use doc && dodoc DOC/ug.pdf
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- doins -r EXAMPLE/* make.inc
- fi
-}
-
-pkg_postinst() {
- elog "${PN} has been designed to work with a single-threaded blas library"
- elog "Make sure to eselect one (openblas/atlas) when using superlu_mt"
-}
diff --git a/sci-misc/fitscut/fitscut-1.4.4.ebuild b/sci-misc/fitscut/fitscut-1.4.4.ebuild
deleted file mode 100644
index 677ec7e..0000000
--- a/sci-misc/fitscut/fitscut-1.4.4.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=1
-
-inherit autotools-utils
-
-DESCRIPTION="Extract cutouts from FITS image files"
-HOMEPAGE="http://acs.pha.jhu.edu/general/software/fitscut/"
-SRC_URI="${HOMEPAGE}/download/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=sci-libs/cfitsio-3:0=
- sci-astronomy/wcstools:0=
- media-libs/libpng:0=
- virtual/jpeg:0="
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- # gentoo wcs is called wcstools to avoid conflict with wcslib
- sed -i \
- -e 's/libwcs/wcs/g' \
- wcs*.c fitscut.c || die
- # cfitsio/fitsio.h might conflict with host on prefix
- sed -i \
- -e 's/LIB(wcs,/LIB(wcstools,/' \
- -e 's/-lwcs/-lwcstools/' \
- -e '/cfitsio\/fitsio.h/d' \
- configure.in || die
- autotools-utils_src_prepare
-}
diff --git a/sci-misc/fitscut/metadata.xml b/sci-misc/fitscut/metadata.xml
deleted file mode 100644
index cc63d59..0000000
--- a/sci-misc/fitscut/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-astronomy@gentoo.org</email>
- <name>Gentoo Astronomy Project</name>
- </maintainer>
- <longdescription lang="en">
- fitscut is designed to extract cutouts from FITS image format
- files. FITS, PNG, and JPEG output types are supported.
- When multiple input files are specified and the output type is PNG or
- JPEG the resulting image is an RGB color image.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-physics/herwig++/files/herwig++-2.6.3-looptools.patch b/sci-physics/herwig++/files/herwig++-2.6.3-looptools.patch
deleted file mode 100644
index 0c80297..0000000
--- a/sci-physics/herwig++/files/herwig++-2.6.3-looptools.patch
+++ /dev/null
@@ -1,64 +0,0 @@
---- Looptools/Makefile.am
-+++ Looptools/Makefile.am
-@@ -1,58 +1,12 @@
--noinst_LTLIBRARIES = libHwLooptoolsXFC.la libHwLooptoolsCFC.la
--noinst_LTLIBRARIES += libHwLooptools.la
--
--EXTRA_DIST = include/lt.h include/ftypes.h include/ff.h include/ffwarn.h \
-- include/fferr.h include/defs.h include/looptools.h include/ffperm5.h \
-- include/clooptools.h include/cexternals.h include/externals.h \
-- util/solve-LU.F util/solve-LU.h util/solve-Eigen.F
--
--theXFCSOURCES = \
--A/A0.F A/A00.F A/ffxa0.F A/ffca0.F B/Bget.F \
--B/Bcoeff.F B/BcoeffC.F B/Bcoeffa.F B/Bcoeffb.F B/ffxb0.F \
--B/ffcb0.F B/ffxb1.F B/ffcb1.F B/ffxb2p.F B/ffcb2p.F \
--B/ffxdb0.F B/ffcdb0.F B/ffxdb1.F B/ffdel2.F B/ffcel2.F \
--C/C0.F C/C0C.F C/Cget.F C/ffxc0.F C/ffcc0.F \
--C/ffxc0i.F C/ffxc0p.F C/ffxc0p0.F C/ffcc0p.F C/ffdxc0.F \
--C/ffdel3.F C/ffcel3.F D/D0.F D/D0C.F D/Dget.F \
--D/ffxd0.F D/ffxd0h.F D/ffxd0i.F D/ffxd0p.F D/ffxd0m0.F \
--D/ffxd0tra.F D/ffxdbd.F D/ffdcc0.F D/ffdel4.F D/ffd0c.F \
--D/ffTn.F D/ffT13.F D/ffS2.F D/ffS3n.F D/ffRn.F \
--E/E0.F E/Eget.F E/Ecoeffa.F E/Ecoeffb.F E/ffxe0.F \
--E/ffdel5.F util/ini.F util/auxCD.F util/solve.F util/Dump.F \
--util/Li2.F util/ffinit.F util/ffxli2.F util/ffcli2.F util/ffxxyz.F \
--util/ffcxyz.F util/ffcrr.F util/ffcxr.F util/fftran.F util/ffabcd.F \
--util/ff2dl2.F util/ffcxs3.F util/ffcxs4.F util/ffdcxs.F util/ffbndc.F
--
--## the following need -DCOMPLEXPARA
--theCFCSOURCES = \
--A/A0.F A/A00.F B/Bget.F B/Bcoeffa.F C/Cget.F D/Dget.F E/E0.F \
--E/Eget.F E/Ecoeffa.F E/Ecoeffb.F util/solve.F util/Dump.F util/Li2.F
-+noinst_LTLIBRARIES = libHwLooptools.la
-
- commonCPPFLAGS = $(AM_CPPFLAGS) -I$(srcdir)/include
-
--libHwLooptoolsXFC_la_SOURCES = $(theXFCSOURCES)
--libHwLooptoolsXFC_la_CPPFLAGS = $(commonCPPFLAGS)
--libHwLooptoolsXFC_la_FCFLAGS = $(AM_FCFLAGS) -ffixed-line-length-none
--libHwLooptoolsXFC_la_FFLAGS = $(AM_FFLAGS) -ffixed-line-length-none
--
--libHwLooptoolsCFC_la_SOURCES = $(theCFCSOURCES)
--libHwLooptoolsCFC_la_CPPFLAGS = $(commonCPPFLAGS) -DCOMPLEXPARA
--libHwLooptoolsCFC_la_FCFLAGS = $(AM_FCFLAGS) -ffixed-line-length-none
--libHwLooptoolsCFC_la_FFLAGS = $(AM_FFLAGS) -ffixed-line-length-none
--
--## installed already from "include/Makefile.am"
--## noinst_HEADERS = include/clooptools.h
--
--##if NEED_APPLE_FIXES
--##libHwLooptoolsXFC_la_LDFLAGS = -Wl,-single_module
--##libHwLooptoolsCFC_la_LDFLAGS = -Wl,-single_module
--##endif
--
--libHwLooptools_la_SOURCES = util/cache.c clooptools.cc
-+libHwLooptools_la_SOURCES = clooptools.cc
- libHwLooptools_la_CXXFLAGS = $(AM_CXXFLAGS) -Wno-strict-aliasing
- libHwLooptools_la_CPPFLAGS = $(commonCPPFLAGS)
- libHwLooptools_la_CFLAGS = $(AM_CFLAGS) -std=c99
--libHwLooptools_la_LIBADD = libHwLooptoolsXFC.la libHwLooptoolsCFC.la
-+libHwLooptools_la_LIBADD = -looptools
-
-
- ## libHwLooptoolsHelper2_la_SOURCES = clooptools.cc
diff --git a/sci-physics/herwig++/herwig++-2.7.0-r2.ebuild b/sci-physics/herwig++/herwig++-2.7.0-r2.ebuild
deleted file mode 100644
index 05ab0f2..0000000
--- a/sci-physics/herwig++/herwig++-2.7.0-r2.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=1
-AUTOTOOLS_IN_SOURCE_BUILD=1
-
-inherit autotools-utils eutils flag-o-matic multilib
-
-MYP=Herwig++-${PV}
-
-DESCRIPTION="High-Energy Physics event generator"
-HOMEPAGE="http://herwig.hepforge.org/"
-SRC_URI="http://www.hepforge.org/archive/herwig/${MYP}.tar.bz2"
-
-LICENSE="GPL-2"
-
-SLOT="0/14"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="c++11 fastjet static-libs"
-
-RDEPEND="
- dev-libs/boost:0=
- sci-libs/gsl:0=
- <=sci-physics/looptools-2.8:0=
- >=sci-physics/thepeg-1.9.1:0=
- fastjet? ( sci-physics/fastjet:0= )"
-DEPEND="${RDEPEND}
- virtual/fortran"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${PN}-2.6.3-looptools.patch
- find -name 'Makefile.am' -exec \
- sed -i -e '1ipkgdatadir=$(datadir)/herwig++' {} \; || die
- autotools-utils_src_prepare
-}
-
-src_configure() {
- use prefix && \
- append-ldflags -Wl,-rpath,"${EPREFIX}"/usr/$(get_libdir)/ThePEG
- local myeconfargs=(
- --with-boost="${EPREFIX}"/usr
- --with-thepeg="${EPREFIX}"/usr
- $(use_enable c++11 stdcxx11)
- $(use_with fastjet fastjet "${EPREFIX}"/usr)
- )
- autotools-utils_src_configure
-}
-
-pkg_preinst () {
- sed -i -e "s|${ED}||g" "${ED}"/usr/share/herwig++/defaults/PDF.in || die
- sed -i -e "s|${ED}||g" "${ED}"/usr/share/herwig++/HerwigDefaults.rpo || die
-}
diff --git a/sci-physics/herwig++/metadata.xml b/sci-physics/herwig++/metadata.xml
deleted file mode 100644
index 8db6bd6..0000000
--- a/sci-physics/herwig++/metadata.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="person">
- <email>jauhien@gentoo.org</email>
-</maintainer>
-<maintainer type="project">
- <email>sci-physics@gentoo.org</email>
- <name>Gentoo Physics Project</name>
-</maintainer>
-<longdescription>
- Herwig++ is a completely new event generator, written in C++.
