From: "Justin Lecher" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/files/, dev-python/pandas/
Date: Sat, 3 Dec 2016 13:45:43 +0000 (UTC) [thread overview]
Message-ID: <1480772741.c8028ecb0e960b735506bf249ba143f96aad989f.jlec@gentoo> (raw)
commit: c8028ecb0e960b735506bf249ba143f96aad989f
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 3 13:45:01 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Dec 3 13:45:41 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c8028ecb
dev-python/pandas: Version Bump
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=585184
Move to modern virtualx.eclass usage
Package-Manager: portage-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
dev-python/pandas/Manifest | 1 +
dev-python/pandas/files/pandas-0.19.1-gapi.patch | 27 ++
dev-python/pandas/files/pandas-0.19.1-seqf.patch | 357 +++++++++++++++++++++++
dev-python/pandas/pandas-0.19.1.ebuild | 166 +++++++++++
dev-python/pandas/pandas-9999.ebuild | 130 +++++----
5 files changed, 631 insertions(+), 50 deletions(-)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index bb4cfe6..c7d4b01 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,3 +1,4 @@
DIST pandas-0.16.2.tar.gz 4931751 SHA256 e01853dfe111f3aea005315573400b7216ddbabbf1f28d482a71217d67ae4f81 SHA512 44874e12a42a01dd7ed88f3f97e954732a534a5e2dc4815ef6203bdb2d88850a607e6631a35ae8fc79f4621a5dfaa34f39bb1c9a0ecfb17da1cf0c10f35ff27b WHIRLPOOL 6f2874ac07b49f4b2aaefdb87375b7c5adb31e3ff60c6b808f3e3467ad82999dd894de884ebbfd64fc7235e875d17ce871b516c96ff71a17310b708597168702
DIST pandas-0.17.0.tar.gz 6508621 SHA256 320d4fdf734b82adebc8fde9d8ca4b05fe155a72b6f7aa95d76242da8748d6a4 SHA512 bae6964e263c7ff6cac722cdfe23081f23c357d9bc39a670b5627bef4630c236a58aa8c0393eae921721bf7049c8e5266b4dea71dd957da5d89dafc14a04797b WHIRLPOOL d654eb2f9ffbfedbde60e4a6e6ce6f54650a8a68b4d20035744aa55111525d6bba4dae2ccbfce65acf71bb200e2e6029c7f6c9bcc9d0c582d808444738baedb1
DIST pandas-0.17.1.tar.gz 6674479 SHA256 cfd7214a7223703fe6999fbe34837749540efee1c985e6aee9933f30e3f72837 SHA512 9d9f9064585b1f3551625e0c8f4eedaaa1253790c2a5cb28e58e70eb805cc18f9770d793aa748cbd76798488ff60efdd01eb4b21daf5ad8f1dc4d9c050487234 WHIRLPOOL 5238575bd64b8d38db4f9a0ea987a7f78ffd1821e5a22bad65c84c407feca3af6f3b536a0a2f337291aa04e94c86fdb40382dad4ce50f8a33a5e26d655c628c2
+DIST pandas-0.19.1.tar.gz 8360233 SHA256 2509feaeda72fce03675e2eccd2284bb1cadb6a0737008a5e741fe2431d47421 SHA512 6451990a7fae8c6db8ab0b014a13b4f1828754d3998f13c17b111f891fb9fd23f8e09b907623096dfa55668c42298eee1373210a9fddb95f56dd7d552b964e6f WHIRLPOOL 700c0d819ab62134baf56430b7fa8840636ea377d00397341d33ec5f13474d9eeefea245aede80a80f7c16348ef811788947e5fe0020c9770005c74dd1288ef3
diff --git a/dev-python/pandas/files/pandas-0.19.1-gapi.patch b/dev-python/pandas/files/pandas-0.19.1-gapi.patch
new file mode 100644
index 00000000..7a0456f
--- /dev/null
+++ b/dev-python/pandas/files/pandas-0.19.1-gapi.patch
@@ -0,0 +1,27 @@
+From 1d6dbb41b26a39121ec8c4f19f5da78bb0ab4af7 Mon Sep 17 00:00:00 2001
+From: Jeff Reback <jeff@reback.net>
+Date: Sat, 12 Nov 2016 12:44:06 -0500
+Subject: [PATCH] TST: skip test_gbq.test_upload_data_if_table_exists_replace
+ for now
+
+---
+ pandas/io/tests/test_gbq.py | 3 +++
+ 1 file changed, 3 insertions(+)
