From: "Denis Dupeyron" <calchan@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/
Date: Tue, 15 Mar 2016 19:59:22 +0000 (UTC) [thread overview]
Message-ID: <1458071936.ca161a07ae9f4f5d49a908c9cbd5d9f12794b15e.calchan@gentoo> (raw)
commit: ca161a07ae9f4f5d49a908c9cbd5d9f12794b15e
Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
AuthorDate: Tue Mar 15 19:58:30 2016 +0000
Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org>
CommitDate: Tue Mar 15 19:58:56 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ca161a07
dev-lang/R: bump to 3.2.4
dev-lang/R/Manifest | 1 +
dev-lang/R/R-3.2.4.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 207 insertions(+)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 95f848f..47cf3ef 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,4 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883
+DIST R-3.2.4.tar.gz 29879523 SHA256 bafd405fe9c2fe3bbe47a8a7730ad120f03b7df9fb0f61674fca19cf061dd350 SHA512 a74f01a9b47437feb81520c10936a6f2bc7700900730ec87b7f1442ee90bcf1d7aac9ef3345aa046c0566f1920f114da0a616c5f355b1e8480dc01e311476cbf WHIRLPOOL 0277c372baaf6c50c403c03b8fef04e80e8690efad875c26a03283a4f4d32e53610091695922a57a2f8bee4ac1a568b36f1fbf929bf61d11298b81907a3aaac6
diff --git a/dev-lang/R/R-3.2.4.ebuild b/dev-lang/R/R-3.2.4.ebuild
new file mode 100644
index 0000000..c8227c9
--- /dev/null
+++ b/dev-lang/R/R-3.2.4.ebuild
@@ -0,0 +1,206 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
+
+BCP=${PN}-20130129.bash_completion
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="http://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-3/${P}.tar.gz
+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
+
+CDEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ >=dev-libs/libpcre-8.35:3=
+ virtual/blas:0
+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
+
+DEPEND="${CDEPEND}
+ virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )"
+
+RDEPEND="${CDEPEND}
+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
+ java? ( >=virtual/jre-1.5 )"
+
+RESTRICT="minimal? ( test )"
+
+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+ # Temporary fix for bug #419761
+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
+ append-flags -fno-ipa-cp-clone
+ fi
+}
+
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -i \
+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -i \
+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
+ src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -i \
+ -e 's:\.\./manual/:manual/:g' \
+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -i \
+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -i \
+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
+ src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4 eaclocal
+ eautoconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-system-zlib \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-xz \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${R_DIR}/lib
+ R_HOME=${R_DIR}
+ EOF
+ doenvd 99R
+ newbashcomp "${WORKDIR}"/${BCP} ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/lib/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+ docompress -x /usr/share/doc/${PF}/NEWS.rds
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
next reply other threads:[~2016-03-15 19:59 UTC|newest]
Thread overview: 99+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-03-15 19:59 Denis Dupeyron [this message]
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2024-06-23 1:58 [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/ David Seifert
2024-06-23 1:48 David Seifert
2024-01-26 12:23 Sam James
2023-12-22 17:47 Arthur Zamarin
2023-11-02 12:57 David Seifert
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2023-09-09 19:26 David Seifert
2023-09-09 19:24 Arthur Zamarin
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2023-05-11 9:23 David Seifert
2023-05-06 9:52 Arthur Zamarin
2023-05-06 9:52 Arthur Zamarin
2023-05-06 9:51 Arthur Zamarin
2023-04-27 6:39 Sam James
2023-03-24 20:21 Michael Orlitzky
2023-03-07 3:46 WANG Xuerui
2022-11-22 7:57 Sam James
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2022-09-01 9:19 David Seifert
2022-09-01 8:47 Agostino Sarubbo
2022-08-30 16:09 Sam James
2022-08-30 11:48 Arthur Zamarin
2022-08-30 11:09 Arthur Zamarin
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2022-06-19 8:09 David Seifert
2022-06-13 21:07 Jakov Smolić
2022-06-12 8:32 Agostino Sarubbo
2022-06-12 8:28 Agostino Sarubbo
2022-06-10 21:38 Jakov Smolić
2022-06-01 15:10 Michael Orlitzky
2022-06-01 5:25 Sam James
2022-05-11 12:49 David Seifert
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2022-05-07 22:31 Michael Orlitzky
2022-03-21 22:07 Patrice Clement
2022-01-26 10:10 David Seifert
2021-10-23 14:24 David Seifert
2021-08-06 13:34 Sam James
2021-07-18 2:48 Sam James
2021-07-16 11:52 Benda XU
2021-07-12 17:37 Michael Orlitzky
2021-07-12 14:11 Michael Orlitzky
2021-07-10 17:28 Sam James
2021-06-06 18:00 Pacho Ramos
2021-04-20 11:06 David Seifert
2021-04-11 18:41 Sergei Trofimovich
2021-04-10 13:33 Mikle Kolyada
2021-03-28 19:44 Sam James
2021-03-28 11:00 Sam James
2021-03-19 18:07 Mikle Kolyada
2021-03-05 13:46 Mikle Kolyada
2020-12-13 16:59 Fabian Groffen
2020-06-22 23:38 Michael Orlitzky
2020-05-24 5:04 Mark Wright
2020-04-28 15:34 Michael Orlitzky
2020-04-18 1:33 Michael Orlitzky
2020-03-25 15:13 Michael Orlitzky
2020-03-25 15:13 Michael Orlitzky
2020-01-13 9:49 Mark Wright
2020-01-13 9:49 Mark Wright
2019-10-16 12:43 Jeroen Roovers
2019-07-26 20:41 Aaron Bauman
2019-06-04 17:47 Amy Liffey
2019-06-04 17:47 Amy Liffey
2019-04-07 10:00 Mark Wright
2018-10-12 12:43 Mikle Kolyada
2018-09-27 18:33 Sergei Trofimovich
2018-09-18 1:09 Matt Turner
2018-07-04 0:10 Mark Wright
2018-07-03 0:48 Mark Wright
2018-04-19 20:19 Mikle Kolyada
2018-04-18 21:04 Sergei Trofimovich
2017-07-27 21:19 Denis Dupeyron
2017-07-11 19:30 Justin Lecher
2016-12-08 16:35 Denis Dupeyron
2016-09-12 20:24 Denis Dupeyron
2016-09-12 19:47 Denis Dupeyron
2016-09-12 19:38 Denis Dupeyron
2016-06-24 2:58 Denis Dupeyron
2016-05-08 16:08 Denis Dupeyron
2016-05-08 15:03 Denis Dupeyron
2016-04-20 18:05 Denis Dupeyron
2016-01-04 18:24 Denis Dupeyron
2015-10-16 11:04 Mikle Kolyada
2015-09-27 7:27 Jeroen Roovers
2015-09-26 17:22 Mikle Kolyada
2015-09-25 14:13 Agostino Sarubbo
2015-09-24 14:00 Agostino Sarubbo
2015-08-20 14:31 Denis Dupeyron
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