[gentoo-commits] proj/sci:master commit in: sci-biology/ANGLE-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     3f78358286d681fd4f41ce8a366a45988d70f8b1
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Feb 10 15:23:58 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Feb 10 15:23:58 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3f783582

sci-biology/ANGLE-bin: new package

Package-Manager: portage-2.2.26

 sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild | 33 +++++++++++++++++++++++++
 sci-biology/ANGLE-bin/metadata.xml              | 12 +++++++++
 2 files changed, 45 insertions(+)

diff --git a/sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild b/sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild
new file mode 100644
index 0000000..44bc582
--- /dev/null
+++ b/sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="CDS prediction overcoming sequencing errors in protein coding regions in unfinished cDNA"
+HOMEPAGE="http://bioinformatics.cenargen.embrapa.br/portrait/download"
+SRC_URI="http://bioinformatics.cenargen.embrapa.br/portrait/download/angle.tar.gz"
+
+RESTRICT="fetch"
+# According to Roberto T Arrial (author of portrait) for the purpose of his
+# portrait project the binaries were provided under a BSD license.
+# The output from Angle is modified for use with portrait and differs from
+# current versions at http://cbrc3.cbrc.jp/~shimizu/index.php
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/angle
+
+src_install(){
+	dobin *.pl ANGLE-linux64 ANGLE-linux32 ANGLE-linux32DP ANGLE-linux64DP
+	dodoc README.txt
+	insinto /usr/share/"${PN}"
+	doins test.html sample.txt sample2.txt "test" seq2.noOrf
+	doins -r param-human
+	doins -r param-plant
+}

diff --git a/sci-biology/ANGLE-bin/metadata.xml b/sci-biology/ANGLE-bin/metadata.xml
new file mode 100644
index 0000000..1699e58
--- /dev/null
+++ b/sci-biology/ANGLE-bin/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+<maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>