From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id B86DC59CAF for ; Sun, 10 Apr 2016 20:27:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 5823621C004; Sun, 10 Apr 2016 20:27:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id EF30421C004 for ; Sun, 10 Apr 2016 20:27:36 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C49643405BB for ; Sun, 10 Apr 2016 20:27:35 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 19BC186 for ; Sun, 10 Apr 2016 20:27:34 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1460319883.244da94d9f3d1fa1a359a2663c2b8f309e94b634.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/snpomatic/metadata.xml sci-biology/snpomatic/snpomatic-9999.ebuild X-VCS-Directories: sci-biology/snpomatic/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 244da94d9f3d1fa1a359a2663c2b8f309e94b634 X-VCS-Branch: master Date: Sun, 10 Apr 2016 20:27:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: aa20a913-36a1-4772-96e8-afdcc66ef41c X-Archives-Hash: 16f86c29721b3a2d9b3dc3581f7999cd commit: 244da94d9f3d1fa1a359a2663c2b8f309e94b634 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Apr 10 20:24:43 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Apr 10 20:24:43 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=244da94d sci-biology/snpomatic: new package Package-Manager: portage-2.2.28 sci-biology/snpomatic/metadata.xml | 12 ++++++++++ sci-biology/snpomatic/snpomatic-9999.ebuild | 34 +++++++++++++++++++++++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/snpomatic/metadata.xml b/sci-biology/snpomatic/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/snpomatic/metadata.xml @@ -0,0 +1,12 @@ + + + + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + + sci-biology@gentoo.org + Gentoo Biology Project + + diff --git a/sci-biology/snpomatic/snpomatic-9999.ebuild b/sci-biology/snpomatic/snpomatic-9999.ebuild new file mode 100644 index 0000000..1d134f1 --- /dev/null +++ b/sci-biology/snpomatic/snpomatic-9999.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +[ "$PV" == "9999" ] && inherit git-r3 + +DESCRIPTION="Stringent short-read aligner supporting filters and various output formats" +HOMEPAGE="https://github.com/magnusmanske/snpomatic" +# http://snpomatic.sourceforge.net/snpomatic_manual.pdf +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git" + KEYWORDS="" +else + SRC_URI="" + KEYWORDS="" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die +} + +src_install(){ + dobin findknownsnps + dodoc doc/Manual.doc +}