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From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
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Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
Message-ID: <1479164882.6911112e32296b390cdd2bda69aba1ae426a2031.mmokrejs@gentoo>
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/VarScan/
X-VCS-Repository: proj/sci
X-VCS-Files: sci-biology/VarScan/VarScan-2.3.7.ebuild sci-biology/VarScan/metadata.xml
X-VCS-Directories: sci-biology/VarScan/
X-VCS-Committer: mmokrejs
X-VCS-Committer-Name: Martin Mokrejs
X-VCS-Revision: 6911112e32296b390cdd2bda69aba1ae426a2031
X-VCS-Branch: master
Date: Tue, 15 Nov 2016 18:32:55 +0000 (UTC)
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commit: 6911112e32296b390cdd2bda69aba1ae426a2031
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Nov 14 23:08:02 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Nov 14 23:08:02 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6911112e
sci-biology/VarScan: remove a package skeleton, no sources available
sci-biology/VarScan/VarScan-2.3.7.ebuild | 30 ------------------------------
sci-biology/VarScan/metadata.xml | 11 -----------
2 files changed, 41 deletions(-)
diff --git a/sci-biology/VarScan/VarScan-2.3.7.ebuild b/sci-biology/VarScan/VarScan-2.3.7.ebuild
deleted file mode 100644
index f1b31c7..0000000
--- a/sci-biology/VarScan/VarScan-2.3.7.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit java-pkg-2
-
-DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., som. cp nr alterations (CNA)), SNP calls"
-HOMEPAGE="http://varscan.sourceforge.net/"
-
-# binary
-#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar
-#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar"
-SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.source.jar"
-
-LICENSE="Non-profit-OSL-3.0"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- >=virtual/jdk-1.5:*"
-RDEPEND=">=virtual/jre-1.5:*"
-
-S="${WORKDIR}"/net/sf/varscan
-
-src_compile(){
- javac *.java
-}
diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml
deleted file mode 100644
index fae01f1..0000000
--- a/sci-biology/VarScan/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">varscan</remote-id>
- </upstream>
-</pkgmetadata>