+
+diff --git a/pandas/io/tests/test_gbq.py b/pandas/io/tests/test_gbq.py
+index cca1580b8..f6ff35a6d 100644
+--- a/pandas/io/tests/test_gbq.py
++++ b/pandas/io/tests/test_gbq.py
+@@ -824,6 +824,9 @@ class TestToGBQIntegration(tm.TestCase):
+ private_key=_get_private_key_path())
+
+ def test_upload_data_if_table_exists_replace(self):
++
++ raise nose.SkipTest("buggy test")
++
+ destination_table = DESTINATION_TABLE + "4"
+
+ test_size = 10
+--
+2.11.0
+
diff --git a/dev-python/pandas/files/pandas-0.19.1-seqf.patch b/dev-python/pandas/files/pandas-0.19.1-seqf.patch
new file mode 100644
index 00000000..c82c14f
--- /dev/null
+++ b/dev-python/pandas/files/pandas-0.19.1-seqf.patch
@@ -0,0 +1,357 @@
+From f8bd08e9c2fc6365980f41b846bbae4b40f08b83 Mon Sep 17 00:00:00 2001
+From: Jeff Reback <jeff@reback.net>
+Date: Sat, 12 Nov 2016 10:58:54 -0500
+Subject: [PATCH] BUG: segfault manifesting with dateutil=2.6 w.r.t. replace
+ when timezones are present
+
+closes #14621
+
+Author: Jeff Reback <jeff@reback.net>
+
+Closes #14631 from jreback/replace and squashes the following commits:
+
+3f95042 [Jeff Reback] BUG: segfault manifesting with dateutil=2.6 w.r.t. replace when timezones are present
+---
+ ci/requirements-3.5_OSX.pip | 2 +-
+ doc/source/whatsnew/v0.19.2.txt | 3 ++
+ pandas/tseries/offsets.py | 1 +
+ pandas/tseries/tests/test_offsets.py | 20 ++++---
+ pandas/tseries/tests/test_timezones.py | 89 +++++++++++++++++++++++++++++--
+ pandas/tseries/tests/test_tslib.py | 5 +-
+ pandas/tslib.pyx | 95 ++++++++++++++++++++++++++++------
+ 7 files changed, 188 insertions(+), 27 deletions(-)
+
+diff --git a/pandas/tseries/offsets.py b/pandas/tseries/offsets.py
+index 051cc8aa4..2e3852a7e 100644
+--- a/pandas/tseries/offsets.py
++++ b/pandas/tseries/offsets.py
+@@ -68,6 +68,7 @@ def apply_wraps(func):
+ other = other.tz_localize(None)
+
+ result = func(self, other)
++
+ if self._adjust_dst:
+ result = tslib._localize_pydatetime(result, tz)
+
+diff --git a/pandas/tseries/tests/test_offsets.py b/pandas/tseries/tests/test_offsets.py
+index 1735ac4e2..768e9212e 100644
+--- a/pandas/tseries/tests/test_offsets.py
++++ b/pandas/tseries/tests/test_offsets.py
+@@ -1,4 +1,5 @@
+ import os
++from distutils.version import LooseVersion
+ from datetime import date, datetime, timedelta
+ from dateutil.relativedelta import relativedelta
+ from pandas.compat import range, iteritems
+@@ -4851,6 +4852,7 @@ class TestDST(tm.TestCase):
+
+ def _test_offset(self, offset_name, offset_n, tstart, expected_utc_offset):
+ offset = DateOffset(**{offset_name: offset_n})
++
+ t = tstart + offset
+ if expected_utc_offset is not None:
+ self.assertTrue(get_utc_offset_hours(t) == expected_utc_offset)
+@@ -4890,17 +4892,23 @@ class TestDST(tm.TestCase):
+ return Timestamp(string + offset_string).tz_convert(tz)
+
+ def test_fallback_plural(self):
+- """test moving from daylight savings to standard time"""
++ # test moving from daylight savings to standard time
++ import dateutil
+ for tz, utc_offsets in self.timezone_utc_offsets.items():
+ hrs_pre = utc_offsets['utc_offset_daylight']
+ hrs_post = utc_offsets['utc_offset_standard']
+- self._test_all_offsets(
+- n=3, tstart=self._make_timestamp(self.ts_pre_fallback,
+- hrs_pre, tz),