- It is built on the experience gained with the well-known
- event generator HERWIG. The aim is to provide a multi purpose
- event generator with similar or improved capabilities (like angular
- ordered parton evolution and the cluster hadronization model).
-</longdescription>
-<use>
- <flag name="c++11">Build Herwig++ using the C++11 standard.
- Experimental feature, not for production use.</flag>
- <flag name="fastjet">Adds support for <pkg>sci-physics/fastjet</pkg></flag>
-</use>
-</pkgmetadata>
diff --git a/sci-physics/looptools/files/looptools-2.10-makefile.patch b/sci-physics/looptools/files/looptools-2.10-makefile.patch
deleted file mode 100644
index 8758244..0000000
--- a/sci-physics/looptools/files/looptools-2.10-makefile.patch
+++ /dev/null
@@ -1,98 +0,0 @@
---- makefile.in
-+++ makefile.in
-@@ -1,14 +1,17 @@
- BLD = build$(QUADSUFFIX)
-
--LIBDIR = $(PREFIX)/lib$(LIBDIRSUFFIX)
--INCLUDEDIR = $(PREFIX)/include
--BINDIR = $(PREFIX)/bin
-+LIBDIR = $(DESTDIR)/$(PREFIX)/lib$(LIBDIRSUFFIX)
-+INCLUDEDIR = $(DESTDIR)/$(PREFIX)/include
-+BINDIR = $(DESTDIR)/$(PREFIX)/bin
-
- LIB = libooptools$(QUADSUFFIX).a
- FE = lt$(QUADSUFFIX)$(EXE)
- MFE = LoopTools$(QUADSUFFIX)$(EXE)
- INCLUDE = $(BLD)/looptools.h $(BLD)/clooptools.h
-
-+LIBRARY=libooptools.so
-+REALNAME=$(LIBRARY).$(VER)
-+
- ARGS = $(PARALLEL) \
- LIB="$(LIB)" \
- FE="$(FE)" \
-@@ -16,12 +19,12 @@
- EXE="$(EXE)" \
- DEF="$(DEF)" \
- NOUNDERSCORE="$(NOUNDERSCORE)" \
-- XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I." \
-+ XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I. -fPIC" \
- F90="$(F90)" \
- CC="$(CC)" \
-- CFLAGS="$(CFLAGS) $(CFLAGS-quad)" \
-+ CFLAGS="$(CFLAGS) $(CFLAGS-quad) -fPIC" \
- CXX="$(CXX)" \
-- CXXFLAGS="$(CXXFLAGS)" \
-+ CXXFLAGS="$(CXXFLAGS) -fPIC" \
- ML="$(ML)" \
- MCC="$(MCC)" \
- MCFLAGS="$(MCFLAGS)" \
-@@ -32,22 +35,24 @@
- DLLTOOL="$(DLLTOOL)" \
- LDFLAGS="$(LDFLAGS)" \
- LIBPATH="$(LIBPATH)" \
-- OBJS-quad="$(OBJS-quad)"
-+ OBJS-quad="$(OBJS-quad)" \
-+ REALNAME="$(REALNAME)"
-
-
--default all lib frontend mma: force
-+default all lib solib frontend mma: force
- cd $(BLD) && $(MAKE) $(ARGS) $@
-
--install: lib frontend
-- -mkdir $(PREFIX)
-+install: lib solib frontend
-+ -mkdir $(DESTDIR)$(PREFIX)
- -mkdir $(LIBDIR) $(BINDIR) $(INCLUDEDIR)
- cp -p $(BLD)/$(LIB) $(LIBDIR)
- cp -p $(INCLUDE$(QUADSUFFIX)) $(INCLUDEDIR)
-- strip $(BLD)/$(FE)
- cp -p $(BLD)/fcc $(BLD)/$(FE) $(BINDIR)
- rm -f $(BINDIR)/f++
- ln -s fcc $(BINDIR)/f++
-- test ! -f $(BLD)/$(MFE) || { strip $(BLD)/$(MFE) ; cp -p $(BLD)/$(MFE) $(BINDIR); }
-+ test ! -f $(BLD)/$(MFE) || { cp -p $(BLD)/$(MFE) $(BINDIR); }
-+ cp -p $(BLD)/$(REALNAME) $(LIBDIR)
-+ cd $(LIBDIR) && ln -s $(REALNAME) $(LIBRARY)
-
- force: $(BLD)/timestamp
-
---- src/makefile
-+++ src/makefile
-@@ -1,6 +1,6 @@
--default: frontend mma$(ML)
-+default: frontend mma$(ML) solib
-
--all: frontend mma1
-+all: frontend mma1 solib
-
- frontend: lib $(FE)
-
-@@ -8,6 +8,7 @@
-
- mma0 lib: $(LIB) clooptools.h fcc
-
-+solib: $(REALNAME) fcc
-
- .SUFFIXES:
-
-@@ -243,6 +244,8 @@
- $(AR) cru $(LIB) $?
