From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/SnpEff/
Date: Wed, 27 Jul 2016 08:56:56 +0000 (UTC) [thread overview]
Message-ID: <1469609800.84e0f638f095e67e26939f1f33c16c115745edca.mmokrejs@gentoo> (raw)
commit: 84e0f638f095e67e26939f1f33c16c115745edca
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jul 27 08:56:40 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jul 27 08:56:40 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=84e0f638
sci-biology/SnpEff: version bump
Package-Manager: portage-2.2.28
sci-biology/SnpEff/{SnpEff-4.1e.ebuild => SnpEff-4.2.ebuild} | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/SnpEff/SnpEff-4.1e.ebuild b/sci-biology/SnpEff/SnpEff-4.2.ebuild
similarity index 92%
rename from sci-biology/SnpEff/SnpEff-4.1e.ebuild
rename to sci-biology/SnpEff/SnpEff-4.2.ebuild
index 7ba4236..ecdc205 100644
--- a/sci-biology/SnpEff/SnpEff-4.1e.ebuild
+++ b/sci-biology/SnpEff/SnpEff-4.2.ebuild
@@ -9,7 +9,7 @@ inherit java-pkg-2 java-ant-2
DESCRIPTION="Annotate SNP changes and predict their effect"
HOMEPAGE="http://snpeff.sourceforge.net"
SRC_URI="
- http://sourceforge.net/projects/snpeff/files/snpEff_v4_1e_core.zip
+ http://sourceforge.net/projects/snpeff/files/snpEff_v4_2_core.zip
http://snpeff.sourceforge.net/SnpSift.html -> ${P}.html"
LICENSE="LGPL-3"
@@ -37,7 +37,7 @@ src_install(){
# but portage does not install the .* files and subdirs, grr!
unzip \
"${DISTDIR}"/snpEff_v4_1e_core.zip -d "${D}"/usr/share \
- || die "failed to unzip ${DISTDIR}/snpEff_v4_1e_core.zip"
+ || die "failed to unzip ${DISTDIR}/snpEff_v4_2_core.zip"
sed \
-e 's#$HOME/tools/picard/#/usr/share/picard/lib/#' \
-i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
next reply other threads:[~2016-07-27 8:57 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-07-27 8:56 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2021-01-24 13:54 [gentoo-commits] proj/sci:master commit in: sci-biology/SnpEff/ Andrew Ammerlaan
2017-02-20 22:50 Martin Mokrejs
2016-12-07 10:15 Martin Mokrejs
2016-12-07 10:00 Martin Mokrejs
2016-08-01 12:44 Martin Mokrejs
2016-07-31 22:15 Martin Mokrejs
2016-02-14 17:32 Justin Lecher
2016-02-10 13:31 Martin Mokrejs
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