+- expected_utc_offset=hrs_post)
++
++ if dateutil.__version__ != LooseVersion('2.6.0'):
++ # buggy ambiguous behavior in 2.6.0
++ # GH 14621
++ # https://github.com/dateutil/dateutil/issues/321
++ self._test_all_offsets(
++ n=3, tstart=self._make_timestamp(self.ts_pre_fallback,
++ hrs_pre, tz),
++ expected_utc_offset=hrs_post)
+
+ def test_springforward_plural(self):
+- """test moving from standard to daylight savings"""
++ # test moving from standard to daylight savings
+ for tz, utc_offsets in self.timezone_utc_offsets.items():
+ hrs_pre = utc_offsets['utc_offset_standard']
+ hrs_post = utc_offsets['utc_offset_daylight']
+diff --git a/pandas/tseries/tests/test_timezones.py b/pandas/tseries/tests/test_timezones.py
+index 00e8ee631..db8cda5c7 100644
+--- a/pandas/tseries/tests/test_timezones.py
++++ b/pandas/tseries/tests/test_timezones.py
+@@ -4,7 +4,7 @@ import nose
+
+ import numpy as np
+ import pytz
+-
++from distutils.version import LooseVersion
+ from pandas.types.dtypes import DatetimeTZDtype
+ from pandas import (Index, Series, DataFrame, isnull, Timestamp)
+
+@@ -518,8 +518,12 @@ class TestTimeZoneSupportPytz(tm.TestCase):
+
+ times = date_range("2013-10-26 23:00", "2013-10-27 01:00", freq="H",
+ tz=tz, ambiguous='infer')
+- self.assertEqual(times[0], Timestamp('2013-10-26 23:00', tz=tz))
+- self.assertEqual(times[-1], Timestamp('2013-10-27 01:00', tz=tz))
++ self.assertEqual(times[0], Timestamp('2013-10-26 23:00', tz=tz,
++ freq="H"))
++ if dateutil.__version__ != LooseVersion('2.6.0'):
++ # GH 14621
++ self.assertEqual(times[-1], Timestamp('2013-10-27 01:00', tz=tz,
++ freq="H"))
+
+ def test_ambiguous_nat(self):
+ tz = self.tz('US/Eastern')
+@@ -1163,6 +1167,85 @@ class TestTimeZones(tm.TestCase):
+ def setUp(self):
+ tm._skip_if_no_pytz()
+
++ def test_replace(self):
++ # GH 14621
++ # GH 7825
++ # replacing datetime components with and w/o presence of a timezone
++ dt = Timestamp('2016-01-01 09:00:00')
++ result = dt.replace(hour=0)
++ expected = Timestamp('2016-01-01 00:00:00')
++ self.assertEqual(result, expected)
++
++ for tz in self.timezones:
++ dt = Timestamp('2016-01-01 09:00:00', tz=tz)
++ result = dt.replace(hour=0)
++ expected = Timestamp('2016-01-01 00:00:00', tz=tz)
++ self.assertEqual(result, expected)
++
++ # we preserve nanoseconds
++ dt = Timestamp('2016-01-01 09:00:00.000000123', tz=tz)
++ result = dt.replace(hour=0)
++ expected = Timestamp('2016-01-01 00:00:00.000000123', tz=tz)
++ self.assertEqual(result, expected)
++
++ # test all
++ dt = Timestamp('2016-01-01 09:00:00.000000123', tz=tz)
++ result = dt.replace(year=2015, month=2, day=2, hour=0, minute=5,
++ second=5, microsecond=5, nanosecond=5)
++ expected = Timestamp('2015-02-02 00:05:05.000005005', tz=tz)
++ self.assertEqual(result, expected)
++
++ # error
++ def f():
++ dt.replace(foo=5)
++ self.assertRaises(ValueError, f)
++
++ def f():
++ dt.replace(hour=0.1)
++ self.assertRaises(ValueError, f)
++
++ # assert conversion to naive is the same as replacing tzinfo with None
++ dt = Timestamp('2013-11-03 01:59:59.999999-0400', tz='US/Eastern')
++ self.assertEqual(dt.tz_localize(None), dt.replace(tzinfo=None))
++
++ def test_ambiguous_compat(self):
++ # validate that pytz and dateutil are compat for dst