- -$(RANLIB) $(LIB)
-
-+$(REALNAME): $(OBJS)
-+ $(XFC) $(LDFLAGS) -shared -Wl,--soname,$(REALNAME) -o $@ $?
-
- $(FE): lt.F $(LTINC) $(LIB)
- $(XFC) -o $(FE) lt.F $(LIB) -lpthread
diff --git a/sci-physics/looptools/files/looptools-2.8-makefile.patch b/sci-physics/looptools/files/looptools-2.8-makefile.patch
deleted file mode 100644
index 5252c1d..0000000
--- a/sci-physics/looptools/files/looptools-2.8-makefile.patch
+++ /dev/null
@@ -1,96 +0,0 @@
---- makefile.in
-+++ makefile.in
-@@ -1,14 +1,17 @@
- BLD = build$(QUADSUFFIX)
-
--LIBDIR = $(PREFIX)/lib$(LIBDIRSUFFIX)
--INCLUDEDIR = $(PREFIX)/include
--BINDIR = $(PREFIX)/bin
-+LIBDIR = $(DESTDIR)/$(PREFIX)/lib$(LIBDIRSUFFIX)
-+INCLUDEDIR = $(DESTDIR)/$(PREFIX)/include
-+BINDIR = $(DESTDIR)/$(PREFIX)/bin
-
- LIB = libooptools$(QUADSUFFIX).a
- FE = lt$(QUADSUFFIX)$(EXE)
- MFE = LoopTools$(QUADSUFFIX)$(EXE)
- INCLUDE = $(BLD)/looptools.h $(BLD)/clooptools.h
-
-+LIBRARY=libooptools.so
-+REALNAME=$(LIBRARY).$(VER)
-+
- ARGS = $(PARALLEL) \
- LIB="$(LIB)" \
- FE="$(FE)" \
-@@ -16,12 +19,12 @@
- EXE="$(EXE)" \
- DEF="$(DEF)" \
- NOUNDERSCORE="$(NOUNDERSCORE)" \
-- XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I." \
-+ XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I. -fPIC" \
- F90="$(F90)" \
- CC="$(CC)" \
-- CFLAGS="$(CFLAGS) $(CFLAGS-quad)" \
-+ CFLAGS="$(CFLAGS) $(CFLAGS-quad) -fPIC" \
- CXX="$(CXX)" \
-- CXXFLAGS="$(CXXFLAGS)" \
-+ CXXFLAGS="$(CXXFLAGS) -fPIC" \
- ML="$(ML)" \
- MCC="$(MCC)" \
- MCFLAGS="$(MCFLAGS)" \
-@@ -31,20 +34,22 @@
- DLLTOOL="$(DLLTOOL)" \
- LDFLAGS="$(LDFLAGS)" \
- LIBPATH="$(LIBPATH)" \
-- OBJS-quad="$(OBJS-quad)"
-+ OBJS-quad="$(OBJS-quad)" \
-+ REALNAME="$(REALNAME)"
-
-
--default all lib frontend mma: force
-+default all lib solib frontend mma: force
- cd $(BLD) && $(MAKE) $(ARGS) $@
-
--install: lib frontend
-- -mkdir $(PREFIX)
-+install: lib solib frontend
-+ -mkdir $(DESTDIR)$(PREFIX)
- -mkdir $(LIBDIR) $(BINDIR) $(INCLUDEDIR)
- cp -p $(BLD)/$(LIB) $(LIBDIR)
- cp -p $(INCLUDE$(QUADSUFFIX)) $(INCLUDEDIR)
-- strip $(BLD)/$(FE)
- cp -p $(BLD)/fcc $(BLD)/$(FE) $(BINDIR)
-- test ! -f $(BLD)/$(MFE) || { strip $(BLD)/$(MFE) ; cp -p $(BLD)/$(MFE) $(BINDIR); }
-+ test ! -f $(BLD)/$(MFE) || { cp -p $(BLD)/$(MFE) $(BINDIR); }
-+ cp -p $(BLD)/$(REALNAME) $(LIBDIR)
-+ cd $(LIBDIR) && ln -s $(REALNAME) $(LIBRARY)
-
- force: $(BLD)/timestamp
-
---- src/makefile
-+++ src/makefile
-@@ -1,6 +1,6 @@
--default: frontend mma$(ML)
-+default: frontend mma$(ML) solib
-
--all: frontend mma1
-+all: frontend mma1 solib
-
- frontend: lib $(FE)
-
-@@ -8,6 +8,7 @@
-
- mma0 lib: $(LIB) clooptools.h fcc
-
-+solib: $(REALNAME) fcc
-
- .SUFFIXES:
-
-@@ -247,6 +248,8 @@
- $(AR) cru $(LIB) $?
- -$(RANLIB) $(LIB)
-
-+$(REALNAME): $(OBJS)
-+ $(XFC) $(LDFLAGS) -shared -Wl,--soname,$(REALNAME) -o $@ $?
-
- $(FE): lt.F $(LTINC) $(LIB)
- $(XFC) -o $(FE) lt.F $(LIB)
diff --git a/sci-physics/looptools/looptools-2.10.ebuild b/sci-physics/looptools/looptools-2.10.ebuild
deleted file mode 100644
index 008a5ca..0000000
