* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2015-05-02 15:45 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2015-05-02 15:45 UTC (permalink / raw
To: gentoo-commits
commit: 1a8ba19a579b0dc582ccfef95d2cb2d9357a71db
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat May 2 15:45:06 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat May 2 15:45:06 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1a8ba19a
sci-biology/glean: new package
Package-Manager: portage-2.2.18
sci-biology/glean/ChangeLog | 9 ++++++++
sci-biology/glean/glean-1.0.1.ebuild | 40 ++++++++++++++++++++++++++++++++++++
sci-biology/glean/metadata.xml | 9 ++++++++
3 files changed, 58 insertions(+)
diff --git a/sci-biology/glean/ChangeLog b/sci-biology/glean/ChangeLog
new file mode 100644
index 0000000..c1783a3
--- /dev/null
+++ b/sci-biology/glean/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/glean
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*glean-1.0.1 (02 May 2015)
+
+ 02 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +glean-1.0.1.ebuild,
+ +metadata.xml:
+ sci-biology/glean: new package
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
new file mode 100644
index 0000000..709c9f9
--- /dev/null
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit perl-module eutils toolchain-funcs
+
+DESCRIPTION="Merge various gene prediction into one (unsupervised learning system)"
+HOMEPAGE="http://sourceforge.net/projects/glean-gene"
+SRC_URI="http://downloads.sourceforge.net/project/glean-gene/GLEAN/glean-1-0-1/glean-1-0-1.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="graphviz"
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ dev-perl/yaml
+ virtual/perl-Storable
+ virtual/perl-Getopt-Long
+ virtual/perl-Data-Dumper
+ virtual/perl-Module-Pluggable
+ dev-perl/Algorithm-Diff
+ sci-biology/bioperl
+ graphviz? ( dev-perl/GraphViz )"
+# FindBin
+# YAML
+
+S="${WORKDIR}"/glean-gene
+
+src_install(){
+ dobin bin/*
+ dodoc README
+ perl_set_version
+ insinto ${VENDOR_LIB}
+ doins -r lib/Glean
+}
diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/glean/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2015-06-15 7:24 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-06-15 7:24 UTC (permalink / raw
To: gentoo-commits
commit: d576d097778f2add7722fb5c9c64c57821c7e40f
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 15 07:19:24 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 15 07:19:24 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d576d097
sci-biology/glean: Fix dependency problems due to recent mask of perl-core packages
Package-Manager: portage-2.2.20
sci-biology/glean/ChangeLog | 4 ++++
sci-biology/glean/glean-1.0.1.ebuild | 2 +-
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/sci-biology/glean/ChangeLog b/sci-biology/glean/ChangeLog
index c1783a3..f9faa5a 100644
--- a/sci-biology/glean/ChangeLog
+++ b/sci-biology/glean/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 15 Jun 2015; Justin Lecher <jlec@gentoo.org> glean-1.0.1.ebuild:
+ sci-biology/glean: Fix dependency problems due to recent mask of perl-core
+ packages
+
*glean-1.0.1 (02 May 2015)
02 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +glean-1.0.1.ebuild,
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
index 709c9f9..9f39cec 100644
--- a/sci-biology/glean/glean-1.0.1.ebuild
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -22,7 +22,7 @@ RDEPEND="${DEPEND}
virtual/perl-Storable
virtual/perl-Getopt-Long
virtual/perl-Data-Dumper
- virtual/perl-Module-Pluggable
+ dev-perl/Module-Pluggable
dev-perl/Algorithm-Diff
sci-biology/bioperl
graphviz? ( dev-perl/GraphViz )"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2015-12-04 21:12 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2015-12-04 21:12 UTC (permalink / raw
To: gentoo-commits
commit: ba0f8763c2abfe1c33e07a01ff72ca1999810f1e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Dec 4 21:11:25 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 4 21:11:25 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ba0f8763
sci-biology/glean: add YAML dependency
Package-Manager: portage-2.2.26
sci-biology/glean/glean-1.0.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
index 9b47f24..9c8b97a 100644
--- a/sci-biology/glean/glean-1.0.1.ebuild
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -24,10 +24,10 @@ RDEPEND="${DEPEND}
virtual/perl-Data-Dumper
dev-perl/Module-Pluggable
dev-perl/Algorithm-Diff
+ dev-perl/yaml