++ # when the transition happens
++ tm._skip_if_no_dateutil()
++ tm._skip_if_no_pytz()
++
++ pytz_zone = 'Europe/London'
++ dateutil_zone = 'dateutil/Europe/London'
++ result_pytz = (Timestamp('2013-10-27 01:00:00')
++ .tz_localize(pytz_zone, ambiguous=0))
++ result_dateutil = (Timestamp('2013-10-27 01:00:00')
++ .tz_localize(dateutil_zone, ambiguous=0))
++ self.assertEqual(result_pytz.value, result_dateutil.value)
++ self.assertEqual(result_pytz.value, 1382835600000000000)
++
++ # dateutil 2.6 buggy w.r.t. ambiguous=0
++ if dateutil.__version__ != LooseVersion('2.6.0'):
++ # GH 14621
++ # https://github.com/dateutil/dateutil/issues/321
++ self.assertEqual(result_pytz.to_pydatetime().tzname(),
++ result_dateutil.to_pydatetime().tzname())
++ self.assertEqual(str(result_pytz), str(result_dateutil))
++
++ # 1 hour difference
++ result_pytz = (Timestamp('2013-10-27 01:00:00')
++ .tz_localize(pytz_zone, ambiguous=1))
++ result_dateutil = (Timestamp('2013-10-27 01:00:00')
++ .tz_localize(dateutil_zone, ambiguous=1))
++ self.assertEqual(result_pytz.value, result_dateutil.value)
++ self.assertEqual(result_pytz.value, 1382832000000000000)
++
++ # dateutil < 2.6 is buggy w.r.t. ambiguous timezones
++ if dateutil.__version__ > LooseVersion('2.5.3'):
++ # GH 14621
++ self.assertEqual(str(result_pytz), str(result_dateutil))
++ self.assertEqual(result_pytz.to_pydatetime().tzname(),
++ result_dateutil.to_pydatetime().tzname())
++
+ def test_index_equals_with_tz(self):
+ left = date_range('1/1/2011', periods=100, freq='H', tz='utc')
+ right = date_range('1/1/2011', periods=100, freq='H', tz='US/Eastern')
+diff --git a/pandas/tseries/tests/test_tslib.py b/pandas/tseries/tests/test_tslib.py
+index 21cfe84f1..b45f867be 100644
+--- a/pandas/tseries/tests/test_tslib.py
++++ b/pandas/tseries/tests/test_tslib.py
+@@ -327,8 +327,9 @@ class TestTimestamp(tm.TestCase):
+
+ # dateutil zone change (only matters for repr)
+ import dateutil
+- if dateutil.__version__ >= LooseVersion(
+- '2.3') and dateutil.__version__ <= LooseVersion('2.4.0'):
++ if (dateutil.__version__ >= LooseVersion('2.3') and
++ (dateutil.__version__ <= LooseVersion('2.4.0') or
++ dateutil.__version__ >= LooseVersion('2.6.0'))):
+ timezones = ['UTC', 'Asia/Tokyo', 'US/Eastern',
+ 'dateutil/US/Pacific']
+ else:
+diff --git a/pandas/tslib.pyx b/pandas/tslib.pyx
+index d4eaaa0b5..685de214c 100644
+--- a/pandas/tslib.pyx
++++ b/pandas/tslib.pyx
+@@ -98,6 +98,7 @@ except NameError: # py3
+ cdef inline object create_timestamp_from_ts(
+ int64_t value, pandas_datetimestruct dts,
+ object tz, object freq):
++ """ convenience routine to construct a Timestamp from its parts """
+ cdef _Timestamp ts_base
+ ts_base = _Timestamp.__new__(Timestamp, dts.year, dts.month,
+ dts.day, dts.hour, dts.min,
+@@ -112,6 +113,7 @@ cdef inline object create_timestamp_from_ts(
+ cdef inline object create_datetime_from_ts(
+ int64_t value, pandas_datetimestruct dts,
+ object tz, object freq):
++ """ convenience routine to construct a datetime.datetime from its parts """
+ return datetime(dts.year, dts.month, dts.day, dts.hour,
+ dts.min, dts.sec, dts.us, tz)
+
+@@ -378,7 +380,6 @@ class Timestamp(_Timestamp):
+ # Mixing pydatetime positional and keyword arguments is forbidden!
