[gentoo-commits] proj/sci:master commit in: sci-biology/jannovar-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     5b8e34465714552fcfb87a2bce4b6ecb2ac216b8
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jun 23 15:15:48 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jun 23 15:15:48 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5b8e3446

sci-biology/jannovar-bin: renamed package; version bump

Package-Manager: portage-2.2.28

 sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild | 28 +++++++++++++++++++++++
 sci-biology/jannovar-bin/metadata.xml             | 12 ++++++++++
 2 files changed, 40 insertions(+)

diff --git a/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild b/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild
new file mode 100644
index 0000000..fc706b8
--- /dev/null
+++ b/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit java-pkg-2
+
+DESCRIPTION="Exome annotation tool"
+HOMEPAGE="http://compbio.charite.de
+	https://github.com/charite/jannovar"
+SRC_URI="https://github.com/charite/jannovar/releases/download/v0.16/jannovar-cli-0.16.jar"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=">=virtual/jdk-1.7"
+RDEPEND=">=virtual/jre-1.7"
+
+S="${WORKDIR}"
+
+src_install(){
+	cp "${DISTDIR}"/jannovar-cli-0.16.jar jannovar-bin.jar
+	java-pkg_newjar jannovar-bin.jar
+	java-pkg_dolauncher jannovar-bin --jar jannovar-bin.jar
+}

diff --git a/sci-biology/jannovar-bin/metadata.xml b/sci-biology/jannovar-bin/metadata.xml
new file mode 100644
index 0000000..1699e58
--- /dev/null
+++ b/sci-biology/jannovar-bin/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+<maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>