From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id C26431384B4 for ; Wed, 30 Dec 2015 18:17:45 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 054A321C004; Wed, 30 Dec 2015 18:17:43 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 8BE7021C004 for ; Wed, 30 Dec 2015 18:17:42 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F109834087C for ; Wed, 30 Dec 2015 18:17:40 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 54430B40 for ; Wed, 30 Dec 2015 18:17:36 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1451499379.c5c8232d407b040a96110c2a04ca4049e6e7d86f.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/maker/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/maker/ChangeLog sci-biology/maker/maker-2.31.8.ebuild X-VCS-Directories: sci-biology/maker/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: c5c8232d407b040a96110c2a04ca4049e6e7d86f X-VCS-Branch: master Date: Wed, 30 Dec 2015 18:17:36 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: b06215a9-df04-4391-b3a0-2b0fb3915c7b X-Archives-Hash: adaea52c93772e06f709800975129951 commit: c5c8232d407b040a96110c2a04ca4049e6e7d86f Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Wed Dec 30 18:16:19 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Wed Dec 30 18:16:19 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c5c8232d sci-biology/maker: added openmpi as dependency; define our own src_install(); add einfo message; added dev-perl/forks-shared dependency Package-Manager: portage-2.2.26 sci-biology/maker/ChangeLog | 4 ++++ sci-biology/maker/maker-2.31.8.ebuild | 13 ++++++++++++- 2 files changed, 16 insertions(+), 1 deletion(-) diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog index 254d082..2befe1a 100644 --- a/sci-biology/maker/ChangeLog +++ b/sci-biology/maker/ChangeLog @@ -3,6 +3,10 @@ # $Id$ 30 Dec 2015; Martin Mokrejs maker-2.31.8.ebuild: + sci-biology/maker: added openmpi as dependency; define our own src_install(); + add einfo message; added dev-perl/forks-shared dependency + + 30 Dec 2015; Martin Mokrejs maker-2.31.8.ebuild: sci-biology/maker: added dependency on dev-perl/forks 18 Dec 2015; Martin Mokrejs maker-2.31.8.ebuild: diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild index 37e8755..b631293 100644 --- a/sci-biology/maker/maker-2.31.8.ebuild +++ b/sci-biology/maker/maker-2.31.8.ebuild @@ -22,7 +22,7 @@ IUSE="mpi" # http://search.cpan.org/~rybskej/forks-0.36/lib/forks.pm # bug #566360 # http://search.cpan.org/~rybskej/forks-0.36/lib/forks/shared.pm DEPEND=" - mpi? ( sys-cluster/mpich2 ) + mpi? ( sys-cluster/mpich2 || ( sys-cluster/openmpi ) ) dev-perl/DBI dev-perl/DBD-SQLite dev-perl/File-Which @@ -36,6 +36,7 @@ DEPEND=" dev-perl/IO-Prompt dev-perl/Perl-Unsafe-Signals dev-perl/forks + dev-perl/forks-shared >=sci-biology/bioperl-1.6 sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ ) sci-biology/snap @@ -92,9 +93,19 @@ pkg_nofetch() { einfo "MAKER install process will stop." einfo "That in turn requires you to register at http://www.girinst.org/server/RepBase" einfo "to obtain sci-biology/repeatmasker-libraries data file" + einfo "For execution through openmpi or mpich please read INSTALL file" } src_compile(){ perl Build.PL || die ./Build install || die } + +src_install(){ + dobin bin/* + dodoc README INSTALL + insinto /usr/share/"{PN}"/GMOD/Apollo + doins GMOD/Apollo/gff3.tiers + insinto /usr/share/"{PN}"/GMOD/JBrowse + doins GMOD/JBrowse/maker.css +}