* [gentoo-commits] repo/gentoo:master commit in: sci-libs/bliss/files/, sci-libs/bliss/
@ 2017-01-01 18:17 Christoph Junghans
0 siblings, 0 replies; 4+ messages in thread
From: Christoph Junghans @ 2017-01-01 18:17 UTC (permalink / raw
To: gentoo-commits
commit: c9e7aeca7d21e133bb1eea3132997c851ef1d069
Author: Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 1 18:16:50 2017 +0000
Commit: Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Sun Jan 1 18:17:10 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c9e7aeca
sci-libs/bliss: remove old
Package-Manager: portage-2.3.0
sci-libs/bliss/Manifest | 1 -
sci-libs/bliss/bliss-0.72.ebuild | 44 --
sci-libs/bliss/files/bliss-0.72-autotools.patch | 159 ------
sci-libs/bliss/files/bliss-0.72-fedora.patch | 648 ------------------------
4 files changed, 852 deletions(-)
diff --git a/sci-libs/bliss/Manifest b/sci-libs/bliss/Manifest
index 9cd37a6..cb6cbc2 100644
--- a/sci-libs/bliss/Manifest
+++ b/sci-libs/bliss/Manifest
@@ -1,2 +1 @@
-DIST bliss-0.72.zip 90970 SHA256 528d192b1e30722fc60f5f12c9d6c12b374d838198ae7f18fb41bedabf735ed3 SHA512 a09b3cea26e3ff5f5733f10bfaadaf6fb5a3f443e1cc306fad16af2f7b4cd97c90652315f911a324d6d71426a3d098cd5c7e5721f69c599fe2e0d6d34caa0ef5 WHIRLPOOL afbc41c04e843d383a2da8d5e26ec2882c847e8e5f1e71c05f884396fcc79eab764df628523336b88e0c6ef4fbf073a52870e2c68ded428002d9391894cb53d6
DIST bliss-0.73.zip 94108 SHA256 f57bf32804140cad58b1240b804e0dbd68f7e6bf67eba8e0c0fa3a62fd7f0f84 SHA512 30f505945c577d8bcb265a349f5bc9d4dcd96555fa3add285199cdd95ea2710f04409008ff06432daffab62c132e884845eae7f823191407906202862509e05d WHIRLPOOL 08402453515e092604105f17f5889d252c0207fa31a1125e87e04c4792cbeb77b7a585a134fd2b3108e8620bbd643cd8b7826dee8a56cf47908a922298b70ad1
diff --git a/sci-libs/bliss/bliss-0.72.ebuild b/sci-libs/bliss/bliss-0.72.ebuild
deleted file mode 100644
index dea3e3c..00000000
--- a/sci-libs/bliss/bliss-0.72.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=1
-
-inherit autotools-utils
-
-SRC_URI="http://www.tcs.hut.fi/Software/${PN}/${P}.zip"
-DESCRIPTION="A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs"
-HOMEPAGE="http://www.tcs.hut.fi/Software/bliss/index.shtml"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc gmp static-libs"
-
-RDEPEND="gmp? ( dev-libs/gmp:0= )"
-
-DEPEND="${RDEPEND}
- doc? ( app-doc/doxygen )"
-
-AUTOTOOLS_PRUNE_LIBTOOL_FILES="all" #comes with pkg-config file
-
-PATCHES=(
- "${FILESDIR}/${P}-fedora.patch"
- "${FILESDIR}/${P}-autotools.patch"
-)
-
-src_configure() {
- local myeconfargs=( $(use_with gmp) )
- autotools-utils_src_configure
-}
-
-src_compile() {
- autotools-utils_src_compile all $(usex doc html "")
-}
-
-src_install() {
- use doc && HTML_DOCS=( "${BUILD_DIR}"/html/. )
- autotools-utils_src_install
-}
diff --git a/sci-libs/bliss/files/bliss-0.72-autotools.patch b/sci-libs/bliss/files/bliss-0.72-autotools.patch
deleted file mode 100644
index 30006b9..00000000
--- a/sci-libs/bliss/files/bliss-0.72-autotools.patch
+++ /dev/null
@@ -1,159 +0,0 @@
-Replace simple Makefile by autotools
-- allow shared library
-- parallel build
-- added pkg-config support
-
-Author: Christoph Junghans <junghans@gentoo.org>
-
-diff -Naur bliss-0.72-fedora/config/.dummy bliss-0.72/config/.dummy
---- bliss-0.72-fedora/config/.dummy 1969-12-31 17:00:00.000000000 -0700
-+++ bliss-0.72/config/.dummy 2013-04-28 14:43:06.143760368 -0600
-@@ -0,0 +1 @@
-+Dummy file to make patch create config dir, which is needed for autotools
-diff -Naur bliss-0.72-fedora/configure.ac bliss-0.72/configure.ac
---- bliss-0.72-fedora/configure.ac 1969-12-31 17:00:00.000000000 -0700
-+++ bliss-0.72/configure.ac 2013-04-28 14:40:42.283242722 -0600
-@@ -0,0 +1,31 @@
-+AC_PREREQ([2.65])
-+AC_INIT([bliss], [0.72], [Tommi.Junttil@kk.fi])
-+
-+AC_CONFIG_AUX_DIR(config)
-+AC_CONFIG_MACRO_DIR(config)
-+
-+AM_INIT_AUTOMAKE([1.8 foreign])
-+
-+SHARED_VERSION_INFO="1:0:0"
-+AC_SUBST(SHARED_VERSION_INFO)
-+
-+# Checks for programs.
-+AC_PROG_CXX
-+
-+LT_INIT
-+# Checks for libraries.
-+AC_ARG_WITH([gmp],
-+ [AS_HELP_STRING([--with-gmp], [enable support for GNU Multiple Precision Arithmetic Library @<:@default=check@:>@])],
-+ [], [with_readline=no])
-+AS_IF([test "x$with_readline" != xno],
-+ [AC_CHECK_HEADERS([gmp.h],,AC_MSG_ERROR([Cannot find gmp.h header]))
-+ AC_CHECK_LIB([gmp],_init,,AC_MSG_ERROR([Cannot find gmp library]))
-+ AC_SUBST([GMP],[-lgmp])
-+ [CPPFLAGS="$CPPFLAGS -DBLISS_USE_GMP"]])
-+
-+AC_CHECK_PROG(DOXYGEN,doxygen,doxygen,no)
-+AM_CONDITIONAL(HAVE_DOXYGEN,[test .$DOXYGEN != .no])
-+
-+AC_CONFIG_FILES([Makefile])
-+AC_CONFIG_FILES([bliss.pc])
-+AC_OUTPUT
-diff -Naur bliss-0.72-fedora/bliss.pc.in bliss-0.72/bliss.pc.in
---- bliss-0.72-fedora/bliss.pc.in 1969-12-31 17:00:00.000000000 -0700
-+++ bliss-0.72/bliss.pc.in 2013-04-28 14:40:54.223285686 -0600
-@@ -0,0 +1,13 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: bliss
-+Description: Library for Computing Automorphism Groups and Canonical Labelings of Graphs
-+URL: http://www.tcs.hut.fi/Software/bliss/index.shtml
-+Version: @VERSION@
-+Requires:
-+Libs: -L${libdir} -lbliss @GMP@
-+Libs.private: -lm
-+Cflags: -I${includedir}
-diff -Naur bliss-0.72-fedora/Makefile bliss-0.72/Makefile
---- bliss-0.72-fedora/Makefile 2013-04-28 14:40:10.543128514 -0600
-+++ bliss-0.72/Makefile 1969-12-31 17:00:00.000000000 -0700
-@@ -1,57 +0,0 @@
--CFLAGS = -I.