+
+ cdef _TSObject ts
+- cdef _Timestamp ts_base
+
+ if offset is not None:
+ # deprecate offset kwd in 0.19.0, GH13593
+@@ -412,17 +413,7 @@ class Timestamp(_Timestamp):
+ from pandas.tseries.frequencies import to_offset
+ freq = to_offset(freq)
+
+- # make datetime happy
+- ts_base = _Timestamp.__new__(cls, ts.dts.year, ts.dts.month,
+- ts.dts.day, ts.dts.hour, ts.dts.min,
+- ts.dts.sec, ts.dts.us, ts.tzinfo)
+-
+- # fill out rest of data
+- ts_base.value = ts.value
+- ts_base.freq = freq
+- ts_base.nanosecond = ts.dts.ps / 1000
+-
+- return ts_base
++ return create_timestamp_from_ts(ts.value, ts.dts, ts.tzinfo, freq)
+
+ def _round(self, freq, rounder):
+
+@@ -660,8 +651,80 @@ class Timestamp(_Timestamp):
+ astimezone = tz_convert
+
+ def replace(self, **kwds):
+- return Timestamp(datetime.replace(self, **kwds),
+- freq=self.freq)
++ """
++ implements datetime.replace, handles nanoseconds
++
++ Parameters
++ ----------
++ kwargs: key-value dict
++
++ accepted keywords are:
++ year, month, day, hour, minute, second, microsecond, nanosecond, tzinfo
++
++ values must be integer, or for tzinfo, a tz-convertible
++
++ Returns
++ -------
++ Timestamp with fields replaced
++ """
++
++ cdef:
++ pandas_datetimestruct dts
++ int64_t value
++ object tzinfo, result, k, v
++ _TSObject ts
++
++ # set to naive if needed
++ tzinfo = self.tzinfo
++ value = self.value
++ if tzinfo is not None:
++ value = tz_convert_single(value, 'UTC', tzinfo)
++
++ # setup components
++ pandas_datetime_to_datetimestruct(value, PANDAS_FR_ns, &dts)
++ dts.ps = self.nanosecond * 1000
++
++ # replace
++ def validate(k, v):
++ """ validate integers """
++ if not isinstance(v, int):
++ raise ValueError("value must be an integer, received {v} for {k}".format(v=type(v), k=k))
++ return v
++
++ for k, v in kwds.items():
++ if k == 'year':
++ dts.year = validate(k, v)
++ elif k == 'month':
++ dts.month = validate(k, v)
++ elif k == 'day':
++ dts.day = validate(k, v)
++ elif k == 'hour':
++ dts.hour = validate(k, v)
++ elif k == 'minute':
++ dts.min = validate(k, v)
++ elif k == 'second':
++ dts.sec = validate(k, v)
++ elif k == 'microsecond':
++ dts.us = validate(k, v)
++ elif k == 'nanosecond':
++ dts.ps = validate(k, v) * 1000
++ elif k == 'tzinfo':
++ tzinfo = v
++ else:
++ raise ValueError("invalid name {} passed".format(k))
++
++ # reconstruct & check bounds
++ value = pandas_datetimestruct_to_datetime(PANDAS_FR_ns, &dts)
++ if value != NPY_NAT:
++ _check_dts_bounds(&dts)
++
++ # set tz if needed
++ if tzinfo is not None:
++ value = tz_convert_single(value, tzinfo, 'UTC')
++
++ result = create_timestamp_from_ts(value, dts, tzinfo, self.freq)
++
++ return result
+
+ def isoformat(self, sep='T'):
+ base = super(_Timestamp, self).isoformat(sep=sep)
+@@ -5041,7 +5104,9 @@ cpdef normalize_date(object dt):
+ -------
+ normalized : datetime.datetime or Timestamp
+ """
+- if PyDateTime_Check(dt):
++ if is_timestamp(dt):
++ return dt.replace(hour=0, minute=0, second=0, microsecond=0, nanosecond=0)
++ elif PyDateTime_Check(dt):
+ return dt.replace(hour=0, minute=0, second=0, microsecond=0)
+ elif PyDate_Check(dt):
+ return datetime(dt.year, dt.month, dt.day)
+--
+2.11.0
+
diff --git a/dev-python/pandas/pandas-0.19.1.ebuild b/dev-python/pandas/pandas-0.19.1.ebuild
