* [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/
@ 2015-05-23 15:53 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-05-23 15:53 UTC (permalink / raw
To: gentoo-commits
commit: 206678a23fa5c9e15cac30b35b6951d6426551f5
Author: layman <layman <AT> localhost>
AuthorDate: Thu May 21 17:40:24 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 21 17:40:24 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=206678a2
sci-biology/kallisto: add kallisto
Package-Manager: portage-2.2.14-prefix
sci-biology/kallisto/ChangeLog | 10 ++++++++++
sci-biology/kallisto/kallisto-0.42.1.ebuild | 19 +++++++++++++++++++
sci-biology/kallisto/kallisto-9999.ebuild | 20 ++++++++++++++++++++
sci-biology/kallisto/metadata.xml | 9 +++++++++
4 files changed, 58 insertions(+)
diff --git a/sci-biology/kallisto/ChangeLog b/sci-biology/kallisto/ChangeLog
new file mode 100644
index 0000000..6b15b36
--- /dev/null
+++ b/sci-biology/kallisto/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/kallisto
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*kallisto-0.42.1 (21 May 2015)
+*kallisto-9999 (21 May 2015)
+
+ 21 May 2015; Michael Schubert <mschu.dev@gmail.com> +kallisto-0.42.1.ebuild,
+ +kallisto-9999.ebuild, +metadata.xml:
+ sci-biology/kallisto: add kallisto
diff --git a/sci-biology/kallisto/kallisto-0.42.1.ebuild b/sci-biology/kallisto/kallisto-0.42.1.ebuild
new file mode 100644
index 0000000..dfc4eaf
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-0.42.1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="sci-libs/hdf5"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
new file mode 100644
index 0000000..cc5b269
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit git-r3 cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+SRC_URI=""
+EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="sci-libs/hdf5"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
new file mode 100644
index 0000000..b7551a6
--- /dev/null
+++ b/sci-biology/kallisto/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mschu.dev@gmail.com</email>
+ <name>Michael Schubert</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/
@ 2016-02-28 10:43 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2016-02-28 10:43 UTC (permalink / raw
To: gentoo-commits
commit: dd23299cffc8c3b7fda2e3b2df60739a6c96aad9
Author: mschubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Sat Jan 23 18:32:40 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 28 10:43:15 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd23299c
sci-biology/kallisto: version bump 0.42.4
Package-Manager: portage-2.2.20-prefix
.../kallisto/{kallisto-0.42.1.ebuild => kallisto-0.42.4.ebuild} | 0
sci-biology/kallisto/kallisto-9999.ebuild | 1 -
sci-biology/kallisto/metadata.xml | 8 ++++----
3 files changed, 4 insertions(+), 5 deletions(-)
diff --git a/sci-biology/kallisto/kallisto-0.42.1.ebuild b/sci-biology/kallisto/kallisto-0.42.4.ebuild
similarity index 100%
rename from sci-biology/kallisto/kallisto-0.42.1.ebuild
rename to sci-biology/kallisto/kallisto-0.42.4.ebuild
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
index 3bfcbc4..94a067f 100644
--- a/sci-biology/kallisto/kallisto-9999.ebuild
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -13,7 +13,6 @@ EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
LICENSE="all-rights-reserved"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
DEPEND="sci-libs/hdf5"
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
index a8b4491..30a530f 100644
--- a/sci-biology/kallisto/metadata.xml
+++ b/sci-biology/kallisto/metadata.xml
@@ -1,14 +1,14 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="person">
- <email>mschu.dev@gmail.com</email>
- <name>Michael Schubert</name>
- </maintainer>
<maintainer type="project">
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
</maintainer>
+ <maintainer type="person">
+ <email>mschu.dev@gmail.com</email>
+ <name>Michael Schubert</name>
+ </maintainer>
<upstream>
<remote-id type="github">pachterlab/kallisto</remote-id>
</upstream>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/
@ 2016-02-28 10:43 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2016-02-28 10:43 UTC (permalink / raw
To: gentoo-commits
commit: 3a4e40607d760dd8efd7de44d5a0c810054d117e
Author: mschubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Sat Feb 27 20:21:09 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 28 10:43:15 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3a4e4060
sci-biology/kallisto: bump EAPI=6
sci-biology/kallisto/kallisto-0.42.4.ebuild | 2 +-
sci-biology/kallisto/kallisto-9999.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/kallisto/kallisto-0.42.4.ebuild b/sci-biology/kallisto/kallisto-0.42.4.ebuild