--- a/sci-physics/looptools/looptools-2.10.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit eutils fortran-2 multilib
-
-MYP=LoopTools-${PV}
-
-DESCRIPTION="Tools for evaluation of scalar and tensor one-loop integrals"
-HOMEPAGE="http://www.feynarts.de/looptools"
-SRC_URI="http://www.feynarts.de/looptools/${MYP}.tar.gz"
-
-LICENSE="LGPL-3"
-
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc static-libs"
-
-DEPEND="virtual/fortran"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-makefile.patch
- export VER="${PV}"
- # necessary fix for prefix
- sed -i "s/lib\$(LIBDIRSUFFIX)/$(get_libdir)/" makefile.in || die
-}
-
-src_install() {
- default
- # another one of these package building archive with pic
- # no: ooptools is not a typo
- use static-libs || rm "${ED}"/usr/$(get_libdir)/libooptools.a
- use doc && dodoc manual/*.pdf
-}
diff --git a/sci-physics/looptools/looptools-2.11.ebuild b/sci-physics/looptools/looptools-2.11.ebuild
deleted file mode 100644
index 04f017d..0000000
--- a/sci-physics/looptools/looptools-2.11.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit eutils fortran-2 multilib
-
-MYP=LoopTools-${PV}
-
-DESCRIPTION="Tools for evaluation of scalar and tensor one-loop integrals"
-HOMEPAGE="http://www.feynarts.de/looptools"
-SRC_URI="http://www.feynarts.de/looptools/${MYP}.tar.gz"
-
-LICENSE="LGPL-3"
-
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc static-libs"
-
-DEPEND="virtual/fortran"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${PN}-2.10-makefile.patch
- export VER="${PV}"
- # necessary fix for prefix
- sed -i "s/lib\$(LIBDIRSUFFIX)/$(get_libdir)/" makefile.in || die
-}
-
-src_install() {
- default
- # another one of these package building archive with pic
- # no: ooptools is not a typo
- use static-libs || rm "${ED}"/usr/$(get_libdir)/libooptools.a
- use doc && dodoc manual/*.pdf
-}
diff --git a/sci-physics/looptools/looptools-2.9.ebuild b/sci-physics/looptools/looptools-2.9.ebuild
deleted file mode 100644
index 64a53bb..0000000
--- a/sci-physics/looptools/looptools-2.9.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit eutils fortran-2 multilib
-
-MYP=LoopTools-${PV}
-
-DESCRIPTION="Tools for evaluation of scalar and tensor one-loop integrals"
-HOMEPAGE="http://www.feynarts.de/looptools"
-SRC_URI="http://www.feynarts.de/looptools/${MYP}.tar.gz"
-
-LICENSE="LGPL-3"
-
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc static-libs"
-
-DEPEND="virtual/fortran"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${PN}-2.8-makefile.patch
- export VER="${PV}"
- # necessary fix for prefix
- sed -i "s/lib\$(LIBDIRSUFFIX)/$(get_libdir)/" makefile.in || die
-}
-
-src_install() {
- default
- # another one of these package building archive with pic
- # no: ooptools is not a typo
- use static-libs || rm "${ED}"/usr/$(get_libdir)/libooptools.a
- use doc && dodoc manual/*.pdf
-}
diff --git a/sci-physics/looptools/metadata.xml b/sci-physics/looptools/metadata.xml
deleted file mode 100644
index 4333af5..0000000
--- a/sci-physics/looptools/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="project">
