From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 354F91382FE for ; Tue, 12 Jul 2016 19:57:29 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 0509721C0A2; Tue, 12 Jul 2016 19:57:15 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id CA4A621C099 for ; Tue, 12 Jul 2016 19:57:13 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id AE158340EF4 for ; Tue, 12 Jul 2016 19:57:12 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id A781A2452 for ; Tue, 12 Jul 2016 19:57:08 +0000 (UTC) From: "Marius Brehler" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Marius Brehler" Message-ID: <1468082121.a4d74bf5cf42a039a93e81264382eb3bb159b052.marbre@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-mathematics/petsc/ X-VCS-Repository: proj/sci X-VCS-Files: sci-mathematics/petsc/petsc-3.6.0.ebuild sci-mathematics/petsc/petsc-3.6.3.ebuild sci-mathematics/petsc/petsc-3.7.0.ebuild X-VCS-Directories: sci-mathematics/petsc/ X-VCS-Committer: marbre X-VCS-Committer-Name: Marius Brehler X-VCS-Revision: a4d74bf5cf42a039a93e81264382eb3bb159b052 X-VCS-Branch: master Date: Tue, 12 Jul 2016 19:57:08 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 3e85d49d-100b-43bc-bed2-af59c7b59d6b X-Archives-Hash: 022a9d4104469bbcaf0a4835bbf9193c commit: a4d74bf5cf42a039a93e81264382eb3bb159b052 Author: Matthias Maier gentoo org> AuthorDate: Sat Jul 9 16:35:21 2016 +0000 Commit: Marius Brehler linux sungazer de> CommitDate: Sat Jul 9 16:35:21 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4d74bf5 sci-mathematics/petsc: drop old Package-Manager: portage-2.2.28 sci-mathematics/petsc/petsc-3.6.0.ebuild | 247 ------------------------------ sci-mathematics/petsc/petsc-3.6.3.ebuild | 247 ------------------------------ sci-mathematics/petsc/petsc-3.7.0.ebuild | 255 ------------------------------- 3 files changed, 749 deletions(-) diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild deleted file mode 100644 index 58ff3bd..0000000 --- a/sci-mathematics/petsc/petsc-3.6.0.ebuild +++ /dev/null @@ -1,247 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator - -MY_P="${PN}-$(replace_version_separator _ -)" - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="http://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz" - -LICENSE="petsc" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi mumps scotch sparse superlu threads X" -# Failed: imagemagick metis - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - hdf5? ( mpi ) - hypre? ( cxx mpi ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - ^^ ( hypre superlu ) -" -# imagemagick? ( X ) - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( sci-libs/superlu ) - X? ( x11-libs/libX11 ) -" -# metis? ( sci-libs/parmetis ) -# imagemagick? ( media-gfx/imagemagick ) - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" -# cmake is used for parallel building -# in some configuration setups, legacy build is used (slow) - -# -# PETSc does not want its Makefiles to be invoked with anything higher than -# -j1. The underlying build system does automatically invoke a parallel -# build. This might not be what you want, but *hey* not your choice. -# -MAKEOPTS="${MAKEOPTS} -j1" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - epatch \ - "${FILESDIR}"/${P%_*}-disable-rpath.patch \ - "${FILESDIR}"/${P%_*}-fix_sandbox_violation.patch - - sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - - # petsc uses --with-blah=1 and --with-blah=0 to en/disable options - petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" - } - # add external library: - # petsc_with use_flag libname libdir - # petsc_with use_flag libname include linking_libs - petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} - } - - # select between configure options depending on use flag - petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" - } - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on Cxx builds is enabled if possible - # i.e. when not using complex scalars - # (no complex type for both available at the same time) - - # run petsc configure script - econf \ - scrollOutput=1 \ - CFLAGS="${CFLAGS}" \ - CXXFLAGS="${CXXFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake=cmake \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(petsc_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(petsc_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(petsc_with X x) \ - $(petsc_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(petsc_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(petsc_with boost) \ - $(petsc_with fftw) - -# not yet tested: -# python bindings, netcdf, fftw - -# failed dependencies, perhaps fixed in upstream soon: -# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2) -# $(petsc_with imagemagick imagemagick \ -# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \ -# $(petsc_enable threads pthreadclasses) \ -} - -src_install() { - # petsc install structure is very different from - # installing headers to /usr/include/petsc and lib to /usr/lib - # it also installs many unneeded executables and scripts - # so manual install is easier than cleanup after "emake install" - insinto /usr/include/${PN} - doins include/*.h* - insinto /usr/include/${PN}/${PETSC_ARCH}/include - doins ${PETSC_ARCH}/include/* - if use fortran; then - insinto /usr/include/${PN}/finclude - doins -r include/${PN}/finclude/* - fi - if ! use mpi ; then - insinto /usr/include/${PN}/mpiuni - doins include/mpiuni/*.h - fi - insinto /usr/include/${PN}/conf - doins lib/${PN}/conf/{variables,rules,test} - insinto /usr/include/${PN}/${PETSC_ARCH}/conf - doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db} - insinto /usr/include/${PN}/private - doins include/${PN}/private/*.h - - # fix configuration files: replace "${S}" by installed location - sed -i \ - -e "s:"${S}"::g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die - sed -i \ - -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \ - -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die - sed -i \ - -e "s:usr/lib:usr/$(get_libdir):g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die - - # add information about installation directory and - # PETSC_ARCH to environmental variables - cat >> 99petsc <<- EOF - PETSC_ARCH=${PETSC_ARCH} - PETSC_DIR=${EPREFIX}/usr/include/${PN} - EOF - doenvd 99petsc - - dolib.so ${PETSC_ARCH}/lib/*.so - dolib.so ${PETSC_ARCH}/lib/*.so.* - - if use doc ; then - einfo "installing documentation (this could take a while)" - dodoc docs/manual.pdf - dohtml -r docs/*.html docs/changes docs/manualpages - fi -} diff --git a/sci-mathematics/petsc/petsc-3.6.3.ebuild b/sci-mathematics/petsc/petsc-3.6.3.ebuild deleted file mode 100644 index 87537cb..0000000 --- a/sci-mathematics/petsc/petsc-3.6.3.ebuild +++ /dev/null @@ -1,247 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator - -MY_P="${PN}-$(replace_version_separator _ -)" - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="http://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz" - -LICENSE="petsc" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi mumps scotch sparse superlu threads X" -# Failed: imagemagick metis - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - hdf5? ( mpi ) - hypre? ( cxx mpi ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - ^^ ( hypre superlu ) -" -# imagemagick? ( X ) - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( sci-libs/superlu ) - X? ( x11-libs/libX11 ) -" -# metis? ( sci-libs/parmetis ) -# imagemagick? ( media-gfx/imagemagick ) - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" -# cmake is used for parallel building -# in some configuration setups, legacy build is used (slow) - -# -# PETSc does not want its Makefiles to be invoked with anything higher than -# -j1. The underlying build system does automatically invoke a parallel -# build. This might not be what you want, but *hey* not your choice. -# -MAKEOPTS="${MAKEOPTS} -j1" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-3.6.0-disable-rpath.patch \ - "${FILESDIR}"/${PN}-3.6.0-fix_sandbox_violation.patch - - sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - - # petsc uses --with-blah=1 and --with-blah=0 to en/disable options - petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" - } - # add external library: - # petsc_with use_flag libname libdir - # petsc_with use_flag libname include linking_libs - petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} - } - - # select between configure options depending on use flag - petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" - } - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on Cxx builds is enabled if possible - # i.e. when not using complex scalars - # (no complex type for both available at the same time) - - # run petsc configure script - econf \ - scrollOutput=1 \ - CFLAGS="${CFLAGS}" \ - CXXFLAGS="${CXXFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake=cmake \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(petsc_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(petsc_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(petsc_with X x) \ - $(petsc_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(petsc_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(petsc_with boost) \ - $(petsc_with fftw) - -# not yet tested: -# python bindings, netcdf, fftw - -# failed dependencies, perhaps fixed in upstream soon: -# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2) -# $(petsc_with imagemagick imagemagick \ -# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \ -# $(petsc_enable threads pthreadclasses) \ -} - -src_install() { - # petsc install structure is very different from - # installing headers to /usr/include/petsc and lib to /usr/lib - # it also installs many unneeded executables and scripts - # so manual install is easier than cleanup after "emake install" - insinto /usr/include/${PN} - doins include/*.h* - insinto /usr/include/${PN}/${PETSC_ARCH}/include - doins ${PETSC_ARCH}/include/* - if use fortran; then - insinto /usr/include/${PN}/finclude - doins -r include/${PN}/finclude/* - fi - if ! use mpi ; then - insinto /usr/include/${PN}/mpiuni - doins include/mpiuni/*.h - fi - insinto /usr/include/${PN}/conf - doins lib/${PN}/conf/{variables,rules,test} - insinto /usr/include/${PN}/${PETSC_ARCH}/conf - doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db} - insinto /usr/include/${PN}/private - doins include/${PN}/private/*.h - - # fix configuration files: replace "${S}" by installed location - sed -i \ - -e "s:"${S}"::g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die - sed -i \ - -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \ - -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die - sed -i \ - -e "s:usr/lib:usr/$(get_libdir):g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die - - # add information about installation directory and - # PETSC_ARCH to environmental variables - cat >> 99petsc <<- EOF - PETSC_ARCH=${PETSC_ARCH} - PETSC_DIR=${EPREFIX}/usr/include/${PN} - EOF - doenvd 99petsc - - dolib.so ${PETSC_ARCH}/lib/*.so - dolib.so ${PETSC_ARCH}/lib/*.so.