[gentoo-commits] proj/sci:master commit in: sci-biology/maker/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     cc20c5c57f35f32361e627442c3550207c04e4b0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Dec 31 21:25:08 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Dec 31 21:25:08 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc20c5c5

sci-biology/maker: DEPEND on external sci-biology/GAL package; rename 'compare' binary as agreed with upstream

Package-Manager: portage-2.2.26

 sci-biology/maker/ChangeLog           | 4 ++++
 sci-biology/maker/maker-2.31.8.ebuild | 3 +++
 2 files changed, 7 insertions(+)

diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog
index 16cf654..c06e483 100644
--- a/sci-biology/maker/ChangeLog
+++ b/sci-biology/maker/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+  31 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> maker-2.31.8.ebuild:
+  sci-biology/maker: DEPEND on external sci-biology/GAL package; rename
+  'compare' binary as agreed with upstream
+
   30 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> maker-2.31.8.ebuild:
   sci-biology/maker: do install from a top-level directory; there is a file
   collision with /usr/bin/compare from media-gfx/imagemagick and with

diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild
index bb0dba6..60abb3a 100644
--- a/sci-biology/maker/maker-2.31.8.ebuild
+++ b/sci-biology/maker/maker-2.31.8.ebuild
@@ -37,6 +37,7 @@ DEPEND="
 	dev-perl/Perl-Unsafe-Signals
 	dev-perl/forks
 	dev-perl/forks-shared
+	>=sci-biology/GAL-0.2.1
 	>=sci-biology/bioperl-1.6
 	sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ )
 	sci-biology/snap
@@ -103,6 +104,8 @@ src_compile(){
 
 src_install(){
 	cd "${WORKDIR}"/maker || die
+	rm -f bin/fasta_tool # is part of sci-biology/GAL
+	mv bin/compare bin/compare_gff3_to_chado # rename as agreed by upstream, will be in maker-3 as well
 	dobin bin/*
 	dodoc README INSTALL
 	insinto /usr/share/"{PN}"/GMOD/Apollo