From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id DBA171382FE for ; Tue, 12 Jul 2016 21:50:53 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 13E5FE0BA4; Tue, 12 Jul 2016 21:50:49 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id B4A96E0BA4 for ; Tue, 12 Jul 2016 21:50:47 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 5115E340C9D for ; Tue, 12 Jul 2016 21:50:46 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 721BB2416 for ; Tue, 12 Jul 2016 21:50:43 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1468359727.d0811884dba63b23093aa0cf580171e4ba51a36f.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: dev-java/htsjdk/ X-VCS-Repository: proj/sci X-VCS-Files: dev-java/htsjdk/htsjdk-2.5.1.ebuild X-VCS-Directories: dev-java/htsjdk/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: d0811884dba63b23093aa0cf580171e4ba51a36f X-VCS-Branch: master Date: Tue, 12 Jul 2016 21:50:43 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 749be940-b389-494f-a4c7-8a70f0d7c0f6 X-Archives-Hash: ec1458db4b7d32d0d9628ac151c51ed9 commit: d0811884dba63b23093aa0cf580171e4ba51a36f Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue Jul 12 21:42:07 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue Jul 12 21:42:07 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d0811884 dev-java/htsjdk: make gradle use relocated $HOME/.gradle/ inside sanbox paths This dies later because .git/ directory does not exist (probably $HOME/.git/ was looked up). Package-Manager: portage-2.2.28 dev-java/htsjdk/htsjdk-2.5.1.ebuild | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/dev-java/htsjdk/htsjdk-2.5.1.ebuild b/dev-java/htsjdk/htsjdk-2.5.1.ebuild index b63c0d2..0f1e162 100644 --- a/dev-java/htsjdk/htsjdk-2.5.1.ebuild +++ b/dev-java/htsjdk/htsjdk-2.5.1.ebuild @@ -36,7 +36,9 @@ java_prepare(){ } src_compile(){ - ./gradlew build || die + # work around gradle writing $HOME/.gradle + # https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965 + GRADLE_USER_HOME="${WORKDIR}" ./gradlew build || die } src_install() {