* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2016-04-10 12:39 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-04-10 12:39 UTC (permalink / raw
To: gentoo-commits
commit: d86874f2150d71241ce03d16f69736ccb5d72da3
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 10 12:36:05 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 10 12:36:05 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d86874f2
sci-biology/assembly-stats: new package
Package-Manager: portage-2.2.28
.../assembly-stats/assembly-stats-9999.ebuild | 22 ++++++++++++++++++++++
sci-biology/assembly-stats/metadata.xml | 12 ++++++++++++
2 files changed, 34 insertions(+)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
new file mode 100644
index 0000000..895aa9a
--- /dev/null
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit git-r3 cmake-utils
+
+DESCRIPTION="Assembly statistics (min, max, sum, N50, N90, count gaps and Ns)"
+HOMEPAGE="https://github.com/martinghunt/assembly-stats"
+EGIT_REPO_URI="https://github.com/martinghunt/assembly-stats.git"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=">=dev-cpp/gtest-1.7.0"
+RDEPEND="${DEPEND}"
+
+# installs into /usr/local/bin
+# should not even try to compile bundled gtest
diff --git a/sci-biology/assembly-stats/metadata.xml b/sci-biology/assembly-stats/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/assembly-stats/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2016-06-29 13:54 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-06-29 13:54 UTC (permalink / raw
To: gentoo-commits
commit: 7b6d027acdacbcedae9b428a4ae8a83134a58263
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 29 13:54:11 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 29 13:54:11 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b6d027a
sci-biology/assembly-stats: respect EPREFIX
Package-Manager: portage-2.2.28
sci-biology/assembly-stats/assembly-stats-9999.ebuild | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
index 895aa9a..442f3db 100644
--- a/sci-biology/assembly-stats/assembly-stats-9999.ebuild
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -20,3 +20,8 @@ RDEPEND="${DEPEND}"
# installs into /usr/local/bin
# should not even try to compile bundled gtest
+
+src_prepare(){
+ eapply_user
+ sed -e 's#/usr/local/bin#${EPREFIX}/usr/bin#' -i CMakeLists.txt || die
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2016-06-29 13:57 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-06-29 13:57 UTC (permalink / raw
To: gentoo-commits
commit: c3337f0e8f4f84c026a71978a4c0cf8e444f4ae9
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 29 13:56:55 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 29 13:56:55 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3337f0e
sci-biology/assembly-stats: remove obsolete comment
Package-Manager: portage-2.2.28
sci-biology/assembly-stats/assembly-stats-9999.ebuild | 4 +---
1 file changed, 1 insertion(+), 3 deletions(-)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
index 442f3db..b60e7a9 100644
--- a/sci-biology/assembly-stats/assembly-stats-9999.ebuild
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -18,9 +18,7 @@ IUSE=""
DEPEND=">=dev-cpp/gtest-1.7.0"
RDEPEND="${DEPEND}"
-# installs into /usr/local/bin
-# should not even try to compile bundled gtest
-
+# TODO: should not even try to compile bundled gtest
src_prepare(){
eapply_user
sed -e 's#/usr/local/bin#${EPREFIX}/usr/bin#' -i CMakeLists.txt || die
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2016-07-01 9:05 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-07-01 9:05 UTC (permalink / raw
To: gentoo-commits
commit: ed820fc096c163d5cefb9c19fb59f89c1afac5b0
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 1 09:05:22 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 1 09:05:22 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ed820fc0
sci-biology/assembly-stats: fix EPREFIX/usr/local/bin to EPREFIX/usr/bin
Package-Manager: portage-2.2.28
sci-biology/assembly-stats/assembly-stats-9999.ebuild | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
index b60e7a9..b4b77e0 100644
--- a/sci-biology/assembly-stats/assembly-stats-9999.ebuild
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -23,3 +23,9 @@ src_prepare(){
eapply_user