--CFLAGS += -g
--#CFLAGS += -pg
--CFLAGS += -Wall
--CFLAGS += --pedantic
--CFLAGS += -O9
--#CFLAGS += -DBLISS_DEBUG
--CFLAGS += -fPIC
--
--SRCS = defs.cc graph.cc partition.cc orbit.cc uintseqhash.cc heap.cc
--SRCS += timer.cc utils.cc bliss_C.cc
--
--OBJS = $(addsuffix .o, $(basename $(SRCS)))
--
--GMPOBJS = $(addsuffix g, $(OBJS))
--
--LIB =
--#LIB += /usr/lib/ccmalloc.o -ldl
--
--CC = g++
--RANLIB = ranlib
--AR = ar
--BLISSLIB = libbliss.a
--
--gmp: LIB += -lgmp
--gmp: CFLAGS += -DBLISS_USE_GMP
--
--normal: bliss
--gmp: bliss_gmp
--
--
--all:: lib bliss
--
--%.o %.og: %.cc
-- $(CC) $(CFLAGS) -c -o $@ $<
--
--lib: $(OBJS)
-- rm -f $(BLISSLIB)
-- $(AR) cr $(BLISSLIB) $(OBJS)
-- $(RANLIB) $(BLISSLIB)
--
--lib_gmp: $(GMPOBJS)
-- rm -f $(BLISSLIB)
-- $(AR) cr $(BLISSLIB) $(GMPOBJS)
-- $(RANLIB) $(BLISSLIB)
--
--bliss: bliss.o lib $(OBJS)
-- $(CC) $(CFLAGS) -o bliss bliss.o $(OBJS) $(LIB)
--
--bliss_gmp: bliss.og lib_gmp $(GMPOBJS)
-- $(CC) $(CFLAGS) -o bliss bliss.og $(GMPOBJS) $(LIB)
--
--
--clean:
-- rm -f bliss $(BLISSLIB) $(OBJS) bliss.o $(GMPOBJS) bliss.og
--
--# DO NOT DELETE
-diff -Naur bliss-0.72-fedora/Makefile.am bliss-0.72/Makefile.am
---- bliss-0.72-fedora/Makefile.am 1969-12-31 17:00:00.000000000 -0700
-+++ bliss-0.72/Makefile.am 2013-04-28 14:47:26.944698789 -0600
-@@ -0,0 +1,30 @@
-+ACLOCAL_AMFLAGS = -I config
-+
-+lib_LTLIBRARIES = libbliss.la
-+
-+libbliss_la_LDFLAGS = -no-undefined -version-info @SHARED_VERSION_INFO@
-+libbliss_la_SOURCES = \
-+ defs.cc graph.cc partition.cc orbit.cc uintseqhash.cc heap.cc \
-+ timer.cc utils.cc bliss_C.cc
-+
-+pkginclude_HEADERS = \
-+ bignum.hh bliss_C.h defs.hh graph.hh heap.hh kqueue.hh kstack.hh \
-+ orbit.hh partition.hh timer.hh uintseqhash.hh utils.hh
-+
-+bin_PROGRAMS = bliss
-+bliss_SOURCES = bliss.cc
-+bliss_LDADD = libbliss.la
-+dist_man1_MANS = bliss.1
-+
-+pkgconfigdir = $(libdir)/pkgconfig
-+pkgconfig_DATA = bliss.pc
-+
-+html-local: Doxyfile
-+if HAVE_DOXYGEN
-+ $(DOXYGEN) $(srcdir)/Doxyfile
-+else
-+ @echo "doxygen was not found, please re-run configure"
-+endif
-+
-+clean-local:
-+ -rm -rf html
diff --git a/sci-libs/bliss/files/bliss-0.72-fedora.patch b/sci-libs/bliss/files/bliss-0.72-fedora.patch
deleted file mode 100644
index e1f8b66..00000000
--- a/sci-libs/bliss/files/bliss-0.72-fedora.patch
+++ /dev/null
@@ -1,648 +0,0 @@
-Pulled on 28-04-13 from
-http://pkgs.fedoraproject.org/cgit/bliss.git/tree/
-
-- Man page written by Jerry James using text borrowed from the sources.
- The man page therefore has the same copyright and license as the sources.
-- Don't call exit() in library code.
-- Patch from Thomas Rehn, also sent upstream. Fix one bug and add one
- performance enhancement.
-
-diff -Naur bliss-0.72.orig/bliss.1 bliss-0.72/bliss.1
---- bliss-0.72.orig/bliss.1 1969-12-31 17:00:00.000000000 -0700
-+++ bliss-0.72/bliss.1 2013-04-28 14:35:37.000000000 -0600
-@@ -0,0 +1,55 @@
-+.TH "BLISS" "1" "@VERSION@" "Tommi Junttila & Petteri Kaski" "User Commands"
-+.SH "NAME"
-+bliss \- Compute automorphism groups and canonical labelings of graphs
-+.SH "SYNOPSIS"
-+.B bliss
-+[\fIOPTIONS\fR] [<\fIGRAPH FILE\fR>]
-+.SH "DESCRIPTION"
-+.PP
-+Bliss is an open source tool for computing automorphism groups and
-+canonical forms of graphs. The graphs are specified in DIMACS format.
-+.TP
-+\fB\-directed\fR
-+the input graph is directed
-+.TP
-+\fB\-can\fR
-+compute canonical form
-+.TP
-+\fB\-ocan\fR=\fIf\fR
-+compute canonical form and output it in file \fIf\fR
-+.TP
-+\fB\-v\fR=\fIN\fR
-+set verbosity level to N [N >= 0, default: 1]
-+.TP
-+\fB\-sh\fR=\fIX\fR
-+select splitting heuristics, where X is:
-+.TS
-+tab(;);
-+R L.
-+f;first non-singleton cell
-+fl;first largest non-singleton cell
-+fs;first smallest non-singleton cell
-+fm;first maximally non-trivially connected non-singleton cell
-+flm;first largest maximally non-trivially connected
-+;non-singleton cell
-+fsm;first smallest maximally non-trivially connected
-+;non-singleton cell (default)
-+.TE
-+.TP
-+\fB\-fr\fR=\fIX\fR
-+use failure recording? [X=y/n, default: y]
-+.TP
-+\fB\-cr\fR=\fIX\fR
-+use component recursion? [X=y/n, default: y]
-+.TP
-+\fB\-version\fR
-+print the version number and exit
-+.TP
-+\fB\-help\fR
-+print this help and exit
-+.SH "AUTHORS"
-+Bliss was written by Tommi Junttila <Tommi.Junttila@tkk.fi> and
-+Petteri Kaski <petteri.kaski@aalto.fi>.
-+.PP
-+This man page was written by Jerry James <loganjerry@gmail.com>.
-+It is distributed under the same terms as bliss.
-diff -Naur bliss-0.72.orig/bliss.cc bliss-0.72/bliss.cc
---- bliss-0.72.orig/bliss.cc 2013-04-28 14:35:20.582085167 -0600
-+++ bliss-0.72/bliss.cc 2013-04-28 14:36:28.792330603 -0600
-@@ -276,13 +276,16 @@
- if(opt_canonize == false)
- {
- /* No canonical labeling, only automorphism group */
-- g->find_automorphisms(stats, &report_aut, stdout);
-+ if (!g->find_automorphisms(stats, &report_aut, stdout))
-+ exit(1);
- }
- else
- {
- /* Canonical labeling and automorphism group */
- const unsigned int* cl = g->canonical_form(stats, &report_aut, stdout);
-
-+ if (!cl)
-+ exit(1);
- fprintf(stdout, "Canonical labeling: ");
- bliss::print_permutation(stdout, g->get_nof_vertices(), cl, 1);
- fprintf(stdout, "\n");
-@@ -290,6 +293,8 @@
- if(opt_output_can_file)
- {
- bliss::AbstractGraph* cf = g->permute(cl);
-+ if (!cf)
-+ exit(1);
- FILE* const fp = fopen(opt_output_can_file, "w");
- if(!fp)
- _fatal("Cannot open '%s' for outputting the canonical form, aborting", opt_output_can_file);
-diff -Naur bliss-0.72.orig/bliss_C.cc bliss-0.72/bliss_C.cc
---- bliss-0.72.orig/bliss_C.cc 2013-04-28 14:35:20.582085167 -0600
-+++ bliss-0.72/bliss_C.cc 2013-04-28 14:36:28.792330603 -0600
-@@ -131,7 +131,7 @@
- }
-
- extern "C"
--void
-+int
- bliss_find_automorphisms(BlissGraph *graph,
- void (*hook)(void *user_param,
- unsigned int n,
-@@ -142,7 +142,8 @@
- bliss::Stats s;
- assert(graph);
- assert(graph->g);
-- graph->g->find_automorphisms(s, hook, hook_user_param);
-+ if (!graph->g->find_automorphisms(s, hook, hook_user_param))
-+ return 0;
-
- if(stats)
- {
-@@ -154,6 +155,7 @@
- stats->nof_generators = s.get_nof_generators();
- stats->max_level = s.get_max_level();
- }
-+ return 1;
- }
-
-
-@@ -173,7 +175,7 @@
-
- canonical_labeling = graph->g->canonical_form(s, hook, hook_user_param);
-
-- if(stats)
-+ if(canonical_labeling && stats)
- {
- stats->group_size_approx = s.get_group_size_approx();
- stats->nof_nodes = s.get_nof_nodes();
-diff -Naur bliss-0.72.orig/bliss_C.h bliss-0.72/bliss_C.h
---- bliss-0.72.orig/bliss_C.h 2013-04-28 14:35:20.582085167 -0600
-+++ bliss-0.72/bliss_C.h 2013-04-28 14:36:28.792330603 -0600
-@@ -156,6 +156,7 @@
- * The argument \a perm should be an array of
- * N=bliss::bliss_get_nof_vertices(\a graph) elements describing
- * a bijection on {0,...,N-1}.
-+ * Returns NULL if insufficient memory or internal error.
- */
- BlissGraph *bliss_permute(BlissGraph *graph, const unsigned int *perm);
-
-@@ -174,8 +175,9 @@
- * if you want to use the automorphism later, you have to take a copy of it.
- * Do not call bliss_* functions in the hook.
- * If \a stats is non-null, then some search statistics are copied there.
-+ * \return nonzero if successful, zero if insufficient memory or internal error
- */
--void
-+int
- bliss_find_automorphisms(BlissGraph *graph,
- void (*hook)(void *user_param,
- unsigned int N,
-@@ -194,6 +196,7 @@
- * then bliss_permute() with the returned canonical labeling.
- * Note that the computed canonical version may depend on the applied version
- * of bliss.
-+ * Returns NULL if insufficient memory or internal error.
