[gentoo-commits] repo/gentoo:master commit in: sci-biology/vcftools/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/vcftools/

[David Seifert]

commit:     1618e0bc8341fcb31c9a1b79c21a2a084cf282fd
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 25 10:11:30 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Sep 25 10:11:30 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1618e0bc

sci-biology/vcftools: Add missing RDEPEND on sys-libs/zlib

Package-Manager: portage-2.3.1

 sci-biology/vcftools/vcftools-0.1.14.ebuild | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/sci-biology/vcftools/vcftools-0.1.14.ebuild b/sci-biology/vcftools/vcftools-0.1.14.ebuild
index 9281435..be843a9 100644
--- a/sci-biology/vcftools/vcftools-0.1.14.ebuild
+++ b/sci-biology/vcftools/vcftools-0.1.14.ebuild
@@ -15,7 +15,8 @@ SLOT="0"
 KEYWORDS="~x86 ~amd64"
 IUSE="lapack"
 
-RDEPEND="dev-lang/perl:=
+RDEPEND="sys-libs/zlib
+	dev-lang/perl:=
 	lapack? ( virtual/lapack )"
 DEPEND="${RDEPEND}
 	virtual/pkgconfig"

[gentoo-commits] repo/gentoo:master commit in: sci-biology/vcftools/

[Andrew Ammerlaan]

commit:     dc7beed7f021c6afe109a71cd67a3cf014538a57
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 19 14:05:07 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sat Feb 19 14:05:12 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dc7beed7

sci-biology/vcftools: add version 0.1.16

Closes: https://bugs.gentoo.org/833503
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/vcftools/Manifest               |  1 +
 sci-biology/vcftools/vcftools-0.1.16.ebuild | 37 +++++++++++++++++++++++++++++
 2 files changed, 38 insertions(+)

diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest
index d54587b1a971..411610b28376 100644
--- a/sci-biology/vcftools/Manifest
+++ b/sci-biology/vcftools/Manifest
@@ -1 +1,2 @@
 DIST vcftools-0.1.14.tar.gz 342369 BLAKE2B 14be867c0be41767e2c97c8be212f3cff495c1cb6699294fb8a26ac491901599cd1e400cb80c6d609dce36584ee5defdb3b3652657bd127e0c67c5b29a842cc5 SHA512 863a16b3b20d392deba7f04310af95f1ab21be537273692aa104e22d737af2eb1bc54a768af954f06188e0500e4f7a032d1189886eb3a439b108cb8189b14eb7
+DIST vcftools-0.1.16.tar.gz 480575 BLAKE2B 5c0bf67aef8ef4705f621485df4c556f6bace190311c308f0364f3e274cf4818f56f2186905fdfb7459dc4be9664a8b1ff631e2cecd03abd7aa82dcfc7e5aa64 SHA512 c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6

diff --git a/sci-biology/vcftools/vcftools-0.1.16.ebuild b/sci-biology/vcftools/vcftools-0.1.16.ebuild
new file mode 100644
index 000000000000..b06a81dd0a1a
--- /dev/null
+++ b/sci-biology/vcftools/vcftools-0.1.16.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit autotools flag-o-matic perl-functions toolchain-funcs
+
+DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
+HOMEPAGE="http://vcftools.sourceforge.net/"
+SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz"
+
+LICENSE="LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="lapack"
+
+RDEPEND="sys-libs/zlib
+	dev-lang/perl:=
+	lapack? ( virtual/lapack )"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+src_prepare() {
+	default
+	eautoreconf
+}
+
+src_configure() {
+	perl_set_version
+
+	append-flags $($(tc-getPKG_CONFIG) --cflags lapack)
+	append-libs $($(tc-getPKG_CONFIG) --libs lapack)
+
+	econf \
+		$(use_enable lapack pca) \
+		--with-pmdir="${VENDOR_LIB#${EPREFIX}/usr}"
+}