sed -e 's#/usr/local/bin#${EPREFIX}/usr/bin#' -i CMakeLists.txt || die
}
+
+src_install(){
+ default
+ mv "${D}"/usr/bin/assembly-stats "${D}"/"${EPREFIX}"/usr/bin/ || die
+ rmdir "${D}"/usr/bin || die
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2016-07-01 9:09 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-07-01 9:09 UTC (permalink / raw
To: gentoo-commits
commit: e5b76f549cc069b8c79d7df124aef88b905c1033
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 1 09:08:59 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 1 09:08:59 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e5b76f54
sci-biology/assembly-stats: chnage quotes
Package-Manager: portage-2.2.28
sci-biology/assembly-stats/assembly-stats-9999.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
index b4b77e0..dffa59d 100644
--- a/sci-biology/assembly-stats/assembly-stats-9999.ebuild
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -21,7 +21,7 @@ RDEPEND="${DEPEND}"
# TODO: should not even try to compile bundled gtest
src_prepare(){
eapply_user
- sed -e 's#/usr/local/bin#${EPREFIX}/usr/bin#' -i CMakeLists.txt || die
+ sed -e "s#/usr/local/bin#${EPREFIX}/usr/bin#" -i CMakeLists.txt || die
}
src_install(){
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2016-07-01 9:24 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-07-01 9:24 UTC (permalink / raw
To: gentoo-commits
commit: 423fa9e9e83b14b89c31adcae3107b04f15709b9
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 1 09:24:29 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 1 09:24:29 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=423fa9e9
sci-biology/assembly-stats: switch back to EAPI=5
Package-Manager: portage-2.2.28
sci-biology/assembly-stats/assembly-stats-9999.ebuild | 8 +++-----
1 file changed, 3 insertions(+), 5 deletions(-)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
index dffa59d..7c1024c 100644
--- a/sci-biology/assembly-stats/assembly-stats-9999.ebuild
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=6
+EAPI=5
inherit git-r3 cmake-utils
@@ -20,12 +20,10 @@ RDEPEND="${DEPEND}"
# TODO: should not even try to compile bundled gtest
src_prepare(){
- eapply_user
sed -e "s#/usr/local/bin#${EPREFIX}/usr/bin#" -i CMakeLists.txt || die
}
src_install(){
- default
- mv "${D}"/usr/bin/assembly-stats "${D}"/"${EPREFIX}"/usr/bin/ || die
- rmdir "${D}"/usr/bin || die
+ dobin ../assembly-stats-9999_build/assembly-stats
+ dodoc README.md
}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/assembly-stats/
@ 2021-01-24 13:58 Andrew Ammerlaan
0 siblings, 0 replies; 7+ messages in thread
From: Andrew Ammerlaan @ 2021-01-24 13:58 UTC (permalink / raw
To: gentoo-commits
commit: 51579bc7b51fe2fe1696b3e76ec82d12e1e0cc9e
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sun Jan 24 13:58:17 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sun Jan 24 13:58:17 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=51579bc7
sci-biology/assembly-stats: cmake-utils --> cmake, fix install
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/assembly-stats/assembly-stats-9999.ebuild | 13 ++++---------
1 file changed, 4 insertions(+), 9 deletions(-)
diff --git a/sci-biology/assembly-stats/assembly-stats-9999.ebuild b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
index 4245707f7..86727eab1 100644
--- a/sci-biology/assembly-stats/assembly-stats-9999.ebuild
+++ b/sci-biology/assembly-stats/assembly-stats-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit git-r3 cmake-utils
+inherit git-r3 cmake
DESCRIPTION="Assembly statistics (min, max, sum, N50, N90, count gaps and Ns)"
HOMEPAGE="https://github.com/martinghunt/assembly-stats"
@@ -12,7 +12,6 @@ EGIT_REPO_URI="https://github.com/martinghunt/assembly-stats.git"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
-IUSE=""
DEPEND=">=dev-cpp/gtest-1.7.0"
RDEPEND="${DEPEND}"
@@ -20,9 +19,5 @@ RDEPEND="${DEPEND}"
# TODO: should not even try to compile bundled gtest
src_prepare(){
sed -e "s#/usr/local/bin#${EPREFIX}/usr/bin#" -i CMakeLists.txt || die
-}
-
-src_install(){
- dobin ../assembly-stats-9999_build/assembly-stats
- dodoc README.md
+ cmake_src_prepare
}
^ permalink raw reply related [flat|nested] 7+ messages in thread
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