- <email>sci-physics@gentoo.org</email>
- <name>Gentoo Physics Project</name>
-</maintainer>
-<longdescription>
- A package for evaluation of scalar and tensor one-loop integrals
- based on the FF package by G.J. van Oldenborgh.
- It features an easy Fortran, C++, and Mathematica interface
- to the scalar one-loop functions of FF and in addition provides
- the 2-, 3-, and 4-point tensor coefficient functions.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-physics/rivet/metadata.xml b/sci-physics/rivet/metadata.xml
deleted file mode 100644
index 532272a..0000000
--- a/sci-physics/rivet/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="project">
- <email>sci-physics@gentoo.org</email>
- <name>Gentoo Physics Project</name>
-</maintainer>
-<longdescription>
- The Rivet project (Robust Independent Validation of Experiment and
- Theory) is a toolkit for validation of Monte Carlo event
- generators. It provides a large (and ever growing) set of
- experimental analyses useful for MC generator development,
- validation, and tuning, as well as a convenient infrastructure for
- adding your own analyses. Rivet is the most widespread way by which
- analysis code from the LHC and other high-energy collider
- experiments is preserved for comparison to and development of future
- theory models.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-physics/rivet/rivet-2.1.1.ebuild b/sci-physics/rivet/rivet-2.1.1.ebuild
deleted file mode 100644
index 12f29d9..0000000
--- a/sci-physics/rivet/rivet-2.1.1.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-AUTOTOOLS_AUTORECONF=1
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 autotools-utils bash-completion-r1
-
-MYP=Rivet-${PV}
-
-DESCRIPTION="Toolkit for validation of Monte Carlo HEP event generators"
-HOMEPAGE="http://rivet.hepforge.org/"
-
-SRC_URI="http://www.hepforge.org/archive/${PN}/${MYP}.tar.bz2"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc python static-libs"
-
-RDEPEND="
- dev-libs/boost:0=
- sci-libs/gsl:0=
- sci-physics/fastjet:0=[plugins]
- sci-physics/hepmc:0=
- sci-physics/yoda:0=[python]
- python? ( ${PYTHON_DEPS} )"
-DEPEND="${RDEPEND}
- doc? ( app-doc/doxygen[latex,dot] )
- python? ( dev-python/cython[${PYTHON_USEDEP}] )"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-S="${WORKDIR}/${MYP}"
-
-#PATCHES=( "${FILESDIR}"/${P}-system-yaml-cpp.patch )
-
-pkg_setup() {
- use python && python-single-r1_pkg_setup
-}
-
-src_configure() {
- local myeconfargs=(
- $(use_enable python pyext)
- )
- autotools-utils_src_configure
-}
-
-src_compile() {
- autotools-utils_src_compile
- use doc && doxygen Doxyfile
-}
-
-src_install() {
- autotools-utils_src_install
- newbashcomp "${ED}"/usr/share/Rivet/rivet-completion rivet
- use doc && dohtml -r doxy/html/* && dodoc doc/rivet-manual.pdf
-}
diff --git a/sci-physics/rivet/rivet-2.1.2.ebuild b/sci-physics/rivet/rivet-2.1.2.ebuild
deleted file mode 100644
index 12f29d9..0000000
--- a/sci-physics/rivet/rivet-2.1.2.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-AUTOTOOLS_AUTORECONF=1