- */
- const unsigned int *
- bliss_find_canonical_labeling(BlissGraph *graph,
-diff -Naur bliss-0.72.orig/defs.cc bliss-0.72/defs.cc
---- bliss-0.72.orig/defs.cc 2013-04-28 14:35:20.582085167 -0600
-+++ bliss-0.72/defs.cc 2013-04-28 14:36:28.792330603 -0600
-@@ -33,7 +33,6 @@
- vfprintf(stderr, fmt, ap);
- fprintf(stderr, "\nAborting!\n");
- va_end(ap);
-- exit(1);
- }
-
- }
-diff -Naur bliss-0.72.orig/graph.cc bliss-0.72/graph.cc
---- bliss-0.72.orig/graph.cc 2013-04-28 14:35:20.582085167 -0600
-+++ bliss-0.72/graph.cc 2013-04-28 14:37:16.162501050 -0600
-@@ -34,7 +34,10 @@
- namespace bliss {
-
- #define _INTERNAL_ERROR() fatal_error("%s:%d: internal error",__FILE__,__LINE__)
--#define _OUT_OF_MEMORY() fatal_error("%s:%d: out of memory",__FILE__,__LINE__)
-+#define _OUT_OF_MEMORY(label) do { \
-+ fatal_error("%s:%d: out of memory",__FILE__,__LINE__); \
-+ goto label; \
-+ } while (0)
-
- /*-------------------------------------------------------------------------
- *
-@@ -279,20 +282,6 @@
- *perm = i;
- }
-
--bool
--AbstractGraph::is_automorphism(unsigned int* const perm)
--{
-- _INTERNAL_ERROR();
-- return false;
--}
--
--bool
--AbstractGraph::is_automorphism(const std::vector<unsigned int>& perm) const
--{
-- _INTERNAL_ERROR();
-- return false;
--}
--
-
-
-
-@@ -608,17 +597,7 @@
- };
-
-
--
--
--typedef struct {
-- unsigned int splitting_element;
-- unsigned int certificate_index;
-- unsigned int subcertificate_length;
-- UintSeqHash eqref_hash;
--} PathInfo;
--
--
--void
-+bool
- AbstractGraph::search(const bool canonical, Stats& stats)
- {
- const unsigned int N = get_nof_vertices();
-@@ -658,7 +637,7 @@
- if(N == 0)
- {
- /* Nothing to do, return... */
-- return;
-+ return true;
- }
-
- /* Initialize the partition ... */
-@@ -696,10 +675,10 @@
- */
- if(first_path_labeling) free(first_path_labeling);
- first_path_labeling = (unsigned int*)calloc(N, sizeof(unsigned int));
-- if(!first_path_labeling) _OUT_OF_MEMORY();
-+ if(!first_path_labeling) _OUT_OF_MEMORY(oom1);
- if(best_path_labeling) free(best_path_labeling);
- best_path_labeling = (unsigned int*)calloc(N, sizeof(unsigned int));
-- if(!best_path_labeling) _OUT_OF_MEMORY();
-+ if(!best_path_labeling) _OUT_OF_MEMORY(oom2);
-
- /*
- * Is the initial partition discrete?
-@@ -710,7 +689,7 @@
- update_labeling(best_path_labeling);
- /* Update statistics */
- stats.nof_leaf_nodes = 1;
-- return;
-+ return true;
- }
-
- /*
-@@ -718,20 +697,39 @@
- */
- if(first_path_labeling_inv) free(first_path_labeling_inv);
- first_path_labeling_inv = (unsigned int*)calloc(N, sizeof(unsigned int));
-- if(!first_path_labeling_inv) _OUT_OF_MEMORY();
-+ if(!first_path_labeling_inv) _OUT_OF_MEMORY(oom3);
- if(best_path_labeling_inv) free(best_path_labeling_inv);
- best_path_labeling_inv = (unsigned int*)calloc(N, sizeof(unsigned int));
-- if(!best_path_labeling_inv) _OUT_OF_MEMORY();
-+ if(!best_path_labeling_inv) _OUT_OF_MEMORY(oom4);
-
- /*
- * Allocate space for the automorphisms
- */
- if(first_path_automorphism) free(first_path_automorphism);
- first_path_automorphism = (unsigned int*)malloc(N * sizeof(unsigned int));
-- if(!first_path_automorphism) _OUT_OF_MEMORY();
-+ if(!first_path_automorphism) _OUT_OF_MEMORY(oom5);
- if(best_path_automorphism) free(best_path_automorphism);
- best_path_automorphism = (unsigned int*)malloc(N * sizeof(unsigned int));
-- if(!best_path_automorphism) _OUT_OF_MEMORY();
-+ if(!best_path_automorphism) {
-+ _OUT_OF_MEMORY(oom6);
-+ oom6:
-+ free(first_path_automorphism);
-+ first_path_automorphism = NULL;
-+ oom5:
-+ free(best_path_labeling_inv);
-+ best_path_labeling_inv = NULL;
-+ oom4:
-+ free(first_path_labeling_inv);
-+ first_path_labeling_inv = NULL;
-+ oom3:
-+ free(best_path_labeling);
-+ best_path_labeling = NULL;
-+ oom2:
-+ free(first_path_labeling);
-+ first_path_labeling = NULL;
-+ oom1:
-+ return false;
-+ }
-
- /*
- * Initialize orbit information so that all vertices are in their own orbits
-@@ -745,7 +743,6 @@
- initialize_certificate();
-
- std::vector<TreeNode> search_stack;
-- std::vector<PathInfo> first_path_info;
- std::vector<PathInfo> best_path_info;
-
- search_stack.clear();
-@@ -974,7 +971,6 @@
- */
- {
- unsigned int next_split_element = UINT_MAX;
-- unsigned int* next_split_element_pos = 0;
- unsigned int* ep = p.elements + cell->first;
- if(current_node.fp_on)
- {
-@@ -985,7 +981,6 @@
- *ep < next_split_element and
- first_path_orbits.is_minimal_representative(*ep)) {
- next_split_element = *ep;
-- next_split_element_pos = ep;
- }
- }
- }
-@@ -1001,7 +996,6 @@
- current_node.long_prune_redundant.find(*ep) ==
- current_node.long_prune_redundant.end())) {
- next_split_element = *ep;
-- next_split_element_pos = ep;
- }
- }
- }
-@@ -1015,7 +1009,6 @@
- current_node.long_prune_redundant.find(*ep) ==
- current_node.long_prune_redundant.end())) {
- next_split_element = *ep;
-- next_split_element_pos = ep;
- }
- }
- }
-@@ -1203,8 +1196,10 @@
-
- #if defined(BLISS_VERIFY_EQUITABLEDNESS)
- /* The new partition should be equitable */
-- if(!is_equitable())
-+ if(!is_equitable()) {
- fatal_error("consistency check failed - partition after refinement is not equitable");
-+ return false;
-+ }
- #endif
-
- /*
-@@ -1366,6 +1361,7 @@
- goto handle_first_path_automorphism;
- /* Should never get here because of CR:FP */
- _INTERNAL_ERROR();
-+ return false;
- }
- }
-
-@@ -1598,8 +1594,10 @@
-
- #if defined(BLISS_VERIFY_AUTOMORPHISMS)
- /* Verify that it really is an automorphism */
-- if(!is_automorphism(best_path_automorphism))
-+ if(!is_automorphism(best_path_automorphism)) {
- fatal_error("Best path automorhism validation check failed");
-+ return false;
-+ }
- #endif
-
- unsigned int gca_level_with_first = 0;
-@@ -1666,6 +1664,7 @@
-
-
- _INTERNAL_ERROR();
-+ return false;
-
-
- handle_first_path_automorphism:
-@@ -1701,8 +1700,10 @@
-
- #if defined(BLISS_VERIFY_AUTOMORPHISMS)
- /* Verify that it really is an automorphism */
-- if(!is_automorphism(first_path_automorphism))
-+ if(!is_automorphism(first_path_automorphism)) {
- fatal_error("First path automorphism validation check failed");
-+ return false;
-+ }
- #endif
-
- if(opt_use_long_prune)
-@@ -1749,12 +1750,13 @@
- /* Release component recursion data in partition */
- if(opt_use_comprec)
- p.cr_free();
-+ return true;
- }
-
-
-
-
--void
-+bool
- AbstractGraph::find_automorphisms(Stats& stats,
- void (*hook)(void *user_param,
- unsigned int n,
-@@ -1764,7 +1766,8 @@
- report_hook = hook;
- report_user_param = user_param;
-
-- search(false, stats);
-+ if (!search(false, stats))
-+ return false;
-
- if(first_path_labeling)
- {
-@@ -1776,6 +1779,7 @@
- free(best_path_labeling);
- best_path_labeling = 0;
- }
-+ return true;
- }
-
-
-@@ -1790,7 +1794,8 @@
- report_hook = hook;
- report_user_param = user_param;
-
-- search(true, stats);
-+ if (!search(true, stats))
-+ return NULL;
-
- return best_path_labeling;
- }
-@@ -3480,15 +3485,17 @@
- * Check whether perm is an automorphism.
- * Slow, mainly for debugging and validation purposes.