new file mode 100644
index 00000000..aea548f
--- /dev/null
+++ b/dev-python/pandas/pandas-0.19.1.ebuild
@@ -0,0 +1,166 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{4,5} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 eutils flag-o-matic virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="http://pandas.pydata.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc -minimal full-support test X"
+
+MINIMAL_DEPEND="
+ >dev-python/numpy-1.7[${PYTHON_USEDEP}]
+ >=dev-python/python-dateutil-2.0[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+ !<dev-python/numexpr-2.1[${PYTHON_USEDEP}]
+ !~dev-python/openpyxl-1.9.0[${PYTHON_USEDEP}]"
+RECOMMENDED_DEPEND="
+ dev-python/bottleneck[${PYTHON_USEDEP}]
+ >=dev-python/numexpr-2.1[${PYTHON_USEDEP}]"
+OPTIONAL_DEPEND="
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/blosc[${PYTHON_USEDEP}]
+ dev-python/boto[${PYTHON_USEDEP}]
+ >=dev-python/google-api-python-client-1.2.0[$(python_gen_usedep python2_7 pypy)]
+ || ( dev-python/html5lib[${PYTHON_USEDEP}] dev-python/lxml[${PYTHON_USEDEP}] )
+ dev-python/httplib2[${PYTHON_USEDEP}]
+ dev-python/jinja[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ || ( >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] dev-python/xlsxwriter[${PYTHON_USEDEP}] )
+ >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+ dev-python/python-gflags[$(python_gen_usedep python2_7 pypy)]
+ dev-python/rpy[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ dev-python/statsmodels[${PYTHON_USEDEP}]
+ >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ X? (
+ || (
+ dev-python/PyQt4[${PYTHON_USEDEP}]
+ dev-python/pyside[${PYTHON_USEDEP}]
+ dev-python/pygtk[$(python_gen_usedep python2_7)]
+ )
+ || (
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+ )
+ "
+
+DEPEND="${MINIMAL_DEPEND}
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ >=dev-python/cython-0.19.1[${PYTHON_USEDEP}]
+ doc? (
+ ${VIRTUALX_DEPEND}
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/ipython[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+ >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+ dev-python/rpy[${PYTHON_USEDEP}]
+ >=dev-python/sphinx-1.2.1[${PYTHON_USEDEP}]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ )
+ test? (
+ ${VIRTUALX_DEPEND}
+ ${RECOMMENDED_DEPEND}
+ ${OPTIONAL_DEPEND}
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/nose[${PYTHON_USEDEP}]
+ dev-python/pymysql[${PYTHON_USEDEP}]
+ dev-python/psycopg:2[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )"
+# dev-python/statsmodels invokes a circular dep
+# hence rm from doc? ( ), again
+RDEPEND="
+ ${MINIMAL_DEPEND}
+ !minimal? ( ${RECOMMENDED_DEPEND} )
+ full-support? ( ${OPTIONAL_DEPEND} )"
+
+PATCHES=(
+ "${FILESDIR}"/${P}-gapi.patch
+ "${FILESDIR}"/${P}-seqf.patch
+)
+
+python_prepare_all() {
+ # Prevent un-needed download during build
+ sed -e "/^ 'sphinx.ext.intersphinx',/d" -i doc/source/conf.py || die
+
+ # https://github.com/pydata/pandas/issues/11299
+ sed \
+ -e 's:testOdArray:disable:g' \
+ -i pandas/io/tests/json/test_ujson.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+ # To build docs the need be located in $BUILD_DIR,
+ # else PYTHONPATH points to unusable modules.