index ce7bb13..5dcaefb 100644
--- a/sci-biology/kallisto/kallisto-0.42.4.ebuild
+++ b/sci-biology/kallisto/kallisto-0.42.4.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
inherit cmake-utils
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
index 94a067f..856a8bd 100644
--- a/sci-biology/kallisto/kallisto-9999.ebuild
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -2,7 +2,7 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
inherit git-r3 cmake-utils
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/
@ 2016-06-30 21:29 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2016-06-30 21:29 UTC (permalink / raw
To: gentoo-commits
commit: ef8f5fd4172753f0e96fb8022740c4847d461833
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jun 30 21:29:24 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jun 30 21:29:24 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef8f5fd4
sci-biology/kallisto: provide license text, version bump
Package-Manager: portage-2.2.28
.../kallisto/{kallisto-0.42.4.ebuild => kallisto-0.43.0.ebuild} | 4 ++--
sci-biology/kallisto/kallisto-9999.ebuild | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/kallisto/kallisto-0.42.4.ebuild b/sci-biology/kallisto/kallisto-0.43.0.ebuild
similarity index 74%
rename from sci-biology/kallisto/kallisto-0.42.4.ebuild
rename to sci-biology/kallisto/kallisto-0.43.0.ebuild
index 5dcaefb..7c3e98b 100644
--- a/sci-biology/kallisto/kallisto-0.42.4.ebuild
+++ b/sci-biology/kallisto/kallisto-0.43.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -10,7 +10,7 @@ DESCRIPTION="Near-optimal RNA-Seq quantification"
HOMEPAGE="http://pachterlab.github.io/kallisto/"
SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-LICENSE="all-rights-reserved"
+LICENSE="kallisto" # For commercial use contact Office of Technology Licensing, UC Berkeley
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
index 856a8bd..b2de7a5 100644
--- a/sci-biology/kallisto/kallisto-9999.ebuild
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -11,7 +11,7 @@ HOMEPAGE="http://pachterlab.github.io/kallisto/"
SRC_URI=""
EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
-LICENSE="all-rights-reserved"
+LICENSE="kallisto" # For commercial use contact Office of Technology Licensing, UC Berkeley
SLOT="0"
IUSE=""
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/kallisto/
@ 2016-07-02 8:21 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2016-07-02 8:21 UTC (permalink / raw
To: gentoo-commits
commit: 01193511274aeee7477f3bf9d8450fa49d210e93
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 2 08:21:13 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jul 2 08:21:13 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=01193511
Drop due to invalid/missing license
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/kallisto/kallisto-0.43.0.ebuild | 19 -------------------
sci-biology/kallisto/kallisto-9999.ebuild | 19 -------------------
sci-biology/kallisto/metadata.xml | 15 ---------------
3 files changed, 53 deletions(-)
diff --git a/sci-biology/kallisto/kallisto-0.43.0.ebuild b/sci-biology/kallisto/kallisto-0.43.0.ebuild
deleted file mode 100644
index 7c3e98b..0000000
--- a/sci-biology/kallisto/kallisto-0.43.0.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-inherit cmake-utils
-
-DESCRIPTION="Near-optimal RNA-Seq quantification"
-HOMEPAGE="http://pachterlab.github.io/kallisto/"
-SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="kallisto" # For commercial use contact Office of Technology Licensing, UC Berkeley
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-DEPEND="sci-libs/hdf5"
-RDEPEND="${DEPEND}"
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
deleted file mode 100644
index b2de7a5..0000000
--- a/sci-biology/kallisto/kallisto-9999.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-inherit git-r3 cmake-utils
-
-DESCRIPTION="Near-optimal RNA-Seq quantification"
-HOMEPAGE="http://pachterlab.github.io/kallisto/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
-
-LICENSE="kallisto" # For commercial use contact Office of Technology Licensing, UC Berkeley
-SLOT="0"
-IUSE=""
-
-DEPEND="sci-libs/hdf5"
-RDEPEND="${DEPEND}"
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
deleted file mode 100644
index 30a530f..0000000
--- a/sci-biology/kallisto/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <maintainer type="person">
- <email>mschu.dev@gmail.com</email>
- <name>Michael Schubert</name>
- </maintainer>
- <upstream>
- <remote-id type="github">pachterlab/kallisto</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
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