- */
--bool
-+int
- Digraph::is_automorphism(unsigned int* const perm)
- {
- std::set<unsigned int, std::less<unsigned int> > edges1;
- std::set<unsigned int, std::less<unsigned int> > edges2;
-
- #if defined(BLISS_CONSISTENCY_CHECKS)
-- if(!is_permutation(get_nof_vertices(), perm))
-+ if(!is_permutation(get_nof_vertices(), perm)) {
- _INTERNAL_ERROR();
-+ return -1;
-+ }
- #endif
-
- for(unsigned int i = 0; i < get_nof_vertices(); i++)
-@@ -3507,7 +3514,7 @@
- ei++)
- edges2.insert(*ei);
- if(!(edges1 == edges2))
-- return false;
-+ return 0;
-
- edges1.clear();
- for(std::vector<unsigned int>::iterator ei = v1.edges_out.begin();
-@@ -3520,10 +3527,10 @@
- ei++)
- edges2.insert(*ei);
- if(!(edges1 == edges2))
-- return false;
-+ return 0;
- }
-
-- return true;
-+ return 1;
- }
-
- bool
-@@ -4330,8 +4337,10 @@
- Graph::permute(const unsigned int* perm) const
- {
- #if defined(BLISS_CONSISTENCY_CHECKS)
-- if(!is_permutation(get_nof_vertices(), perm))
-+ if(!is_permutation(get_nof_vertices(), perm)) {
- _INTERNAL_ERROR();
-+ return NULL;
-+ }
- #endif
-
- Graph* const g = new Graph(get_nof_vertices());
-@@ -5270,15 +5279,17 @@
- *
- *-------------------------------------------------------------------------*/
-
--bool
-+int
- Graph::is_automorphism(unsigned int* const perm)
- {
- std::set<unsigned int, std::less<unsigned int> > edges1;
- std::set<unsigned int, std::less<unsigned int> > edges2;
-
- #if defined(BLISS_CONSISTENCY_CHECKS)
-- if(!is_permutation(get_nof_vertices(), perm))
-+ if(!is_permutation(get_nof_vertices(), perm)) {
- _INTERNAL_ERROR();
-+ return -1;
-+ }
- #endif
-
- for(unsigned int i = 0; i < get_nof_vertices(); i++)
-@@ -5298,10 +5309,10 @@
- edges2.insert(*ei);
-
- if(!(edges1 == edges2))
-- return false;
-+ return 0;
- }
-
-- return true;
-+ return 1;
- }
-
-
-@@ -5444,7 +5455,7 @@
- component.clear();
- component_elements = 0;
- sh_return = 0;
-- unsigned int sh_first = 0;
-+ unsigned int sh_first = 1 << 31;
- unsigned int sh_size = 0;
- unsigned int sh_nuconn = 0;
-
-diff -Naur bliss-0.72.orig/graph.hh bliss-0.72/graph.hh
---- bliss-0.72.orig/graph.hh 2013-04-28 14:35:20.582085167 -0600
-+++ bliss-0.72/graph.hh 2013-04-28 14:37:16.162501050 -0600
-@@ -109,9 +109,12 @@
- unsigned long int get_max_level() const {return max_level;}
- };
-
--
--
--
-+typedef struct {
-+ unsigned int splitting_element;
-+ unsigned int certificate_index;
-+ unsigned int subcertificate_length;
-+ UintSeqHash eqref_hash;
-+} PathInfo;
-
-
- /**
-@@ -270,7 +273,7 @@
- void reset_permutation(unsigned int *perm);
-
- /* Mainly for debugging purposes */
-- virtual bool is_automorphism(unsigned int* const perm);
-+ virtual int is_automorphism(unsigned int* const perm) = 0;
-
- std::vector<unsigned int> certificate_current_path;
- std::vector<unsigned int> certificate_first_path;
-@@ -284,7 +287,11 @@
- virtual Partition::Cell* find_next_cell_to_be_splitted(Partition::Cell *cell) = 0;
-
-
-- void search(const bool canonical, Stats &stats);
-+ /**
-+ * \return true if successful, false if insufficient memory to complete or
-+ * other internal error
-+ */
-+ bool search(const bool canonical, Stats &stats);
-
-
- void (*report_hook)(void *user_param,
-@@ -351,7 +358,7 @@
- */
- unsigned int cr_component_elements;
-
--
-+ std::vector<PathInfo> first_path_info;
-
-
- public:
-@@ -362,7 +369,7 @@
- * Check whether \a perm is an automorphism of this graph.
- * Unoptimized, mainly for debugging purposes.
- */
-- virtual bool is_automorphism(const std::vector<unsigned int>& perm) const;
-+ virtual bool is_automorphism(const std::vector<unsigned int>& perm) const = 0;
-
-
-
-@@ -427,8 +434,10 @@
- * if you want to use the automorphism later, you have to take a copy of it.
- * Do not call any member functions in the hook.
- * The search statistics are copied in \a stats.
-+ * \return true if successful, false if insufficient memory to search or
-+ * other internal error.
- */
-- void find_automorphisms(Stats& stats,
-+ bool find_automorphisms(Stats& stats,
- void (*hook)(void* user_param,
- unsigned int n,
- const unsigned int* aut),
-@@ -448,6 +457,8 @@
- * Note that the computed canonical version may depend on the applied version
- * of bliss as well as on some other options (for instance, the splitting
- * heuristic selected with bliss::Graph::set_splitting_heuristic()).
-+ * This function returns NULL if there is insufficient memory, or another
-+ * internal error occurs.
- */
- const unsigned int* canonical_form(Stats& stats,
- void (*hook)(void* user_param,
-@@ -500,6 +511,10 @@
- opt_use_long_prune = active;
- }
-
-+ /**
-+ * Get an information vector about the first path.
-+ */
-+ std::vector<PathInfo> get_first_path_info() { return first_path_info; }
- };
-
-
-@@ -615,7 +630,7 @@
-
- void initialize_certificate();
-
-- bool is_automorphism(unsigned int* const perm);
-+ int is_automorphism(unsigned int* const perm);
-
-
- bool nucr_find_first_component(const unsigned int level);
-@@ -856,7 +871,7 @@
-
- void initialize_certificate();
-
-- bool is_automorphism(unsigned int* const perm);
-+ int is_automorphism(unsigned int* const perm);
-
- void sort_edges();
-
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-libs/bliss/files/, sci-libs/bliss/
@ 2017-01-01 18:17 Christoph Junghans
0 siblings, 0 replies; 4+ messages in thread
From: Christoph Junghans @ 2017-01-01 18:17 UTC (permalink / raw
To: gentoo-commits
commit: 561d59645a2e23179b1c1c13e9a262908a1157f1
Author: Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 1 18:14:44 2017 +0000
Commit: Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Sun Jan 1 18:17:10 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=561d5964
sci-libs/bliss: version bump
Package-Manager: portage-2.3.0
sci-libs/bliss/Manifest | 1 +
sci-libs/bliss/bliss-0.73.ebuild | 51 +++
sci-libs/bliss/files/bliss-0.73-autotools.patch | 99 +++++
sci-libs/bliss/files/bliss-0.73-error.patch | 471 ++++++++++++++++++++++++
sci-libs/bliss/files/bliss-0.73-rehn.patch | 74 ++++
sci-libs/bliss/files/bliss-0.73.1.in | 55 +++
6 files changed, 751 insertions(+)
diff --git a/sci-libs/bliss/Manifest b/sci-libs/bliss/Manifest
index be3eecb..9cd37a6 100644
--- a/sci-libs/bliss/Manifest
+++ b/sci-libs/bliss/Manifest
@@ -1 +1,2 @@
DIST bliss-0.72.zip 90970 SHA256 528d192b1e30722fc60f5f12c9d6c12b374d838198ae7f18fb41bedabf735ed3 SHA512 a09b3cea26e3ff5f5733f10bfaadaf6fb5a3f443e1cc306fad16af2f7b4cd97c90652315f911a324d6d71426a3d098cd5c7e5721f69c599fe2e0d6d34caa0ef5 WHIRLPOOL afbc41c04e843d383a2da8d5e26ec2882c847e8e5f1e71c05f884396fcc79eab764df628523336b88e0c6ef4fbf073a52870e2c68ded428002d9391894cb53d6
+DIST bliss-0.73.zip 94108 SHA256 f57bf32804140cad58b1240b804e0dbd68f7e6bf67eba8e0c0fa3a62fd7f0f84 SHA512 30f505945c577d8bcb265a349f5bc9d4dcd96555fa3add285199cdd95ea2710f04409008ff06432daffab62c132e884845eae7f823191407906202862509e05d WHIRLPOOL 08402453515e092604105f17f5889d252c0207fa31a1125e87e04c4792cbeb77b7a585a134fd2b3108e8620bbd643cd8b7826dee8a56cf47908a922298b70ad1
diff --git a/sci-libs/bliss/bliss-0.73.ebuild b/sci-libs/bliss/bliss-0.73.ebuild
new file mode 100644
index 00000000..cf5e839
--- /dev/null
+++ b/sci-libs/bliss/bliss-0.73.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools
+
+SRC_URI="http://www.tcs.hut.fi/Software/${PN}/${P}.zip"
+DESCRIPTION="A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs"
+HOMEPAGE="http://www.tcs.hut.fi/Software/bliss/index.shtml"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc gmp static-libs"
+
+RDEPEND="gmp? ( dev-libs/gmp:0= )"
+
+DEPEND="${RDEPEND}
+ doc? ( app-doc/doxygen )"
+
+#patches from http://pkgs.fedoraproject.org/cgit/rpms/bliss.git/tree/
+PATCHES=(
+ "${FILESDIR}/${P}-error.patch"
+ "${FILESDIR}/${P}-rehn.patch"
+ "${FILESDIR}/${P}-autotools.patch"
+)
+
+src_prepare() {
+ cp "${FILESDIR}/${P}.1.in" "${PN}.1.in" || die
+ rm Makefile || die
+ default
+ eautoreconf
+}
+
+src_configure() {
+ econf $(use_with gmp) $(use_enable static-libs static)
+}
+
+src_compile() {
+ emake all $(usex doc html "")
+}
+
+src_install() {
+ use doc && HTML_DOCS=( "${S}"/html/. )
+ default
+
+ #comes with pkg-config file
+ find "${ED}" -name '*.la' -delete || die
+}
diff --git a/sci-libs/bliss/files/bliss-0.73-autotools.patch b/sci-libs/bliss/files/bliss-0.73-autotools.patch
new file mode 100644
index 00000000..1fe209e
--- /dev/null
+++ b/sci-libs/bliss/files/bliss-0.73-autotools.patch
@@ -0,0 +1,99 @@
+Replace simple Makefile by autotools
+- allow shared library
+- parallel build
+- added pkg-config support
+
+Author: Christoph Junghans <junghans@gentoo.org>
+
+diff -Naur bliss-0.72-fedora/config/.dummy bliss-0.72/config/.dummy
+--- bliss-0.72-fedora/config/.dummy 1969-12-31 17:00:00.000000000 -0700
++++ bliss-0.72/config/.dummy 2013-04-28 14:43:06.143760368 -0600
+@@ -0,0 +1 @@
++Dummy file to make patch create config dir, which is needed for autotools
+diff -Naur bliss-0.72-fedora/configure.ac bliss-0.72/configure.ac
+--- bliss-0.72-fedora/configure.ac 1969-12-31 17:00:00.000000000 -0700
++++ bliss-0.72/configure.ac 2013-04-28 14:40:42.283242722 -0600
+@@ -0,0 +1,32 @@
++AC_PREREQ([2.65])
++AC_INIT([bliss], [0.73], [Tommi.Junttil@kk.fi])
++
++AC_CONFIG_AUX_DIR(config)
++AC_CONFIG_MACRO_DIR(config)
++
++AM_INIT_AUTOMAKE([1.8 foreign])
++
++SHARED_VERSION_INFO="1:0:0"
++AC_SUBST(SHARED_VERSION_INFO)
++
++# Checks for programs.
