From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 9BD86139082 for ; Sat, 17 Dec 2016 19:30:15 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id ECE27E0C24; Sat, 17 Dec 2016 19:30:14 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id C87E5E0C24 for ; Sat, 17 Dec 2016 19:30:14 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 9F0FE340C9D for ; Sat, 17 Dec 2016 19:30:13 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E2A5124FE for ; Sat, 17 Dec 2016 18:13:17 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1481998282.38747acc6b11e00d4c075a07a026a6de0c6e521a.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/annovar/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/annovar/annovar-20160201.ebuild sci-biology/annovar/metadata.xml X-VCS-Directories: sci-biology/annovar/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 38747acc6b11e00d4c075a07a026a6de0c6e521a X-VCS-Branch: master Date: Sat, 17 Dec 2016 18:13:17 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 7915ec41-f2f1-44b0-83e3-76da8ff7abb9 X-Archives-Hash: fc5d91a9915bfc8e69dff96ad7580417 commit: 38747acc6b11e00d4c075a07a026a6de0c6e521a Author: Justin Lecher gentoo org> AuthorDate: Sat Dec 17 18:11:22 2016 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sat Dec 17 18:11:22 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=38747acc License missing and fetch restricted Signed-off-by: Justin Lecher gentoo.org> sci-biology/annovar/annovar-20160201.ebuild | 38 ----------------------------- sci-biology/annovar/metadata.xml | 12 --------- 2 files changed, 50 deletions(-) diff --git a/sci-biology/annovar/annovar-20160201.ebuild b/sci-biology/annovar/annovar-20160201.ebuild deleted file mode 100644 index 79ddbd1..0000000 --- a/sci-biology/annovar/annovar-20160201.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 - -DESCRIPTION="Annotate variation data in input VCF files" -HOMEPAGE="http://annovar.openbioinformatics.org" -SRC_URI="annovar-20160201.tar.gz - annovar-20160201_table_annovar.pl" - -LICENSE="annovar_personal_only" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="" -RDEPEND="dev-lang/perl - ${DEPEND}" - -RESTRICT="fetch" - -S="${WORKDIR}"/"${PN}" - -pkg_nofetch() { - einfo "Please visit ${HOMEPAGE} and obtain the file" - einfo "\"${P}.tar.gz\" and place it in ${DISTDIR}." - einfo "Also fetch an updated version of http://www.openbioinformatics.org/annovar/download/table_annovar.pl" - einfo "and place it into ${DISTDIR} as ${P}__table_annovar.pl." -} - -src_install(){ - dobin *.pl - # install a "patch" from table_annovar.pl - newbin "${DISTDIR}"/${P}_table_annovar.pl table_annovar.pl - insinto /usr/share/"${PN}" - doins -r example humandb -} diff --git a/sci-biology/annovar/metadata.xml b/sci-biology/annovar/metadata.xml deleted file mode 100644 index f68a1b6..0000000 --- a/sci-biology/annovar/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - -