From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 6A535138206 for ; Mon, 1 Aug 2016 12:44:12 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6296F21C043; Mon, 1 Aug 2016 12:44:11 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id EC68321C043 for ; Mon, 1 Aug 2016 12:44:10 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 97917340EAC for ; Mon, 1 Aug 2016 12:44:08 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id C10687CD for ; Mon, 1 Aug 2016 12:44:05 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1470055389.51323d9c686f7a9bd5ec8b04d003353f8829e520.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ensembl-tools/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ensembl-tools/ensembl-tools-85.ebuild X-VCS-Directories: sci-biology/ensembl-tools/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 51323d9c686f7a9bd5ec8b04d003353f8829e520 X-VCS-Branch: master Date: Mon, 1 Aug 2016 12:44:05 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 6b0a10be-5f99-459d-85ab-c7b93e667c9a X-Archives-Hash: 3e496c755129e3e45157a802af7cadf5 commit: 51323d9c686f7a9bd5ec8b04d003353f8829e520 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon Aug 1 12:43:09 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Aug 1 12:43:09 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=51323d9c sci-biology/ensembl-tools: add more dependencies Package-Manager: portage-2.3.0 sci-biology/ensembl-tools/ensembl-tools-85.ebuild | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild index 0ed40bb..ffa1b63 100644 --- a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild +++ b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild @@ -17,7 +17,8 @@ SLOT="0" KEYWORDS="" # BUG: needs Bio::EnsEMBL::Registry IUSE="" -DEPEND="" +DEPEND="dev-perl/File-Copy-Recursive + dev-perl/Archive-Extract" #DEPEND="dev-perl/Perl-XS # dev-perl/Bio-DB-HTS" RDEPEND="${DEPEND}" @@ -28,7 +29,8 @@ src_install(){ perl_set_version insinto ${VENDOR_LIB}/${PN} cd scripts/variant_effect_predictor || die - perl INSTALL.pl --DESTDIR="${EPREFIX}"/"${DESTDIR}" --AUTO ac + # FIXME: INSTALL.pl does not exit upon error + ./INSTALL.pl --DESTDIR="${DESTDIR}"/"${EPREFIX}" --AUTO=ac || die newdoc README.txt variant_effect_predictor.txt cd ../../scripts/region_reporter || die dobin *.pl