++AC_PROG_CXX
++
++LT_INIT
++# Checks for libraries.
++AC_ARG_WITH([gmp],
++ [AS_HELP_STRING([--with-gmp], [enable support for GNU Multiple Precision Arithmetic Library @<:@default=check@:>@])],
++ [], [with_readline=no])
++AS_IF([test "x$with_readline" != xno],
++ [AC_CHECK_HEADERS([gmp.h],,AC_MSG_ERROR([Cannot find gmp.h header]))
++ AC_CHECK_LIB([gmp],_init,,AC_MSG_ERROR([Cannot find gmp library]))
++ AC_SUBST([GMP],[-lgmp])
++ [CPPFLAGS="$CPPFLAGS -DBLISS_USE_GMP"]])
++
++AC_CHECK_PROG(DOXYGEN,doxygen,doxygen,no)
++AM_CONDITIONAL(HAVE_DOXYGEN,[test .$DOXYGEN != .no])
++
++AC_CONFIG_FILES([Makefile])
++AC_CONFIG_FILES([bliss.pc])
++AC_CONFIG_FILES([bliss.1])
++AC_OUTPUT
+diff -Naur bliss-0.72-fedora/bliss.pc.in bliss-0.72/bliss.pc.in
+--- bliss-0.72-fedora/bliss.pc.in 1969-12-31 17:00:00.000000000 -0700
++++ bliss-0.72/bliss.pc.in 2013-04-28 14:40:54.223285686 -0600
+@@ -0,0 +1,13 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: bliss
++Description: Library for Computing Automorphism Groups and Canonical Labelings of Graphs
++URL: http://www.tcs.hut.fi/Software/bliss/index.shtml
++Version: @VERSION@
++Requires:
++Libs: -L${libdir} -lbliss @GMP@
++Libs.private: -lm
++Cflags: -I${includedir}
+diff -Naur bliss-0.72-fedora/Makefile.am bliss-0.72/Makefile.am
+--- bliss-0.72-fedora/Makefile.am 1969-12-31 17:00:00.000000000 -0700
++++ bliss-0.72/Makefile.am 2013-04-28 14:47:26.944698789 -0600
+@@ -0,0 +1,30 @@
++ACLOCAL_AMFLAGS = -I config
++
++lib_LTLIBRARIES = libbliss.la
++
++libbliss_la_LDFLAGS = -no-undefined -version-info @SHARED_VERSION_INFO@
++libbliss_la_SOURCES = \
++ defs.cc graph.cc partition.cc orbit.cc uintseqhash.cc heap.cc \
++ timer.cc utils.cc bliss_C.cc
++
++pkginclude_HEADERS = \
++ bignum.hh bliss_C.h defs.hh graph.hh heap.hh kqueue.hh kstack.hh \
++ orbit.hh partition.hh timer.hh uintseqhash.hh utils.hh
++
++bin_PROGRAMS = bliss
++bliss_SOURCES = bliss.cc
++bliss_LDADD = libbliss.la
++dist_man1_MANS = bliss.1
++
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = bliss.pc
++
++html-local: Doxyfile
++if HAVE_DOXYGEN
++ $(DOXYGEN) $(srcdir)/Doxyfile
++else
++ @echo "doxygen was not found, please re-run configure"
++endif
++
++clean-local:
++ -rm -rf html
diff --git a/sci-libs/bliss/files/bliss-0.73-error.patch b/sci-libs/bliss/files/bliss-0.73-error.patch
new file mode 100644
index 00000000..cd0f545
--- /dev/null
+++ b/sci-libs/bliss/files/bliss-0.73-error.patch
@@ -0,0 +1,471 @@
+--- ./bliss.cc.orig 2015-09-01 10:23:10.000000000 -0600
++++ ./bliss.cc 2015-09-04 15:04:09.946602735 -0600
+@@ -276,13 +276,16 @@ main(const int argc, const char** argv)
+ if(opt_canonize == false)
+ {
+ /* No canonical labeling, only automorphism group */
+- g->find_automorphisms(stats, &report_aut, stdout);
++ if (!g->find_automorphisms(stats, &report_aut, stdout))
++ exit(1);
+ }
+ else
+ {
+ /* Canonical labeling and automorphism group */
+ const unsigned int* cl = g->canonical_form(stats, &report_aut, stdout);
+
++ if (!cl)
++ exit(1);
+ fprintf(stdout, "Canonical labeling: ");
+ bliss::print_permutation(stdout, g->get_nof_vertices(), cl, 1);
+ fprintf(stdout, "\n");
+@@ -290,6 +293,8 @@ main(const int argc, const char** argv)
+ if(opt_output_can_file)
+ {
+ bliss::AbstractGraph* cf = g->permute(cl);
++ if (!cf)
++ exit(1);
+ FILE* const fp = fopen(opt_output_can_file, "w");
+ if(!fp)
+ _fatal("Cannot open '%s' for outputting the canonical form, aborting", opt_output_can_file);
+--- ./bliss_C.cc.orig 2015-09-01 10:23:10.000000000 -0600
++++ ./bliss_C.cc 2015-09-04 15:04:09.945602814 -0600
+@@ -131,7 +131,7 @@ BlissGraph *bliss_permute(BlissGraph *gr
+ }
+
+ extern "C"
+-void
++int
+ bliss_find_automorphisms(BlissGraph *graph,
+ void (*hook)(void *user_param,
+ unsigned int n,
+@@ -142,7 +142,8 @@ bliss_find_automorphisms(BlissGraph *gra
+ bliss::Stats s;
+ assert(graph);
+ assert(graph->g);
+- graph->g->find_automorphisms(s, hook, hook_user_param);
++ if (!graph->g->find_automorphisms(s, hook, hook_user_param))
++ return 0;
+
+ if(stats)
+ {
+@@ -154,6 +155,7 @@ bliss_find_automorphisms(BlissGraph *gra
+ stats->nof_generators = s.get_nof_generators();
+ stats->max_level = s.get_max_level();
+ }
++ return 1;
+ }
+
+
+@@ -173,7 +175,7 @@ bliss_find_canonical_labeling(BlissGraph
+
+ canonical_labeling = graph->g->canonical_form(s, hook, hook_user_param);
+
+- if(stats)
++ if(canonical_labeling && stats)
+ {
+ stats->group_size_approx = s.get_group_size_approx();
+ stats->nof_nodes = s.get_nof_nodes();
+--- ./bliss_C.h.orig 2015-09-01 10:23:10.000000000 -0600
++++ ./bliss_C.h 2015-09-04 15:04:09.947602656 -0600
+@@ -156,6 +156,7 @@ unsigned int bliss_hash(BlissGraph *grap
+ * The argument \a perm should be an array of
+ * N=bliss::bliss_get_nof_vertices(\a graph) elements describing
+ * a bijection on {0,...,N-1}.
++ * Returns NULL if insufficient memory or internal error.
+ */
+ BlissGraph *bliss_permute(BlissGraph *graph, const unsigned int *perm);
+
+@@ -174,8 +175,9 @@ BlissGraph *bliss_permute(BlissGraph *gr
+ * if you want to use the automorphism later, you have to take a copy of it.
+ * Do not call bliss_* functions in the hook.
+ * If \a stats is non-null, then some search statistics are copied there.
++ * \return nonzero if successful, zero if insufficient memory or internal error
+ */
+-void
++int
+ bliss_find_automorphisms(BlissGraph *graph,
+ void (*hook)(void *user_param,
+ unsigned int N,
+@@ -194,6 +196,7 @@ bliss_find_automorphisms(BlissGraph *gra
+ * then bliss_permute() with the returned canonical labeling.
+ * Note that the computed canonical version may depend on the applied version
+ * of bliss.
++ * Returns NULL if insufficient memory or internal error.
+ */
+ const unsigned int *
+ bliss_find_canonical_labeling(BlissGraph *graph,
+--- ./defs.cc.orig 2015-09-01 10:23:12.000000000 -0600
++++ ./defs.cc 2015-09-04 15:04:09.947602656 -0600
+@@ -32,7 +32,6 @@ fatal_error(const char* fmt, ...)
+ vfprintf(stderr, fmt, ap);
+ fprintf(stderr, "\nAborting!\n");
+ va_end(ap);
+- exit(1);
+ }
+
+ }
+--- ./graph.cc.orig 2015-09-01 10:23:10.000000000 -0600
++++ ./graph.cc 2015-09-04 15:04:09.927604245 -0600
+@@ -34,7 +34,10 @@
+ namespace bliss {
+
+ #define _INTERNAL_ERROR() fatal_error("%s:%d: internal error",__FILE__,__LINE__)
+-#define _OUT_OF_MEMORY() fatal_error("%s:%d: out of memory",__FILE__,__LINE__)
++#define _OUT_OF_MEMORY(label) do { \
++ fatal_error("%s:%d: out of memory",__FILE__,__LINE__); \
++ goto label; \
++ } while (0)
+
+ /*-------------------------------------------------------------------------
+ *
+@@ -279,20 +282,6 @@ AbstractGraph::reset_permutation(unsigne
+ *perm = i;
+ }
+
+-bool
+-AbstractGraph::is_automorphism(unsigned int* const perm)
+-{
+- _INTERNAL_ERROR();
+- return false;
+-}
+-
+-bool
+-AbstractGraph::is_automorphism(const std::vector<unsigned int>& perm) const
+-{
+- _INTERNAL_ERROR();
+- return false;
+-}
+-
+
+
+
+@@ -618,7 +607,7 @@ typedef struct {
+ } PathInfo;
+
+
+-void
++bool
+ AbstractGraph::search(const bool canonical, Stats& stats)
+ {
+ const unsigned int N = get_nof_vertices();
+@@ -658,7 +647,7 @@ AbstractGraph::search(const bool canonic
+ if(N == 0)
+ {
+ /* Nothing to do, return... */
+- return;
++ return true;
+ }
+
+ /* Initialize the partition ... */
+@@ -696,10 +685,10 @@ AbstractGraph::search(const bool canonic
+ */
+ if(first_path_labeling) free(first_path_labeling);
+ first_path_labeling = (unsigned int*)calloc(N, sizeof(unsigned int));
+- if(!first_path_labeling) _OUT_OF_MEMORY();
++ if(!first_path_labeling) _OUT_OF_MEMORY(oom1);
+ if(best_path_labeling) free(best_path_labeling);
+ best_path_labeling = (unsigned int*)calloc(N, sizeof(unsigned int));
+- if(!best_path_labeling) _OUT_OF_MEMORY();
++ if(!best_path_labeling) _OUT_OF_MEMORY(oom2);
+
+ /*
+ * Is the initial partition discrete?
+@@ -710,7 +699,7 @@ AbstractGraph::search(const bool canonic
+ update_labeling(best_path_labeling);
+ /* Update statistics */
+ stats.nof_leaf_nodes = 1;
+- return;
++ return true;
+ }
+
+ /*
+@@ -718,20 +707,39 @@ AbstractGraph::search(const bool canonic
+ */
+ if(first_path_labeling_inv) free(first_path_labeling_inv);
+ first_path_labeling_inv = (unsigned int*)calloc(N, sizeof(unsigned int));
+- if(!first_path_labeling_inv) _OUT_OF_MEMORY();
++ if(!first_path_labeling_inv) _OUT_OF_MEMORY(oom3);
+ if(best_path_labeling_inv) free(best_path_labeling_inv);
+ best_path_labeling_inv = (unsigned int*)calloc(N, sizeof(unsigned int));
+- if(!best_path_labeling_inv) _OUT_OF_MEMORY();
++ if(!best_path_labeling_inv) _OUT_OF_MEMORY(oom4);
+
+ /*
+ * Allocate space for the automorphisms
+ */
+ if(first_path_automorphism) free(first_path_automorphism);
+ first_path_automorphism = (unsigned int*)malloc(N * sizeof(unsigned int));
+- if(!first_path_automorphism) _OUT_OF_MEMORY();
++ if(!first_path_automorphism) _OUT_OF_MEMORY(oom5);
+ if(best_path_automorphism) free(best_path_automorphism);
+ best_path_automorphism = (unsigned int*)malloc(N * sizeof(unsigned int));
+- if(!best_path_automorphism) _OUT_OF_MEMORY();
++ if(!best_path_automorphism) {
++ _OUT_OF_MEMORY(oom6);
++ oom6:
++ free(first_path_automorphism);
++ first_path_automorphism = NULL;
++ oom5:
++ free(best_path_labeling_inv);
++ best_path_labeling_inv = NULL;
++ oom4:
++ free(first_path_labeling_inv);
++ first_path_labeling_inv = NULL;
++ oom3:
++ free(best_path_labeling);
++ best_path_labeling = NULL;
++ oom2:
++ free(first_path_labeling);
++ first_path_labeling = NULL;
++ oom1:
++ return false;
++ }
+
+ /*
+ * Initialize orbit information so that all vertices are in their own orbits
+@@ -1203,8 +1211,10 @@ AbstractGraph::search(const bool canonic
+
+ #if defined(BLISS_VERIFY_EQUITABLEDNESS)
+ /* The new partition should be equitable */
+- if(!is_equitable())
++ if(!is_equitable()) {
+ fatal_error("consistency check failed - partition after refinement is not equitable");
++ return false;
++ }
+ #endif
+
+ /*
+@@ -1596,8 +1606,10 @@ AbstractGraph::search(const bool canonic
+
+ #if defined(BLISS_VERIFY_AUTOMORPHISMS)
+ /* Verify that it really is an automorphism */
+- if(!is_automorphism(best_path_automorphism))
++ if(!is_automorphism(best_path_automorphism)) {
+ fatal_error("Best path automorhism validation check failed");
++ return false;
++ }
+ #endif
+
+ unsigned int gca_level_with_first = 0;
+@@ -1664,6 +1676,7 @@ AbstractGraph::search(const bool canonic
+
+
+ _INTERNAL_ERROR();
++ return false;
+
+
+ handle_first_path_automorphism:
+@@ -1699,8 +1712,10 @@ AbstractGraph::search(const bool canonic
+
+ #if defined(BLISS_VERIFY_AUTOMORPHISMS)
+ /* Verify that it really is an automorphism */
+- if(!is_automorphism(first_path_automorphism))
++ if(!is_automorphism(first_path_automorphism)) {
+ fatal_error("First path automorphism validation check failed");
++ return false;
++ }
+ #endif
+
+ if(opt_use_long_prune)
+@@ -1747,12 +1762,13 @@ AbstractGraph::search(const bool canonic
+ /* Release component recursion data in partition */
+ if(opt_use_comprec)
+ p.cr_free();
++ return true;
+ }
+
+
+
+
+-void
++bool
+ AbstractGraph::find_automorphisms(Stats& stats,
+ void (*hook)(void *user_param,
+ unsigned int n,
+@@ -1762,7 +1778,8 @@ AbstractGraph::find_automorphisms(Stats&
+ report_hook = hook;
+ report_user_param = user_param;
+
+- search(false, stats);
++ if (!search(false, stats))
++ return false;
+
+ if(first_path_labeling)
+ {
+@@ -1774,6 +1791,7 @@ AbstractGraph::find_automorphisms(Stats&
+ free(best_path_labeling);
+ best_path_labeling = 0;
+ }
++ return true;
+ }
+
+
+@@ -1788,7 +1806,8 @@ AbstractGraph::canonical_form(Stats& sta
+ report_hook = hook;
+ report_user_param = user_param;
+
+- search(true, stats);
++ if (!search(true, stats))
++ return NULL;
+
+ return best_path_labeling;
+ }
+@@ -3479,15 +3498,17 @@ Digraph::initialize_certificate()
+ * Check whether perm is an automorphism.
+ * Slow, mainly for debugging and validation purposes.
