From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 520351382DE for ; Fri, 1 Jul 2016 12:33:10 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 260C3E0B85; Fri, 1 Jul 2016 12:33:08 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id C9B43E0B85 for ; Fri, 1 Jul 2016 12:33:07 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E5730340E8E for ; Fri, 1 Jul 2016 12:33:05 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E670723F1 for ; Fri, 1 Jul 2016 12:33:03 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1467376371.65cbf3d51c23c49ac206a0b38f0f94b0a2546d56.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/fsa/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/fsa/fsa-1.15.9.ebuild X-VCS-Directories: sci-biology/fsa/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 65cbf3d51c23c49ac206a0b38f0f94b0a2546d56 X-VCS-Branch: master Date: Fri, 1 Jul 2016 12:33:03 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 82d6c6ca-5714-429d-baeb-9002a8d22be6 X-Archives-Hash: 99189b12ecc31090684832facc8e2422 commit: 65cbf3d51c23c49ac206a0b38f0f94b0a2546d56 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Jul 1 12:32:51 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Jul 1 12:32:51 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=65cbf3d5 sci-biology/fsa: fix license, document optional packages, add DEPEND on java-config Package-Manager: portage-2.2.28 sci-biology/fsa/fsa-1.15.9.ebuild | 18 ++++++++++++++++-- 1 file changed, 16 insertions(+), 2 deletions(-) diff --git a/sci-biology/fsa/fsa-1.15.9.ebuild b/sci-biology/fsa/fsa-1.15.9.ebuild index 879a1c0..d37d56b 100644 --- a/sci-biology/fsa/fsa-1.15.9.ebuild +++ b/sci-biology/fsa/fsa-1.15.9.ebuild @@ -10,10 +10,24 @@ DESCRIPTION="Distance-based probabilistic multiple sequence alignment algo for D HOMEPAGE="http://fsa.sourceforge.net" SRC_URI="http://downloads.sourceforge.net/project/fsa/"${P}".tar.gz" -LICENSE="GPL-2" +LICENSE="GPL-3+" SLOT="0" KEYWORDS="" IUSE="" -DEPEND="" +DEPEND="dev-java/java-config" RDEPEND="${DEPEND}" + +# needs java for fsa-1.15.9/display/ processing: +# jar cmf mad/manifest.mf mad.jar \ +# -C . mad \ +# -C . JMF-2.1.1e/lib/jmf.jar \ +# -C . jai-1_1_3/lib/jai_core.jar \ +# -C . jai-1_1_3/lib/jai_codec.jar +# * Home for VM '' does not exist: +# * Invalid System VM: + +pkg_postinst(){ + einfo "Optionally you may want to install sci-biology/mummer and" + einfo "sci-biology/exonerate" +}