+ if use doc; then
+ cd "${BUILD_DIR}"/lib || die
+ cp -ar "${S}"/doc . && cd doc || die
+ LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html || die
+ fi
+}
+
+python_test() {
+ local test_pandas='not network and not disabled'
+ [[ -n "${FAST_PANDAS}" ]] && test_pandas+=' and not slow'
+ pushd "${BUILD_DIR}"/lib > /dev/null
+ "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+ PYTHONPATH=. MPLCONFIGDIR=. \
+ virtx nosetests --verbosity=3 -A "${test_pandas}" pandas
+ popd > /dev/null
+}
+
+python_install_all() {
+ if use doc; then
+ dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+ einfo "An initial build of docs is absent of references to statsmodels"
+ einfo "due to circular dependency. To have them included, emerge"
+ einfo "statsmodels next and re-emerge pandas with USE doc"
+ fi
+
+ distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+ optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+ optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" >=dev-python/numexpr-2.1
+ optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml
+ optfeature "for msgpack compression using ``blosc``" dev-python/blosc
+ optfeature "necessary for Amazon S3 access" dev-python/boto
+ optfeature "needed for pandas.io.gbq" dev-python/httplib2 dev-python/setuptools dev-python/python-gflags >=dev-python/google-api-python-client-1.2.0
+ optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+ optfeature "Plotting support" dev-python/matplotlib
+ optfeature "Needed for Excel I/O" >=dev-python/openpyxl-1.6.1 dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+ optfeature "necessary for HDF5-based storage" >=dev-python/pytables-3.2.1
+ optfeature "R I/O support" dev-python/rpy
+ optfeature "Needed for parts of :mod:`pandas.stats`" dev-python/statsmodels
+ optfeature "SQL database support" >=dev-python/sqlalchemy-0.8.1
+ optfeature "miscellaneous statistical functions" sci-libs/scipy
+ optfeature "necessary to use ~pandas.io.clipboard.read_clipboard support" dev-python/PyQt4 dev-python/pyside dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}
diff --git a/dev-python/pandas/pandas-9999.ebuild b/dev-python/pandas/pandas-9999.ebuild
index f62cf51..02a7a20 100644
--- a/dev-python/pandas/pandas-9999.ebuild
+++ b/dev-python/pandas/pandas-9999.ebuild
@@ -1,12 +1,14 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
-PYTHON_COMPAT=( python2_7 python3_4 )
+PYTHON_COMPAT=( python2_7 python3_{4,5} )
PYTHON_REQ_USE="threads(+)"
+VIRTUALX_REQUIRED="manual"
+
inherit distutils-r1 eutils flag-o-matic git-r3 virtualx
DESCRIPTION="Powerful data structures for data analysis and statistics"
@@ -17,68 +19,86 @@ EGIT_REPO_URI="https://github.com/pydata/pandas.git"
SLOT="0"
LICENSE="BSD"
KEYWORDS=""
-IUSE="doc excel html test R"
+IUSE="doc -minimal full-support test X"
-EXTRA_DEPEND="
+MINIMAL_DEPEND="
+ >dev-python/numpy-1.7[${PYTHON_USEDEP}]
+ >=dev-python/python-dateutil-2.0[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+ !<dev-python/numexpr-2.1[${PYTHON_USEDEP}]
+ !~dev-python/openpyxl-1.9.0[${PYTHON_USEDEP}]"
+RECOMMENDED_DEPEND="
+ dev-python/bottleneck[${PYTHON_USEDEP}]
+ >=dev-python/numexpr-2.1[${PYTHON_USEDEP}]"
+OPTIONAL_DEPEND="
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/blosc[${PYTHON_USEDEP}]
+ dev-python/boto[${PYTHON_USEDEP}]
>=dev-python/google-api-python-client-1.2.0[$(python_gen_usedep python2_7 pypy)]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
+ || ( dev-python/html5lib[${PYTHON_USEDEP}] dev-python/lxml[${PYTHON_USEDEP}] )
+ dev-python/httplib2[${PYTHON_USEDEP}]
+ dev-python/jinja[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ || ( >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] dev-python/xlsxwriter[${PYTHON_USEDEP}] )
+ >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
dev-python/python-gflags[$(python_gen_usedep python2_7 pypy)]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
+ dev-python/rpy[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
dev-python/statsmodels[${PYTHON_USEDEP}]
- dev-python/sqlalchemy[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ X? (
+ || (
+ dev-python/PyQt4[${PYTHON_USEDEP}]
+ dev-python/pyside[${PYTHON_USEDEP}]
+ dev-python/pygtk[$(python_gen_usedep python2_7)]
+ )
+ || (
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+ )
"
-CDEPEND="
- >dev-python/numpy-1.7[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.0[${PYTHON_USEDEP}]
- !~dev-python/openpyxl-1.9.0[${PYTHON_USEDEP}]"
-DEPEND="${CDEPEND}
+
+DEPEND="${MINIMAL_DEPEND}