+ */
+-bool
++int
+ Digraph::is_automorphism(unsigned int* const perm)
+ {
+ std::set<unsigned int, std::less<unsigned int> > edges1;
+ std::set<unsigned int, std::less<unsigned int> > edges2;
+
+ #if defined(BLISS_CONSISTENCY_CHECKS)
+- if(!is_permutation(get_nof_vertices(), perm))
++ if(!is_permutation(get_nof_vertices(), perm)) {
+ _INTERNAL_ERROR();
++ return -1;
++ }
+ #endif
+
+ for(unsigned int i = 0; i < get_nof_vertices(); i++)
+@@ -3506,7 +3527,7 @@ Digraph::is_automorphism(unsigned int* c
+ ei++)
+ edges2.insert(*ei);
+ if(!(edges1 == edges2))
+- return false;
++ return 0;
+
+ edges1.clear();
+ for(std::vector<unsigned int>::iterator ei = v1.edges_out.begin();
+@@ -3519,10 +3540,10 @@ Digraph::is_automorphism(unsigned int* c
+ ei++)
+ edges2.insert(*ei);
+ if(!(edges1 == edges2))
+- return false;
++ return 0;
+ }
+
+- return true;
++ return 1;
+ }
+
+ bool
+@@ -4337,8 +4358,10 @@ Graph*
+ Graph::permute(const unsigned int* perm) const
+ {
+ #if defined(BLISS_CONSISTENCY_CHECKS)
+- if(!is_permutation(get_nof_vertices(), perm))
++ if(!is_permutation(get_nof_vertices(), perm)) {
+ _INTERNAL_ERROR();
++ return NULL;
++ }
+ #endif
+
+ Graph* const g = new Graph(get_nof_vertices());
+@@ -5278,15 +5301,17 @@ Graph::initialize_certificate()
+ *
+ *-------------------------------------------------------------------------*/
+
+-bool
++int
+ Graph::is_automorphism(unsigned int* const perm)
+ {
+ std::set<unsigned int, std::less<unsigned int> > edges1;
+ std::set<unsigned int, std::less<unsigned int> > edges2;
+
+ #if defined(BLISS_CONSISTENCY_CHECKS)
+- if(!is_permutation(get_nof_vertices(), perm))
++ if(!is_permutation(get_nof_vertices(), perm)) {
+ _INTERNAL_ERROR();
++ return -1;
++ }
+ #endif
+
+ for(unsigned int i = 0; i < get_nof_vertices(); i++)
+@@ -5306,10 +5331,10 @@ Graph::is_automorphism(unsigned int* con
+ edges2.insert(*ei);
+
+ if(!(edges1 == edges2))
+- return false;
++ return 0;
+ }
+
+- return true;
++ return 1;
+ }
+
+
+--- ./graph.hh.orig 2015-09-01 10:23:10.000000000 -0600
++++ ./graph.hh 2015-09-04 15:09:17.261182632 -0600
+@@ -159,7 +159,7 @@ public:
+ * Check whether \a perm is an automorphism of this graph.
+ * Unoptimized, mainly for debugging purposes.
+ */
+- virtual bool is_automorphism(const std::vector<unsigned int>& perm) const;
++ virtual bool is_automorphism(const std::vector<unsigned int>& perm) const = 0;
+
+
+ /** Activate/deactivate failure recording.
+@@ -211,8 +211,10 @@ public:
+ * if you want to use the automorphism later, you have to take a copy of it.
+ * Do not call any member functions in the hook.
+ * The search statistics are copied in \a stats.
++ * \return true if successful, false if insufficient memory to search or
++ * other internal error.
+ */
+- void find_automorphisms(Stats& stats,
++ bool find_automorphisms(Stats& stats,
+ void (*hook)(void* user_param,
+ unsigned int n,
+ const unsigned int* aut),
+@@ -232,6 +234,8 @@ public:
+ * Note that the computed canonical version may depend on the applied version
+ * of bliss as well as on some other options (for instance, the splitting
+ * heuristic selected with bliss::Graph::set_splitting_heuristic()).
++ * This function returns NULL if there is insufficient memory, or another
++ * internal error occurs.
+ */
+ const unsigned int* canonical_form(Stats& stats,
+ void (*hook)(void* user_param,
+@@ -436,7 +440,7 @@ protected:
+ void reset_permutation(unsigned int *perm);
+
+ /* Mainly for debugging purposes */
+- virtual bool is_automorphism(unsigned int* const perm);
++ virtual int is_automorphism(unsigned int* const perm) = 0;
+
+ std::vector<unsigned int> certificate_current_path;
+ std::vector<unsigned int> certificate_first_path;
+@@ -450,7 +454,11 @@ protected:
+ virtual Partition::Cell* find_next_cell_to_be_splitted(Partition::Cell *cell) = 0;
+
+
+- void search(const bool canonical, Stats &stats);
++ /**
++ * \return true if successful, false if insufficient memory to complete or
++ * other internal error
++ */
++ bool search(const bool canonical, Stats &stats);
+
+
+ void (*report_hook)(void *user_param,
+@@ -634,7 +642,7 @@ protected:
+
+ void initialize_certificate();
+
+- bool is_automorphism(unsigned int* const perm);
++ int is_automorphism(unsigned int* const perm);
+
+
+ bool nucr_find_first_component(const unsigned int level);
+@@ -875,7 +883,7 @@ protected:
+
+ void initialize_certificate();
+
+- bool is_automorphism(unsigned int* const perm);
++ int is_automorphism(unsigned int* const perm);
+
+ void sort_edges();
+
diff --git a/sci-libs/bliss/files/bliss-0.73-rehn.patch b/sci-libs/bliss/files/bliss-0.73-rehn.patch
new file mode 100644
index 00000000..f37eedb
--- /dev/null
+++ b/sci-libs/bliss/files/bliss-0.73-rehn.patch
@@ -0,0 +1,74 @@
+--- ./graph.cc.orig 2015-09-04 15:04:09.927604245 -0600
++++ ./graph.cc 2015-09-04 15:09:46.999819514 -0600
+@@ -597,16 +597,6 @@ public:
+ };
+
+
+-
+-
+-typedef struct {
+- unsigned int splitting_element;
+- unsigned int certificate_index;
+- unsigned int subcertificate_length;
+- UintSeqHash eqref_hash;
+-} PathInfo;
+-
+-
+ bool
+ AbstractGraph::search(const bool canonical, Stats& stats)
+ {
+@@ -753,7 +743,6 @@ AbstractGraph::search(const bool canonic
+ initialize_certificate();
+
+ std::vector<TreeNode> search_stack;
+- std::vector<PathInfo> first_path_info;
+ std::vector<PathInfo> best_path_info;
+
+ search_stack.clear();
+@@ -5477,7 +5466,7 @@ Graph::nucr_find_first_component(const u
+ component.clear();
+ component_elements = 0;
+ sh_return = 0;
+- unsigned int sh_first = 0;
++ unsigned int sh_first = 1 << 31;
+ unsigned int sh_size = 0;
+ unsigned int sh_nuconn = 0;
+
+--- ./graph.hh.orig 2015-09-04 15:09:17.261182632 -0600
++++ ./graph.hh 2015-09-04 15:09:47.001819355 -0600
+@@ -109,9 +109,12 @@ public:
+ unsigned long int get_max_level() const {return max_level;}
+ };
+
+-
+-
+-
++typedef struct {
++ unsigned int splitting_element;
++ unsigned int certificate_index;
++ unsigned int subcertificate_length;
++ UintSeqHash eqref_hash;
++} PathInfo;
+
+
+ /**
+@@ -524,7 +527,7 @@ protected:
+ */
+ unsigned int cr_component_elements;
+
+-
++ std::vector<PathInfo> first_path_info;
+
+
+ };
+@@ -756,6 +759,10 @@ public:
+ void set_splitting_heuristic(const SplittingHeuristic shs) {sh = shs; }
+
+
++ /**
++ * Get an information vector about the first path.
++ */
++ std::vector<PathInfo> get_first_path_info() { return first_path_info; }
+ };
+
+
diff --git a/sci-libs/bliss/files/bliss-0.73.1.in b/sci-libs/bliss/files/bliss-0.73.1.in
new file mode 100644
index 00000000..f652c3d
--- /dev/null
+++ b/sci-libs/bliss/files/bliss-0.73.1.in
@@ -0,0 +1,55 @@
+.TH "BLISS" "1" "@VERSION@" "Tommi Junttila & Petteri Kaski" "User Commands"
+.SH "NAME"
+bliss \- Compute automorphism groups and canonical labelings of graphs
+.SH "SYNOPSIS"
+.B bliss
+[\fIOPTIONS\fR] [<\fIGRAPH FILE\fR>]
+.SH "DESCRIPTION"
+.PP
+Bliss is an open source tool for computing automorphism groups and
+canonical forms of graphs. The graphs are specified in DIMACS format.
+.TP
+\fB\-directed\fR
+the input graph is directed
+.TP
+\fB\-can\fR
+compute canonical form
+.TP
+\fB\-ocan\fR=\fIf\fR
+compute canonical form and output it in file \fIf\fR
+.TP
+\fB\-v\fR=\fIN\fR
+set verbosity level to N [N >= 0, default: 1]
+.TP
+\fB\-sh\fR=\fIX\fR
+select splitting heuristics, where X is:
+.TS
+tab(;);
+R L.
+f;first non-singleton cell
+fl;first largest non-singleton cell
+fs;first smallest non-singleton cell
+fm;first maximally non-trivially connected non-singleton cell
+flm;first largest maximally non-trivially connected
+;non-singleton cell
+fsm;first smallest maximally non-trivially connected
+;non-singleton cell (default)
+.TE
+.TP
+\fB\-fr\fR=\fIX\fR
+use failure recording? [X=y/n, default: y]
+.TP
+\fB\-cr\fR=\fIX\fR
+use component recursion? [X=y/n, default: y]
+.TP
+\fB\-version\fR
+print the version number and exit
+.TP
+\fB\-help\fR
+print this help and exit
+.SH "AUTHORS"
+Bliss was written by Tommi Junttila <Tommi.Junttila@tkk.fi> and
+Petteri Kaski <petteri.kaski@aalto.fi>.
