[gentoo-commits] repo/gentoo:master commit in: sci-biology/biogrep/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/biogrep/

[David Seifert]

commit:     1c4a7faeaaf81bf5f804449d00bea58ae5bd0b24
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri Nov 18 18:19:38 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri Nov 18 22:39:37 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1c4a7fae

sci-biology/biogrep: Port to EAPI=6

* Add USE="doc" and USE="examples"
* Run 'eautoreconf' to modernize configure script

Package-Manager: portage-2.3.2

 sci-biology/biogrep/Manifest              |  1 +
 sci-biology/biogrep/biogrep-1.0-r2.ebuild | 36 +++++++++++++++++++++++++++++++
 2 files changed, 37 insertions(+)

diff --git a/sci-biology/biogrep/Manifest b/sci-biology/biogrep/Manifest
index 6b0006a..155e123 100644
--- a/sci-biology/biogrep/Manifest
+++ b/sci-biology/biogrep/Manifest
@@ -1 +1,2 @@
+DIST biogrep-1.0.pdf 22179 SHA256 87f6a0952a2ebba43fff265d2396851d0be0b578fa94ff11f7dc0427bf784528 SHA512 b0430bded7529a14e3e551e4c7deeffdbdbbe674b5a4bd68afa359b2a4e9f0b8fb4a6474673d298508fa728cf83a328327860e60b3777e92afb15fa87f076411 WHIRLPOOL 02e4c3cc8dfc15f48107731d8515df60e4bde0546eb93cb20bcefb22a1da4a7d7aef05ad7225330e1b276ad7bd34ac7cc1ff2dbbb76a75631c90679cf821c68b
 DIST biogrep-1.0.tar.gz 71867 SHA256 15421d79f6f16d6bf9bef132a97f7f9ede1bd42d3fb90572df04a1e1abd8cfd8 SHA512 da07ea6f5f6fd601a94dc1b9495b204affcdc4d5e7fedfebbb65d6382ef0573e43b4ebd081c24909b2790ec2ae532505604112d4943c3e4e6575e13bdcdf1ae3 WHIRLPOOL 3b73e1d0908a7ceebe72a2660c2b13df168449d246411e1a29b3b910951c9932f86f3a829499bc53c22a6b6881097d846bfa6bd95968f246a669076c798af173

diff --git a/sci-biology/biogrep/biogrep-1.0-r2.ebuild b/sci-biology/biogrep/biogrep-1.0-r2.ebuild
new file mode 100644
index 00000000..7a5e486
--- /dev/null
+++ b/sci-biology/biogrep/biogrep-1.0-r2.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Multithreaded tool for matching large sets of patterns against biosequence DBs"
+HOMEPAGE="http://stephanopoulos.openwetware.org/BIOGREP.html"
+SRC_URI="http://www.openwetware.org/images/3/3d/${P^}.tar.gz -> ${P}.tar.gz
+	doc? ( http://www.openwetware.org/images/4/49/${PN^}.pdf -> ${P}.pdf )"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples"
+
+src_prepare() {
+	default
+	mv configure.{in,ac} || die
+	eautoreconf
+}
+
+src_install() {
+	use doc && DOCS+=( "${DISTDIR}"/${P}.pdf )
+	if use examples; then
+		# remove cruft before installing examples
+		find examples/ \( -name 'CVS' -o -name '*~' \) -exec rm -rf '{}' + || die
+
+		DOCS+=( examples )
+		docompress -x /usr/share/doc/${PF}/examples
+	fi
+
+	default
+}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/biogrep/

[David Seifert]

commit:     fbfd0e86cb1a49b25107a979b2849275f4491824
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri Nov 18 18:21:01 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri Nov 18 22:39:41 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fbfd0e86

sci-biology/biogrep: Remove old ebuilds

Package-Manager: portage-2.3.2

 sci-biology/biogrep/biogrep-1.0-r1.ebuild | 25 -------------------------
 sci-biology/biogrep/biogrep-1.0.ebuild    | 18 ------------------
 2 files changed, 43 deletions(-)

diff --git a/sci-biology/biogrep/biogrep-1.0-r1.ebuild b/sci-biology/biogrep/biogrep-1.0-r1.ebuild
deleted file mode 100644
index f4af74c..00000000
--- a/sci-biology/biogrep/biogrep-1.0-r1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="3"
-
-inherit toolchain-funcs
-
-DESCRIPTION="Multithreading application for matching large sets of patternsagainst biosequence dbs"
-HOMEPAGE="http://web.mit.edu/bamel/biogrep.shtml"
-SRC_URI="http://web.mit.edu/bamel/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-src_prepare() {
-	tc-export CC
-}
-
-src_install() {
-	emake prefix="${D}"/usr install || die "install failed"
-	dodoc AUTHORS ChangeLog NEWS README || die "dodoc failed"
-}

diff --git a/sci-biology/biogrep/biogrep-1.0.ebuild b/sci-biology/biogrep/biogrep-1.0.ebuild
deleted file mode 100644
index b2161dc..00000000
--- a/sci-biology/biogrep/biogrep-1.0.ebuild
+++ /dev/null
@@ -1,18 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-DESCRIPTION="Multithreading application for matching large sets of patterns
-against biosequence dbs."
-HOMEPAGE="http://web.mit.edu/bamel/biogrep.shtml"
-SRC_URI="http://web.mit.edu/bamel/${P}.tar.gz"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-src_install() {
-	emake prefix="${D}"/usr install || die "install failed"
-	dodoc AUTHORS ChangeLog NEWS README || die "dodoc failed"
-}