[gentoo-commits] proj/sci:master commit in: sci-biology/pysam/

["Marius Brehler" <marbre@linux.sungazer.de>]

commit:     b3b06688c38bc3f28d68be75e5e30ff1adcb1386
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Apr  9 22:14:19 2016 +0000
Commit:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Apr  9 22:14:19 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3b06688

sci-biology/pysam: Remove old, latest 0.9.0 in main tree

Package-Manager: portage-2.2.28

 sci-biology/pysam/pysam-0.6-r2.ebuild | 26 --------------------------
 sci-biology/pysam/pysam-0.8.3.ebuild  | 29 -----------------------------
 sci-biology/pysam/pysam-0.8.4.ebuild  | 27 ---------------------------
 3 files changed, 82 deletions(-)

diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild
deleted file mode 100644
index 01f86da..0000000
--- a/sci-biology/pysam/pysam-0.6-r2.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"
-SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
-	<=sci-biology/samtools-0.1.18[${PYTHON_USEDEP}]"
-
-python_compile() {
-	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
-	distutils-r1_python_compile
-}

diff --git a/sci-biology/pysam/pysam-0.8.3.ebuild b/sci-biology/pysam/pysam-0.8.3.ebuild
deleted file mode 100644
index a08855f..0000000
--- a/sci-biology/pysam/pysam-0.8.3.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"
-SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
-	>=sci-biology/samtools-1.2[${PYTHON_USEDEP}]
-	>=sci-libs/htslib-1.2.1"
-
-PATCHES=( "${FILESDIR}/${P}-cython-0.23.patch" )
-
-python_compile() {
-	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
-	distutils-r1_python_compile
-}

diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild
deleted file mode 100644
index 2b4d3d9..0000000
--- a/sci-biology/pysam/pysam-0.8.4.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"
-SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
-	>=sci-biology/samtools-1.2[${PYTHON_USEDEP}]
-	>=sci-libs/htslib-1.2.1"
-
-python_compile() {
-	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
-	distutils-r1_python_compile
-}