sci-biology/bioperl
graphviz? ( dev-perl/GraphViz )"
# FindBin
-# YAML
S="${WORKDIR}"/glean-gene
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2016-05-07 9:43 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2016-05-07 9:43 UTC (permalink / raw
To: gentoo-commits
commit: 309c85bc8392826b6faebbea1029f52f6832a8ca
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat May 7 09:42:39 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat May 7 09:42:39 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=309c85bc
Fix package name lower to upper case
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/glean/glean-1.0.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
index 9c8b97a..aee9bb5 100644
--- a/sci-biology/glean/glean-1.0.1.ebuild
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -24,7 +24,7 @@ RDEPEND="${DEPEND}
virtual/perl-Data-Dumper
dev-perl/Module-Pluggable
dev-perl/Algorithm-Diff
- dev-perl/yaml
+ dev-perl/YAML
sci-biology/bioperl
graphviz? ( dev-perl/GraphViz )"
# FindBin
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2016-05-07 10:03 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2016-05-07 10:03 UTC (permalink / raw
To: gentoo-commits
commit: 2f8f18edc464cd96f096d6a587ea3e76ee062aff
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat May 7 10:03:14 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat May 7 10:03:14 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2f8f18ed
Drop invalid deps
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/glean/glean-1.0.1.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
index aee9bb5..c4c2f05 100644
--- a/sci-biology/glean/glean-1.0.1.ebuild
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -18,7 +18,6 @@ IUSE="graphviz"
DEPEND=""
RDEPEND="${DEPEND}
- dev-perl/yaml
virtual/perl-Storable
virtual/perl-Getopt-Long
virtual/perl-Data-Dumper
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2021-03-18 18:54 Andrew Ammerlaan
0 siblings, 0 replies; 7+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 18:54 UTC (permalink / raw
To: gentoo-commits
commit: 3020562d7d003b6c6929822b0e62398a79444e39
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 18:51:38 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 18:51:38 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3020562d
sci-biology/glean: use perl_domodule
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/glean/glean-1.0.1.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
index 6544584fe..5aa279af0 100644
--- a/sci-biology/glean/glean-1.0.1.ebuild
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -32,6 +32,5 @@ src_install(){
dobin bin/*
dodoc README
perl_set_version
- insinto ${VENDOR_LIB}
- doins -r lib/Glean
+ perl_domodule -r lib/Glean
}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/glean/
@ 2023-03-21 23:30 Horea Christian
0 siblings, 0 replies; 7+ messages in thread
From: Horea Christian @ 2023-03-21 23:30 UTC (permalink / raw
To: gentoo-commits
commit: 5bb6415cceca3d1484cae320fcde833ae0efb025
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Mar 21 23:30:23 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Mar 21 23:30:23 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5bb6415c
sci-biology/glean: update HOMEPAGE
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/glean/glean-1.0.1.ebuild | 2 +-
sci-biology/glean/metadata.xml | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/glean/glean-1.0.1.ebuild b/sci-biology/glean/glean-1.0.1.ebuild
index d459d664b..507f76900 100644
--- a/sci-biology/glean/glean-1.0.1.ebuild
+++ b/sci-biology/glean/glean-1.0.1.ebuild
@@ -6,7 +6,7 @@ EAPI=7
inherit perl-module
DESCRIPTION="Merge various gene prediction into one (unsupervised learning system)"
-HOMEPAGE="https://sourceforge.net/projects/glean-gene"
+HOMEPAGE="https://sourceforge.net/projects/glean-gene/"
SRC_URI="https://downloads.sourceforge.net/project/glean-gene/GLEAN/glean-${PV//./-}/glean-${PV//./-}.tar.gz"
LICENSE="Artistic"
diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml
index 0f267b755..26831499b 100644
--- a/sci-biology/glean/metadata.xml
+++ b/sci-biology/glean/metadata.xml
@@ -10,6 +10,6 @@
<name>Gentoo Biology Project</name>
</maintainer>
<upstream>
- <remote-id type="sourceforge">downloads</remote-id>
+ <remote-id type="sourceforge">glean-gene</remote-id>
</upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 7+ messages in thread
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