From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/maker/
Date: Wed, 30 Dec 2015 18:17:36 +0000 (UTC) [thread overview]
Message-ID: <1451499379.c5c8232d407b040a96110c2a04ca4049e6e7d86f.mmokrejs@gentoo> (raw)
commit: c5c8232d407b040a96110c2a04ca4049e6e7d86f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Dec 30 18:16:19 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Dec 30 18:16:19 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c5c8232d
sci-biology/maker: added openmpi as dependency; define our own src_install(); add einfo message; added dev-perl/forks-shared dependency
Package-Manager: portage-2.2.26
sci-biology/maker/ChangeLog | 4 ++++
sci-biology/maker/maker-2.31.8.ebuild | 13 ++++++++++++-
2 files changed, 16 insertions(+), 1 deletion(-)
diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog
index 254d082..2befe1a 100644
--- a/sci-biology/maker/ChangeLog
+++ b/sci-biology/maker/ChangeLog
@@ -3,6 +3,10 @@
# $Id$
30 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> maker-2.31.8.ebuild:
+ sci-biology/maker: added openmpi as dependency; define our own src_install();
+ add einfo message; added dev-perl/forks-shared dependency
+
+ 30 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> maker-2.31.8.ebuild:
sci-biology/maker: added dependency on dev-perl/forks
18 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> maker-2.31.8.ebuild:
diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild
index 37e8755..b631293 100644
--- a/sci-biology/maker/maker-2.31.8.ebuild
+++ b/sci-biology/maker/maker-2.31.8.ebuild
@@ -22,7 +22,7 @@ IUSE="mpi"
# http://search.cpan.org/~rybskej/forks-0.36/lib/forks.pm # bug #566360
# http://search.cpan.org/~rybskej/forks-0.36/lib/forks/shared.pm
DEPEND="
- mpi? ( sys-cluster/mpich2 )
+ mpi? ( sys-cluster/mpich2 || ( sys-cluster/openmpi ) )
dev-perl/DBI
dev-perl/DBD-SQLite
dev-perl/File-Which
@@ -36,6 +36,7 @@ DEPEND="
dev-perl/IO-Prompt
dev-perl/Perl-Unsafe-Signals
dev-perl/forks
+ dev-perl/forks-shared
>=sci-biology/bioperl-1.6
sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ )
sci-biology/snap
@@ -92,9 +93,19 @@ pkg_nofetch() {
einfo "MAKER install process will stop."
einfo "That in turn requires you to register at http://www.girinst.org/server/RepBase"
einfo "to obtain sci-biology/repeatmasker-libraries data file"
+ einfo "For execution through openmpi or mpich please read INSTALL file"
}
src_compile(){
perl Build.PL || die
./Build install || die
}
+
+src_install(){
+ dobin bin/*
+ dodoc README INSTALL
+ insinto /usr/share/"{PN}"/GMOD/Apollo
+ doins GMOD/Apollo/gff3.tiers
+ insinto /usr/share/"{PN}"/GMOD/JBrowse
+ doins GMOD/JBrowse/maker.css
+}
next reply other threads:[~2015-12-30 18:17 UTC|newest]
Thread overview: 25+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-12-30 18:17 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2021-08-31 9:24 [gentoo-commits] proj/sci:master commit in: sci-biology/maker/ Andrew Ammerlaan
2021-03-19 11:08 Andrew Ammerlaan
2021-03-18 18:54 Andrew Ammerlaan
2021-03-06 12:17 Andrew Ammerlaan
2021-01-19 16:26 Andrew Ammerlaan
2019-07-01 8:15 Martin Mokrejs
2019-03-28 21:46 Martin Mokrejs
2016-12-03 18:47 Martin Mokrejs
2016-08-02 15:21 Martin Mokrejs
2016-08-02 14:50 Martin Mokrejs
2015-12-31 21:26 Martin Mokrejs
2015-12-30 19:16 Martin Mokrejs
2015-12-30 17:43 Martin Mokrejs
2015-12-18 14:16 Martin Mokrejs
2015-12-18 13:51 Martin Mokrejs
2015-12-01 12:01 Martin Mokrejs
2015-11-24 17:06 Martin Mokrejs
2015-11-20 21:38 Martin Mokrejs
2015-11-20 21:28 Martin Mokrejs
2015-11-20 21:09 Martin Mokrejs
2015-03-30 19:50 [gentoo-commits] proj/sci:master commit in: sci-biology/MAKER/ Martin Mokrejs
2015-03-30 18:25 [gentoo-commits] proj/sci:master commit in: sci-biology/maker/ Martin Mokrejs
2014-09-16 4:07 [gentoo-commits] proj/sci:master commit in: sci-biology/MAKER/ Christoph Junghans
2014-03-23 21:06 Martin Mokrejs
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