From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 09D5E1382FE for ; Tue, 12 Jul 2016 16:18:44 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id CF37721C075; Tue, 12 Jul 2016 16:18:40 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 4A8B521C075 for ; Tue, 12 Jul 2016 16:18:39 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 26806340E0E for ; Tue, 12 Jul 2016 16:18:39 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E6F2F2444 for ; Tue, 12 Jul 2016 16:18:34 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1468340170.3a228937d5822bfdefd17539f8089eac13f427ef.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/conrad/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/conrad/conrad-1.ebuild X-VCS-Directories: sci-biology/conrad/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 3a228937d5822bfdefd17539f8089eac13f427ef X-VCS-Branch: master Date: Tue, 12 Jul 2016 16:18:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: e94a218c-0586-4eba-b727-7e06840c16dd X-Archives-Hash: aee319e33dba1ec2d1b0d6ab36aea1d0 commit: 3a228937d5822bfdefd17539f8089eac13f427ef Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue Jul 12 16:16:10 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue Jul 12 16:16:10 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3a228937 sci-biology/conrad: document more issues with the ebuild Package-Manager: portage-2.2.28 sci-biology/conrad/conrad-1.ebuild | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/sci-biology/conrad/conrad-1.ebuild b/sci-biology/conrad/conrad-1.ebuild index f9e19a1..983be76 100644 --- a/sci-biology/conrad/conrad-1.ebuild +++ b/sci-biology/conrad/conrad-1.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit java-pkg-2 java-ant-2 -DESCRIPTION="Gene predictor using ab initio and ad hoc evidence (RNA-Seq, BLAST) on gDNA" +DESCRIPTION="Ab initio- and ad hoc evidence-based (RNA-Seq, BLAST) gene/ORF predictor" HOMEPAGE="http://www.broadinstitute.org/annotation/conrad http://sourceforge.net/projects/conradcrf" SRC_URI="http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip" @@ -16,17 +16,20 @@ SLOT="0" KEYWORDS="" IUSE="" +# upstream binaries do not work with oracle-java-8 RDEPEND=" >=virtual/jre-1.5:* + <=virtual/jre-1.7:* dev-java/commons-logging >=dev-java/commons-lang-2.1:* dev-java/colt dev-java/dom4j " # spring # see bug #97004 - # LBFGS + # dev-java/LBFGS # LBFGS is a numericla library we use internally for the solver DEPEND="${RDEPEND} >=virtual/jdk-1.5:* + <=virtual/jdk-1.7:* dev-java/ant-core >=dev-java/jfreechart-1.0.3 >=dev-java/jcommon-1.0.6