[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/

[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/

[Martin Mokrejs]

commit:     244da94d9f3d1fa1a359a2663c2b8f309e94b634
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 10 20:24:43 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 10 20:24:43 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=244da94d

sci-biology/snpomatic: new package

Package-Manager: portage-2.2.28

 sci-biology/snpomatic/metadata.xml          | 12 ++++++++++
 sci-biology/snpomatic/snpomatic-9999.ebuild | 34 +++++++++++++++++++++++++++++
 2 files changed, 46 insertions(+)

diff --git a/sci-biology/snpomatic/metadata.xml b/sci-biology/snpomatic/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/snpomatic/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/snpomatic/snpomatic-9999.ebuild b/sci-biology/snpomatic/snpomatic-9999.ebuild
new file mode 100644
index 0000000..1d134f1
--- /dev/null
+++ b/sci-biology/snpomatic/snpomatic-9999.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+[ "$PV" == "9999" ] && inherit git-r3
+
+DESCRIPTION="Stringent short-read aligner supporting filters and various output formats"
+HOMEPAGE="https://github.com/magnusmanske/snpomatic"
+# http://snpomatic.sourceforge.net/snpomatic_manual.pdf
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git"
+	KEYWORDS=""
+else
+	SRC_URI=""
+	KEYWORDS=""
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_prepare(){
+	sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die
+}
+
+src_install(){
+	dobin findknownsnps
+	dodoc doc/Manual.doc
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/

[Andrew Ammerlaan]

commit:     b2e582b1347b87415bfb4467e8f6da566a9f1305
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 14:34:33 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 14:34:33 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b2e582b1

sci-biology/snpomatic: EAPI bump, add keywords

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../{snpomatic-9999.ebuild => snpomatic-1.0.ebuild}        | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/sci-biology/snpomatic/snpomatic-9999.ebuild b/sci-biology/snpomatic/snpomatic-1.0.ebuild
similarity index 74%
rename from sci-biology/snpomatic/snpomatic-9999.ebuild
rename to sci-biology/snpomatic/snpomatic-1.0.ebuild
index 15b8e3e4b..21857195a 100644
--- a/sci-biology/snpomatic/snpomatic-9999.ebuild
+++ b/sci-biology/snpomatic/snpomatic-1.0.ebuild
@@ -1,29 +1,27 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
-
-[ "$PV" == "9999" ] && inherit git-r3
+EAPI=7
 
 DESCRIPTION="Stringent short-read aligner supporting filters and various output formats"
 HOMEPAGE="https://github.com/magnusmanske/snpomatic"
-# http://snpomatic.sourceforge.net/snpomatic_manual.pdf
 if [ "$PV" == "9999" ]; then
+	inherit git-r3
 	EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git"
 	KEYWORDS=""
 else
-	SRC_URI=""
-	KEYWORDS=""
+	SRC_URI="https://github.com/magnusmanske/snpomatic/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64"
 fi
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}"
 
 src_prepare(){
+	default
 	sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die
 }
 

[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/

[Andrew Ammerlaan]

commit:     b107d0c2dfee190bea691828c7f474bbeaee4109
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 20 11:01:12 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 20 11:01:12 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b107d0c2

sci-biology/snpomatic: fix MultipleKeywordsLines

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/snpomatic/snpomatic-1.0.ebuild | 1 -
 1 file changed, 1 deletion(-)

diff --git a/sci-biology/snpomatic/snpomatic-1.0.ebuild b/sci-biology/snpomatic/snpomatic-1.0.ebuild
index 21857195a..e33271b2e 100644
--- a/sci-biology/snpomatic/snpomatic-1.0.ebuild
+++ b/sci-biology/snpomatic/snpomatic-1.0.ebuild
@@ -8,7 +8,6 @@ HOMEPAGE="https://github.com/magnusmanske/snpomatic"
 if [ "$PV" == "9999" ]; then
 	inherit git-r3
 	EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git"
-	KEYWORDS=""
 else
 	SRC_URI="https://github.com/magnusmanske/snpomatic/archive/v${PV}.tar.gz -> ${P}.tar.gz"
 	KEYWORDS="~amd64"