+.PP
+This man page was written by Jerry James <loganjerry@gmail.com>.
+It is distributed under the same terms as bliss.
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-libs/bliss/files/, sci-libs/bliss/
@ 2020-07-10 16:44 Christoph Junghans
0 siblings, 0 replies; 4+ messages in thread
From: Christoph Junghans @ 2020-07-10 16:44 UTC (permalink / raw
To: gentoo-commits
commit: 0ba92a30fc30e69af6567c45be5ef43c9382a951
Author: Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 10 16:42:25 2020 +0000
Commit: Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Fri Jul 10 16:43:22 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0ba92a30
sci-libs/bliss: fix clang build (bug #731930)
Closes: https://bugs.gentoo.org/731930
Package-Manager: Portage-2.3.99, Repoman-2.3.23
Signed-off-by: Christoph Junghans <junghans <AT> gentoo.org>
sci-libs/bliss/bliss-0.73-r2.ebuild | 49 +++++++++++++++++++++++++++++
sci-libs/bliss/files/bliss-0.73-clang.patch | 11 +++++++
sci-libs/bliss/metadata.xml | 4 ---
3 files changed, 60 insertions(+), 4 deletions(-)
diff --git a/sci-libs/bliss/bliss-0.73-r2.ebuild b/sci-libs/bliss/bliss-0.73-r2.ebuild
new file mode 100644
index 00000000000..9293ac0a67a
--- /dev/null
+++ b/sci-libs/bliss/bliss-0.73-r2.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit autotools
+
+SRC_URI="http://www.tcs.hut.fi/Software/${PN}/${P}.zip"
+DESCRIPTION="Compute Automorphism Groups and Canonical Labelings of Graphs"
+HOMEPAGE="http://www.tcs.hut.fi/Software/bliss/"
+
+LICENSE="LGPL-3"
+SLOT="0/1"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc gmp static-libs"
+
+RDEPEND="gmp? ( dev-libs/gmp:0= )"
+DEPEND="${RDEPEND}
+ app-arch/unzip
+ doc? ( app-doc/doxygen )"
+
+#patches from http://pkgs.fedoraproject.org/cgit/rpms/bliss.git/tree/
+PATCHES=(
+ "${FILESDIR}"/${P}-error.patch
+ "${FILESDIR}"/${P}-rehn.patch
+ "${FILESDIR}"/${P}-clang.patch
+ "${FILESDIR}"/${P}-autotools.patch
+)
+
+src_prepare() {
+ default
+ cp "${FILESDIR}/${P}.1.in" "${PN}.1.in" || die
+ rm Makefile || die
+ eautoreconf
+}
+
+src_configure() {
+ econf $(use_with gmp) $(use_enable static-libs static)
+}
+
+src_compile() {
+ emake all $(usex doc html "")
+}
+
+src_install() {
+ default
+ use static-libs || find "${ED}" -name '*.la' -delete
+ use doc && dodoc -r html
+}
diff --git a/sci-libs/bliss/files/bliss-0.73-clang.patch b/sci-libs/bliss/files/bliss-0.73-clang.patch
new file mode 100644
index 00000000000..8a2e4bb6ca4
--- /dev/null
+++ b/sci-libs/bliss/files/bliss-0.73-clang.patch
@@ -0,0 +1,11 @@
+--- ./bliss.cc.orig 2020-07-10 10:34:44.946000000 -0600
++++ ./bliss.cc 2020-07-10 10:35:36.076000000 -0600
+@@ -59,7 +59,7 @@
+ else program_name = argv0;
+ if(!program_name or *program_name == 0) program_name = "bliss";
+
+- fprintf(fp, "bliss version %s (compiled "__DATE__")\n", bliss::version);
++ fprintf(fp, "bliss version %s (compiled %s)\n", bliss::version, __DATE__);
+ fprintf(fp, "Copyright 2003-2015 Tommi Junttila\n");
+ fprintf(fp,
+ "\n"
diff --git a/sci-libs/bliss/metadata.xml b/sci-libs/bliss/metadata.xml
index 0668c1ada0d..9b3cd6685a1 100644
--- a/sci-libs/bliss/metadata.xml
+++ b/sci-libs/bliss/metadata.xml
@@ -1,10 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="person">
- <email>junghans@gentoo.org</email>
- <name>Christoph Junghans</name>
- </maintainer>
<maintainer type="project">
<email>sci@gentoo.org</email>
<name>Gentoo Science Project</name>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-libs/bliss/files/, sci-libs/bliss/
@ 2021-12-15 11:40 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-12-15 11:40 UTC (permalink / raw
To: gentoo-commits
commit: 62c564e6679094847603f21ffc1fd63a5345511c
Author: François Bissey <frp.bissey <AT> gmail <DOT> com>
AuthorDate: Mon Dec 13 03:35:11 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Wed Dec 15 11:40:31 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=62c564e6
sci-libs/bliss: New upstream release
Closes: https://bugs.gentoo.org/829119
Closes: https://github.com/gentoo/gentoo/pull/23284
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: François René Pierre Bissey <frp.bissey <AT> gmail.com>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-libs/bliss/Manifest | 1 +
sci-libs/bliss/bliss-0.77.ebuild | 28 +++++++++++++++++++++++
sci-libs/bliss/files/bliss-0.77-install.patch | 32 +++++++++++++++++++++++++++
3 files changed, 61 insertions(+)
diff --git a/sci-libs/bliss/Manifest b/sci-libs/bliss/Manifest
index 827342cdd284..69758a8152ae 100644
--- a/sci-libs/bliss/Manifest
+++ b/sci-libs/bliss/Manifest
@@ -1 +1,2 @@
DIST bliss-0.73.zip 94108 BLAKE2B 836184b31fa28db3328c21e7563366a93cf1645b02b96e185838e3c2513393b1d0a54783ca14c6d7f1a1d5055800bc3d7acde3c584e61e66c9ab93936824353b SHA512 30f505945c577d8bcb265a349f5bc9d4dcd96555fa3add285199cdd95ea2710f04409008ff06432daffab62c132e884845eae7f823191407906202862509e05d
+DIST bliss-0.77.zip 117888 BLAKE2B ce4b2fa568c5520fe41748bf59a493af1c33ec9cc0732aca5e5ba657ca726e118e26763355778e3def5716d62e7d3aceceb592ef67e5e148c250d3ffffab67d7 SHA512 d210f137e614bca7cf0d88851d0c62292bf479b687bca6a25d9e42661825f882a4ff8c74c96a965bd9d4f246a1bda6b90cef64894914e6f7b17db6bf4a8f4b17
diff --git a/sci-libs/bliss/bliss-0.77.ebuild b/sci-libs/bliss/bliss-0.77.ebuild
new file mode 100644
index 000000000000..88a4d042c220
--- /dev/null
+++ b/sci-libs/bliss/bliss-0.77.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+SRC_URI="https://users.aalto.fi/~tjunttil/${PN}/downloads/${P}.zip"
+DESCRIPTION="Compute Automorphism Groups and Canonical Labelings of Graphs"
+HOMEPAGE="https://users.aalto.fi/~tjunttil/bliss/index.html"
+
+LICENSE="LGPL-3"
+SLOT="0/1"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="gmp"
+
+RDEPEND="gmp? ( dev-libs/gmp:0= )"
+DEPEND="${RDEPEND}"
+BDEPEND="app-arch/unzip"
+PATCHES=( "${FILESDIR}/${PN}-0.77-install.patch" )
+
+src_configure() {
+ local mycmakeargs=(
+ -DUSE_GMP="$(usex gmp)"
+ )
+
+ cmake_src_configure
+}
diff --git a/sci-libs/bliss/files/bliss-0.77-install.patch b/sci-libs/bliss/files/bliss-0.77-install.patch
new file mode 100644
index 000000000000..caab14aa40f6
--- /dev/null
+++ b/sci-libs/bliss/files/bliss-0.77-install.patch
@@ -0,0 +1,32 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 01ed093..cfdb0a6 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -62,3 +62,27 @@ if(USE_GMP)
+ target_link_libraries(bliss-executable ${GMP_LIBRARIES})
+ endif(USE_GMP)
+ set_target_properties(bliss-executable PROPERTIES OUTPUT_NAME bliss)
++
++include(GNUInstallDirs)
++
++set(
++ BLISS_HEADERS
++ src/bliss_C.h
++ src/uintseqhash.hh
++ src/abstractgraph.hh
++ src/stats.hh
++ src/digraph.hh
++ src/defs.hh
++ src/heap.hh
++ src/graph.hh
++ src/partition.hh
++ src/kqueue.hh
++ src/utils.hh
++ src/orbit.hh
++ src/timer.hh
++ src/bignum.hh
++)
++
++install(TARGETS bliss-executable RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})
++install(TARGETS bliss LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR})
++install(FILES ${BLISS_HEADERS} DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/bliss)
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2017-01-01 18:17 [gentoo-commits] repo/gentoo:master commit in: sci-libs/bliss/files/, sci-libs/bliss/ Christoph Junghans
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