[gentoo-commits] proj/sci:master commit in: sci-biology/msautil/

[gentoo-commits] proj/sci:master commit in: sci-biology/msautil/

[Martin Mokrejs]

commit:     a253855c9986c4de6e42d8014919225814f0e3ae
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Aug  1 14:51:20 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Aug  1 14:51:20 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a253855c

sci-biology/fas: new package, maybe public-domain license?

Package-Manager: portage-2.3.0

 sci-biology/msautil/metadata.xml       | 12 ++++++++++++
 sci-biology/msautil/msautil-1.1.ebuild | 22 ++++++++++++++++++++++
 2 files changed, 34 insertions(+)

diff --git a/sci-biology/msautil/metadata.xml b/sci-biology/msautil/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/msautil/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/msautil/msautil-1.1.ebuild b/sci-biology/msautil/msautil-1.1.ebuild
new file mode 100644
index 0000000..0d2e237
--- /dev/null
+++ b/sci-biology/msautil/msautil-1.1.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Reformat/edit FASTA files and compute simple statistics (N50, quartiles, mode)"
+HOMEPAGE="http://bioresearch.byu.edu/msa"
+SRC_URI="http://bioresearch.byu.edu/msa/${P}.tgz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_install(){
+	dobin fac fas mscore
+	dodoc README.txt
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/msautil/

[Martin Mokrejs]

commit:     c6e36f2534e6753c8365198695b5aa5f3e3d0d6e
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Aug  1 15:01:00 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Aug  1 15:01:00 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c6e36f25

sci-biology/msautil: respect CFLAGS

Package-Manager: portage-2.3.0

 sci-biology/msautil/msautil-1.1.ebuild | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/sci-biology/msautil/msautil-1.1.ebuild b/sci-biology/msautil/msautil-1.1.ebuild
index 0d2e237..5ef4dd6 100644
--- a/sci-biology/msautil/msautil-1.1.ebuild
+++ b/sci-biology/msautil/msautil-1.1.ebuild
@@ -16,6 +16,10 @@ IUSE=""
 DEPEND=""
 RDEPEND="${DEPEND}"
 
+src_prepare(){
+	for f in fac.mak fas.mak mscore.mak; do sed -e "s/OPT = -O3/OPT = ${CFLAGS}/" -i $f || die; done
+}
+
 src_install(){
 	dobin fac fas mscore
 	dodoc README.txt

[gentoo-commits] proj/sci:master commit in: sci-biology/msautil/

[Justin Lecher]

commit:     f873cdb7207ec3699b7858298e9eedc474ac497d
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 25 19:01:48 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Feb 25 19:01:48 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f873cdb7

sci-biology/msautil: QA CFLAGS, EAPI and CVS left over

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 .../{msautil-1.1.ebuild => msautil-1.1-r1.ebuild}        | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diff --git a/sci-biology/msautil/msautil-1.1.ebuild b/sci-biology/msautil/msautil-1.1-r1.ebuild
similarity index 67%
rename from sci-biology/msautil/msautil-1.1.ebuild
rename to sci-biology/msautil/msautil-1.1-r1.ebuild
index 5ef4dd63d..b30b38490 100644
--- a/sci-biology/msautil/msautil-1.1.ebuild
+++ b/sci-biology/msautil/msautil-1.1-r1.ebuild
@@ -1,8 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: $
 
-EAPI=5
+EAPI=6
+
+inherit toolchain-funcs
 
 DESCRIPTION="Reformat/edit FASTA files and compute simple statistics (N50, quartiles, mode)"
 HOMEPAGE="http://bioresearch.byu.edu/msa"
@@ -13,11 +14,12 @@ SLOT="0"
 KEYWORDS=""
 IUSE=""
 
-DEPEND=""
-RDEPEND="${DEPEND}"
-
 src_prepare(){
-	for f in fac.mak fas.mak mscore.mak; do sed -e "s/OPT = -O3/OPT = ${CFLAGS}/" -i $f || die; done
+	sed \
+		-e "s/OPT = -O3/OPT = ${CFLAGS}/" \
+		-i fac.mak fas.mak mscore.mak || die
+	tc-export CC
+	default
 }
 
 src_install(){

[gentoo-commits] proj/sci:master commit in: sci-biology/msautil/

[Andrew Ammerlaan]

commit:     70f83977ed250416b5c75a1ae23ceb58cab62263
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Feb  2 09:38:15 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Feb  2 09:38:15 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=70f83977

sci-biology/msautil: EAPI bump

added keywords, works for me

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/msautil/msautil-1.1-r1.ebuild | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/sci-biology/msautil/msautil-1.1-r1.ebuild b/sci-biology/msautil/msautil-1.1-r1.ebuild
index b30b38490..572d8abe5 100644
--- a/sci-biology/msautil/msautil-1.1-r1.ebuild
+++ b/sci-biology/msautil/msautil-1.1-r1.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 inherit toolchain-funcs
 
@@ -11,8 +11,7 @@ SRC_URI="http://bioresearch.byu.edu/msa/${P}.tgz"
 
 LICENSE="all-rights-reserved"
 SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
 
 src_prepare(){
 	sed \