[gentoo-commits] proj/sci:master commit in: sci-biology/prinseq-lite/

[gentoo-commits] proj/sci:master commit in: sci-biology/prinseq-lite/

[Martin Mokrejs]

commit:     9e0134a54a52511520a2adc08d58a9304d130294
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr  3 17:47:49 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr  3 17:47:49 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e0134a5

sci-biology/prinseq-lite: new package, needs more perl modules

Package-Manager: portage-2.2.28

 sci-biology/prinseq-lite/metadata.xml              | 12 ++++++++
 .../prinseq-lite/prinseq-lite-0.20.4.ebuild        | 36 ++++++++++++++++++++++
 2 files changed, 48 insertions(+)

diff --git a/sci-biology/prinseq-lite/metadata.xml b/sci-biology/prinseq-lite/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/prinseq-lite/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
new file mode 100644
index 0000000..b7ae2fb
--- /dev/null
+++ b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="Describe, trim, reformat and convert to or form FASTA/FASTQ files"
+HOMEPAGE="http://prinseq.sourceforge.net/"
+SRC_URI="https://sourceforge.net/projects/prinseq/files/standalone/${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	virtual/perl-Getopt-Long
+	virtual/perl-File-Temp
+	dev-perl/Digest-MD5-File"
+# Cwd
+# Pod::Usage
+# Fcntl qw(:flock SEEK_END)
+# List::Util qw(sum min max)
+
+# prinseq-graphs.pl needs in addition
+# https://sourceforge.net/projects/prinseq/files/README.txt 
+# JSON
+# Cairo
+# Statistics::PCA
+# perl-core/MIME-Base64
+
+src_install(){
+	dobin *.pl
+	dodoc README
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/prinseq-lite/

[Martin Mokrejs]

commit:     8047c5720e5ec1665833e8c431269fa2de2a6d5a
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 22 22:23:42 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr 22 22:23:42 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8047c572

sci-biology/prinseq-lite: add more DEPENDencies

Package-Manager: portage-2.2.28

 sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
index b7ae2fb..599b428 100644
--- a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
+++ b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
@@ -17,7 +17,10 @@ DEPEND=""
 RDEPEND="${DEPEND}
 	virtual/perl-Getopt-Long
 	virtual/perl-File-Temp
-	dev-perl/Digest-MD5-File"
+	virtual/perl-MIME-Base64
+	dev-perl/Digest-MD5-File
+	dev-perl/JSON
+	dev-perl/Cairo"
 # Cwd
 # Pod::Usage
 # Fcntl qw(:flock SEEK_END)
@@ -25,10 +28,7 @@ RDEPEND="${DEPEND}
 
 # prinseq-graphs.pl needs in addition
 # https://sourceforge.net/projects/prinseq/files/README.txt 
-# JSON
-# Cairo
 # Statistics::PCA
-# perl-core/MIME-Base64
 
 src_install(){
 	dobin *.pl

[gentoo-commits] proj/sci:master commit in: sci-biology/prinseq-lite/

[Andrew Ammerlaan]

commit:     65163d368d072de9652f82a76135cd055d924c1b
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Feb  3 06:38:15 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Feb  3 06:38:15 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=65163d36

sci-biology/prinseq-lite: EAPI bump

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
index 6b4ca0b30..034fd86a5 100644
--- a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
+++ b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 DESCRIPTION="Describe, trim, reformat and convert to or form FASTA/FASTQ files"
 HOMEPAGE="http://prinseq.sourceforge.net/"
@@ -9,8 +9,7 @@ SRC_URI="https://sourceforge.net/projects/prinseq/files/standalone/${P}.tar.gz"
 
 LICENSE="GPL-3+"
 SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
 
 DEPEND=""
 RDEPEND="${DEPEND}