* - - if use doc ; then - einfo "installing documentation (this could take a while)" - dodoc docs/manual.pdf - dohtml -r docs/*.html docs/changes docs/manualpages - fi -} diff --git a/sci-mathematics/petsc/petsc-3.7.0.ebuild b/sci-mathematics/petsc/petsc-3.7.0.ebuild deleted file mode 100644 index bcf8cc5..0000000 --- a/sci-mathematics/petsc/petsc-3.7.0.ebuild +++ /dev/null @@ -1,255 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit eutils flag-o-matic fortran-2 python-any-r1 toolchain-funcs versionator - -MY_P="${PN}-$(replace_version_separator _ -)" - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="http://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${MY_P}.tar.gz" - -LICENSE="petsc" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi mumps scotch sparse superlu threads X" -# Failed: imagemagick metis - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - hdf5? ( mpi ) - hypre? ( cxx mpi ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - ^^ ( hypre superlu ) -" -# imagemagick? ( X ) - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( sci-libs/superlu ) - X? ( x11-libs/libX11 ) -" -# metis? ( sci-libs/parmetis ) -# imagemagick? ( media-gfx/imagemagick ) - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" -# cmake is used for parallel building -# in some configuration setups, legacy build is used (slow) - -# -# PETSc does not want its Makefiles to be invoked with anything higher than -# -j1. The underlying build system does automatically invoke a parallel -# build. This might not be what you want, but *hey* not your choice. -# -# V=1 enables verbose output with full compiler and linker invocation -# -MAKEOPTS="${MAKEOPTS} -j1 V=1" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-disable-rpath.patch \ - "${FILESDIR}"/${P}-fix_sandbox_violation.patch - - sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - - # petsc uses --with-blah=1 and --with-blah=0 to en/disable options - petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" - } - # add external library: - # petsc_with use_flag libname libdir - # petsc_with use_flag libname include linking_libs - petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} - } - - # select between configure options depending on use flag - petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" - } - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on Cxx builds is enabled if possible - # i.e. when not using complex scalars - # (no complex type for both available at the same time) - - # run petsc configure script - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake=cmake \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(petsc_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(petsc_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(petsc_with X x) \ - $(petsc_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(petsc_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(petsc_with boost) \ - $(petsc_with fftw) - -# not yet tested: -# python bindings, netcdf, fftw - -# failed dependencies, perhaps fixed in upstream soon: -# $(petsc_with metis parmetis) \ # needs metis too (>=5.0.2) -# $(petsc_with imagemagick imagemagick \ -# /usr/include/ImageMagick $($(tc-getPKG_CONFIG) --libs MagickCore)) \ -# $(petsc_enable threads pthreadclasses) \ -} - -src_install() { - # petsc install structure is very different from - # installing headers to /usr/include/petsc and lib to /usr/lib - # it also installs many unneeded executables and scripts - # so manual install is easier than cleanup after "emake install" - insinto /usr/include/${PN} - doins include/*.h* - insinto /usr/include/${PN}/${PETSC_ARCH}/include - doins ${PETSC_ARCH}/include/* - if use fortran; then - insinto /usr/include/${PN}/finclude - doins -r include/${PN}/finclude/* - fi - if ! use mpi ; then - insinto /usr/include/${PN}/mpiuni - doins include/mpiuni/*.h - fi - insinto /usr/include/${PN}/conf - doins lib/${PN}/conf/{variables,rules,test} - insinto /usr/include/${PN}/${PETSC_ARCH}/conf - doins ${PETSC_ARCH}/lib/${PN}/conf/{petscrules,petscvariables,RDict.db} - insinto /usr/include/${PN}/private - doins include/${PN}/private/*.h - - # fix configuration files: replace "${S}" by installed location - sed -i \ - -e "s:"${S}"::g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die - sed -i \ - -e "s:-I/include:-I${EPREFIX}/usr/include/${PN}:g" \ - -e "s:-I/linux-gnu-cxx-opt/include:-I${EPREFIX}/usr/include/${PN}/${PETSC_ARCH}/include/:g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/conf/petscvariables || die - sed -i \ - -e "s:usr/lib:usr/$(get_libdir):g" \ - "${ED}"/usr/include/${PN}/${PETSC_ARCH}/include/petscconf.h || die - - # fix the include path of petscvariables in lib/${PN}/conf/variables - # bug #559172 - sed -i -e 's#lib/petsc/conf/#conf/#g' \ - "${ED}"/usr/include/${PN}/conf/variables || die - - # add information about installation directory and - # PETSC_ARCH to environmental variables - cat >> 99petsc <<- EOF - PETSC_ARCH=${PETSC_ARCH} - PETSC_DIR=${EPREFIX}/usr/include/${PN} - EOF - doenvd 99petsc - - dolib.so ${PETSC_ARCH}/lib/*.so - dolib.so ${PETSC_ARCH}/lib/*.so.* - - if use doc ; then - einfo "installing documentation (this could take a while)" - dodoc docs/manual.pdf - dohtml -r docs/*.html docs/changes docs/manualpages - fi -}