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ >=dev-python/cython-0.19.1[${PYTHON_USEDEP}]
doc? (
+ ${VIRTUALX_DEPEND}
dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/ipython[${PYTHON_USEDEP}]
dev-python/lxml[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
>=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
>=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
dev-python/pytz[${PYTHON_USEDEP}]
dev-python/rpy[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
>=dev-python/sphinx-1.2.1[${PYTHON_USEDEP}]
- dev-python/xlrd[$(python_gen_usedep 'python2_7')]
- dev-python/xlwt[$(python_gen_usedep 'python2_7')]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
x11-misc/xclip
- )
+ )
test? (
- ${EXTRA_DEPEND}
+ ${VIRTUALX_DEPEND}
+ ${RECOMMENDED_DEPEND}
+ ${OPTIONAL_DEPEND}
dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
dev-python/nose[${PYTHON_USEDEP}]
+ dev-python/pymysql[${PYTHON_USEDEP}]
+ dev-python/psycopg:2[${PYTHON_USEDEP}]
x11-misc/xclip
x11-misc/xsel
- )"
+ )"
# dev-python/statsmodels invokes a circular dep
# hence rm from doc? ( ), again
-RDEPEND="${CDEPEND}
- >=dev-python/numexpr-2.1[${PYTHON_USEDEP}]
- dev-python/bottleneck[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/pytables[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- excel? (
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- dev-python/xlrd[$(python_gen_usedep 'python2_7')]
- dev-python/xlwt[$(python_gen_usedep 'python2_7')]
- )
- html? (
- dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
- || (
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}] )
- )
- R? ( dev-python/rpy[${PYTHON_USEDEP}] )"
+RDEPEND="
+ ${MINIMAL_DEPEND}
+ !minimal? ( ${RECOMMENDED_DEPEND} )
+ full-support? ( ${OPTIONAL_DEPEND} )"
python_prepare_all() {
# Prevent un-needed download during build
@@ -93,7 +113,7 @@ python_compile_all() {
if use doc; then
cd "${BUILD_DIR}"/lib || die
cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. "${EPYTHON}" make.py html || die
+ LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html || die
fi
}
@@ -101,9 +121,9 @@ python_test() {
local test_pandas='not network and not disabled'
[[ -n "${FAST_PANDAS}" ]] && test_pandas+=' and not slow'
pushd "${BUILD_DIR}"/lib > /dev/null
- VIRTUALX_COMMAND="nosetests"
- PYTHONPATH=. MPLCONFIGDIR=. HOME=. \
- virtualmake --verbosity=3 -A "${test_pandas}" pandas
+ "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+ PYTHONPATH=. MPLCONFIGDIR=. \
+ virtx nosetests --verbosity=3 -A "${test_pandas}" pandas.io.tests.json.test_ujson.NumpyJSONTests
popd > /dev/null
}
@@ -119,9 +139,19 @@ python_install_all() {
}
pkg_postinst() {
- local x
- elog "Please install"
- for x in ${EXTRA_DEPEND}; do
- optfeature "additional functionality" "${x%%[*}"
- done
+ optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+ optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" >=dev-python/numexpr-2.1
+ optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml
+ optfeature "for msgpack compression using ``blosc``" dev-python/blosc
+ optfeature "necessary for Amazon S3 access" dev-python/boto
+ optfeature "needed for pandas.io.gbq" dev-python/httplib2 dev-python/setuptools dev-python/python-gflags >=dev-python/google-api-python-client-1.2.0
+ optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+ optfeature "Plotting support" dev-python/matplotlib
+ optfeature "Needed for Excel I/O" >=dev-python/openpyxl-1.6.1 dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+ optfeature "necessary for HDF5-based storage" >=dev-python/pytables-3.2.1
+ optfeature "R I/O support" dev-python/rpy
+ optfeature "Needed for parts of :mod:`pandas.stats`" dev-python/statsmodels
+ optfeature "SQL database support" >=dev-python/sqlalchemy-0.8.1
+ optfeature "miscellaneous statistical functions" sci-libs/scipy
+ optfeature "necessary to use ~pandas.io.clipboard.read_clipboard support" dev-python/PyQt4 dev-python/pyside dev-python/pygtk x11-misc/xclip x11-misc/xsel
}
next reply other threads:[~2016-12-03 13:45 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-12-03 13:45 Justin Lecher [this message]
-- strict thread matches above, loose matches on Subject: below --
2024-11-13 6:55 [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/files/, dev-python/pandas/ Michał Górny
2023-12-09 10:32 Michał Górny
2023-08-31 20:21 Michał Górny
2021-10-29 16:59 Sam James
2020-08-07 19:56 Michał Górny
2020-01-19 19:54 Pacho Ramos
2018-08-23 18:44 Virgil Dupras
2018-05-10 14:10 Andreas Sturmlechner
2015-11-16 11:12 Justin Lecher
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