From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id B6304138206 for ; Mon, 1 Aug 2016 12:44:11 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E385621C039; Mon, 1 Aug 2016 12:44:10 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 7A2E221C039 for ; Mon, 1 Aug 2016 12:44:10 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C5774340EAB for ; Mon, 1 Aug 2016 12:44:08 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D47121B9B for ; Mon, 1 Aug 2016 12:44:05 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1470055439.29d62487d6b5776402688fee78b2dbb47cdf3e5c.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/SnpEff/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/SnpEff/SnpEff-4.2.ebuild X-VCS-Directories: sci-biology/SnpEff/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 29d62487d6b5776402688fee78b2dbb47cdf3e5c X-VCS-Branch: master Date: Mon, 1 Aug 2016 12:44:05 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 9077e7e2-80b7-4793-86f1-6f8fef8b2528 X-Archives-Hash: 0501a5131ef66c45549219a5827ece16 commit: 29d62487d6b5776402688fee78b2dbb47cdf3e5c Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon Aug 1 12:43:59 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Aug 1 12:43:59 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=29d62487 sci-biology/SnpEff: re-order dependencies, back to EAPI=5 Package-Manager: portage-2.3.0 sci-biology/SnpEff/SnpEff-4.2.ebuild | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/sci-biology/SnpEff/SnpEff-4.2.ebuild b/sci-biology/SnpEff/SnpEff-4.2.ebuild index 9272b63..7cdd51c 100644 --- a/sci-biology/SnpEff/SnpEff-4.2.ebuild +++ b/sci-biology/SnpEff/SnpEff-4.2.ebuild @@ -2,7 +2,7 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=6 +EAPI=5 inherit java-pkg-2 java-ant-2 @@ -18,12 +18,13 @@ KEYWORDS="~amd64" IUSE="" # https://github.com/pcingola/SnpEff/blob/master/README_release.txt -DEPEND=" +RDEPEND=" >=virtual/jre-1.7:* dev-java/maven-bin:* dev-java/antlr:*" -RDEPEND="${DEPEND} - >=virtual/jdk-1.7:*" +DEPEND="${RDEPEND} + >=virtual/jdk-1.7:* + dev-java/ant-core" S="${WORKDIR}" @@ -36,7 +37,7 @@ src_install(){ mkdir -p "${D}"/usr/share || die # but portage does not install the .* files and subdirs, grr! unzip \ - "${DISTDIR}"/snpEff_v4_1e_core.zip -d "${D}"/usr/share \ + "${DISTDIR}"/snpEff_v4_2_core.zip -d "${D}"/usr/share \ || die "failed to unzip ${DISTDIR}/snpEff_v4_2_core.zip" sed \ -e 's#$HOME/tools/picard/#/usr/share/picard/lib/#' \