From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 2C4FC58973 for ; Mon, 1 Feb 2016 11:13:29 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A090121C055; Mon, 1 Feb 2016 11:13:28 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id EA1C721C044 for ; Mon, 1 Feb 2016 11:13:27 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A2688340D27 for ; Mon, 1 Feb 2016 11:13:26 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 463BBC6F for ; Mon, 1 Feb 2016 11:13:24 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1454325200.c67f961c0f4e2644fd73be98fa77e4fb2dd9b0d1.jlec@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/rebase/Manifest sci-biology/rebase/rebase-1602.ebuild X-VCS-Directories: sci-biology/rebase/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: c67f961c0f4e2644fd73be98fa77e4fb2dd9b0d1 X-VCS-Branch: master Date: Mon, 1 Feb 2016 11:13:24 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: f7dfee44-b08b-4714-b5b6-de1d500e011c X-Archives-Hash: 4c10b170599a09f7b8a01173fbd2f91b commit: c67f961c0f4e2644fd73be98fa77e4fb2dd9b0d1 Author: Justin Lecher gentoo org> AuthorDate: Mon Feb 1 11:13:00 2016 +0000 Commit: Justin Lecher gentoo org> CommitDate: Mon Feb 1 11:13:20 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c67f961c sci-biology/rebase: Version Bump Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher gentoo.org> sci-biology/rebase/Manifest | 1 + sci-biology/rebase/rebase-1602.ebuild | 46 +++++++++++++++++++++++++++++++++++ 2 files changed, 47 insertions(+) diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index 5654025..42575ea 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -1,3 +1,4 @@ DIST rebase-1510.tar.xz 90412200 SHA256 0a33a34003c95f65d8ec8bbf11907bccad47d0bdddc39030a663df5ef2922f87 SHA512 c76b42df5a5bc64a951693b35a8664195a0fb1b84bdd64f80e8986a705ca1279e51c324153a83272ecb9b3dfb3fd565cb43c2b25c9e37655767c278e6320590e WHIRLPOOL 238841844c19ad028147a4a5a366a219e405b1ae1d0ae79767775518a0ecdabe37948a260724e4053af183ad00799c60da21d57dae84cdc6859e19a04aac314a DIST rebase-1511.tar.xz 95276416 SHA256 e8b0686ad02d15d833febf5f353cb66febfccb730fb7e92968b05739d8d4a494 SHA512 b7998763a092389be8d5eb4b9c59a7297859d4f03be6a4c3933288d5407fe1b64268d6fb03b7df0604ad0801991937ee345c2f932c9621ea7bab4d68c9c59261 WHIRLPOOL 53ce94b77fb5b1557b790bad48064066833f6800ebef29a33f80e3fa6b8dbf0666443dc0301521e88d4e9f38579011edc37979f12b95cd84ea8afb07f7e8ffc7 DIST rebase-1601.tar.xz 99890720 SHA256 de0f7dd6cf831c52434e7434491b9c738c41aab51c8f8d91b243569f25209eb8 SHA512 a6e3faf7fc2eaf475605ed72db7f1cfdc4ba8c280f1650f723c5a664090ed64e7ac014012042c466d65edea8b2767bbcb0f38c3d5b69dbdb35e89cf0685c92ad WHIRLPOOL f06338c0d6ef59d7ac792f6f7fc48338b73d659614c0694109152fd33606174be6741cb662478f38e37e9622118de27c3c30c537b741b49e218f64973fe2c783 +DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0 diff --git a/sci-biology/rebase/rebase-1602.ebuild b/sci-biology/rebase/rebase-1602.ebuild new file mode 100644 index 0000000..9adb365 --- /dev/null +++ b/sci-biology/rebase/rebase-1602.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +MY_PV=${PV#1} + +DESCRIPTION="A restriction enzyme database" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" + +SLOT="0" +LICENSE="public-domain" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris" +IUSE="emboss minimal" + +RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +DEPEND="${RDEPEND}" + +RESTRICT="binchecks strip" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE || die + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \ + -protofile proto.${MY_PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${MY_PV} proto.${MY_PV} + fi + newdoc REBASE.DOC README + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ + fi +}