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 autotools-utils bash-completion-r1
-
-MYP=Rivet-${PV}
-
-DESCRIPTION="Toolkit for validation of Monte Carlo HEP event generators"
-HOMEPAGE="http://rivet.hepforge.org/"
-
-SRC_URI="http://www.hepforge.org/archive/${PN}/${MYP}.tar.bz2"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc python static-libs"
-
-RDEPEND="
- dev-libs/boost:0=
- sci-libs/gsl:0=
- sci-physics/fastjet:0=[plugins]
- sci-physics/hepmc:0=
- sci-physics/yoda:0=[python]
- python? ( ${PYTHON_DEPS} )"
-DEPEND="${RDEPEND}
- doc? ( app-doc/doxygen[latex,dot] )
- python? ( dev-python/cython[${PYTHON_USEDEP}] )"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-S="${WORKDIR}/${MYP}"
-
-#PATCHES=( "${FILESDIR}"/${P}-system-yaml-cpp.patch )
-
-pkg_setup() {
- use python && python-single-r1_pkg_setup
-}
-
-src_configure() {
- local myeconfargs=(
- $(use_enable python pyext)
- )
- autotools-utils_src_configure
-}
-
-src_compile() {
- autotools-utils_src_compile
- use doc && doxygen Doxyfile
-}
-
-src_install() {
- autotools-utils_src_install
- newbashcomp "${ED}"/usr/share/Rivet/rivet-completion rivet
- use doc && dohtml -r doxy/html/* && dodoc doc/rivet-manual.pdf
-}
diff --git a/sci-physics/yoda/metadata.xml b/sci-physics/yoda/metadata.xml
deleted file mode 100644
index 8075483..0000000
--- a/sci-physics/yoda/metadata.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="project">
- <email>sci-physics@gentoo.org</email>
- <name>Gentoo Physics Project</name>
-</maintainer>
-<longdescription>
- Yet more Objects for Data Analysis is a small set of data analysis
- (specifically histogramming) classes being developed by MCnet
- members as a lightweight common system for MC event generator
- validation analyses, particularly as the core histogramming system
- in Rivet.
-</longdescription>
-<use>
- <flag name="root">Adds support for <pkg>sci-physics/root</pkg></flag>
-</use>
-</pkgmetadata>
diff --git a/sci-physics/yoda/yoda-1.0.6.ebuild b/sci-physics/yoda/yoda-1.0.6.ebuild
deleted file mode 100644
index ab1a835..0000000
--- a/sci-physics/yoda/yoda-1.0.6.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 autotools-utils bash-completion-r1
-
-MYP=YODA-${PV}
-
-DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
-HOMEPAGE="http://yoda.hepforge.org/"
-
-SRC_URI="http://www.hepforge.org/archive/${PN}/${MYP}.tar.bz2"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="python root static-libs"
-
-RDEPEND="
- dev-libs/boost:0=
- python? ( ${PYTHON_DEPS} )
- root? ( sci-physics/root:0=[python=,${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- python? ( dev-python/cython[${PYTHON_USEDEP}] )"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-S="${WORKDIR}/${MYP}"
-
-pkg_setup() {
- use python && python-single-r1_pkg_setup
-}
-
-src_configure() {
- local myeconfargs=(
- $(use_enable python pyext)
- $(use_enable root)
- )
- autotools-utils_src_configure
-}
-
-src_install() {
- autotools-utils_src_install
- newbashcomp "${ED}"/usr/share/YODA/yoda-completion yoda
-}
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