From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id A65F859CB1 for ; Mon, 11 Apr 2016 19:46:18 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6769A21C001; Mon, 11 Apr 2016 19:46:14 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id E7B6E21C001 for ; Mon, 11 Apr 2016 19:46:13 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 32E0D340B54 for ; Mon, 11 Apr 2016 19:46:12 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 2EABD80 for ; Mon, 11 Apr 2016 19:46:10 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1460403794.e1714efc4d71beec0428f59ae0fa6ec7b166bd0a.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/trinityrnaseq/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild sci-biology/trinityrnaseq/trinityrnaseq-2.2.0.ebuild X-VCS-Directories: sci-biology/trinityrnaseq/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: e1714efc4d71beec0428f59ae0fa6ec7b166bd0a X-VCS-Branch: master Date: Mon, 11 Apr 2016 19:46:10 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: cff71bf5-d4fd-44b6-b5c7-4dfd4f35f691 X-Archives-Hash: fb87f4c0d97f69ec85f0a87ecebf3397 commit: e1714efc4d71beec0428f59ae0fa6ec7b166bd0a Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon Apr 11 19:43:14 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Apr 11 19:43:14 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e1714efc sci-biology/trinityrnaseq: adjust to sci-biology/samtools using SLOTs now; installation suffers file collision on /usr/bin/fasta_tool , see usptream github issue #126 Package-Manager: portage-2.2.28 sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild | 2 +- sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild | 2 +- .../{trinityrnaseq-2.1.1.ebuild => trinityrnaseq-2.2.0.ebuild} | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild index 0e93c19..226fa17 100644 --- a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild +++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild @@ -23,7 +23,7 @@ DEPEND="" RDEPEND="${DEPEND} sci-biology/parafly =sci-biology/jellyfish-2.1.4 - sci-biology/samtools + sci-biology/samtools:0.1-legacy >=sci-biology/GAL-0.2.1 dev-perl/IO-All" # ReleaseNotes mentions that