[gentoo-commits] proj/sci:master commit in: sci-biology/bamtools/, sci-biology/bamtools/files/

[gentoo-commits] proj/sci:master commit in: sci-biology/bamtools/, sci-biology/bamtools/files/

[Martin Mokrejs]

commit:     778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 31 23:10:46 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 31 23:10:46 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=778b9cad

sci-biology/bamtools: version bump; still suffers gentoo bug #550144

Package-Manager: portage-2.2.28

 sci-biology/bamtools/bamtools-2.4.0.ebuild         | 31 ++++++++++++++++++++++
 .../bamtools/files/bamtools-2.4.0-unbundle.patch   | 23 ++++++++++++++++
 2 files changed, 54 insertions(+)

diff --git a/sci-biology/bamtools/bamtools-2.4.0.ebuild b/sci-biology/bamtools/bamtools-2.4.0.ebuild
new file mode 100644
index 0000000..b2d7d62
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-2.4.0.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="static-libs"
+
+DEPEND="
+	>=dev-libs/jsoncpp-0.5.0-r1
+	<dev-libs/jsoncpp-1
+	sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/${P}-unbundle.patch )
+
+src_install() {
+	cmake-utils_src_install
+	if ! use static-libs; then
+		rm "${ED}"/usr/$(get_libdir)/*.a || die
+	fi
+}

diff --git a/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch
new file mode 100644
index 0000000..c07c59d
--- /dev/null
+++ b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch
@@ -0,0 +1,23 @@
+--- bamtools-2.3.0/src/api/CMakeLists.txt.ori	2013-08-27 18:00:43.000000000 +0200
++++ bamtools-2.3.0/src/api/CMakeLists.txt	2013-08-27 18:00:47.000000000 +0200
+@@ -54,8 +54,8 @@
+ target_link_libraries( BamTools-static ${APILibs} )
+ 
+ # set library install destinations
+-install( TARGETS BamTools        LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
+-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
++install( TARGETS BamTools        LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin")
++install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}")
+ 
+ # export API headers
+ include(../ExportHeader.cmake)
+--- bamtools-2.3.0/src/CMakeLists.txt.ori	2013-08-27 18:03:10.000000000 +0200
++++ bamtools-2.3.0/src/CMakeLists.txt	2013-08-27 18:03:23.000000000 +0200
+@@ -6,7 +6,6 @@
+ # ==========================
+ 
+ add_subdirectory( api )
+-add_subdirectory( third_party )
+ add_subdirectory( toolkit )
+ add_subdirectory( utils )
+