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From: "Andreas Hüttel" <dilfridge@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-perl/Bio-SamTools/
Date: Mon, 28 Dec 2015 20:08:25 +0000 (UTC)	[thread overview]
Message-ID: <1451333316.087966e83658833cb4b436d828c3c0d3519cd5e4.dilfridge@gentoo> (raw)

commit:     087966e83658833cb4b436d828c3c0d3519cd5e4
Author:     Andreas K. Hüttel <dilfridge <AT> gentoo <DOT> org>
AuthorDate: Mon Dec 28 20:02:49 2015 +0000
Commit:     Andreas Hüttel <dilfridge <AT> gentoo <DOT> org>
CommitDate: Mon Dec 28 20:08:36 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=087966e8

dev-perl/Bio-SamTools: Version bump; remove old

Package-Manager: portage-2.2.26

 ...ls-1.390.0-r1.ebuild => Bio-SamTools-1.420.0.ebuild} | 17 +++++++++--------
 dev-perl/Bio-SamTools/Manifest                          |  2 +-
 2 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.420.0.ebuild
similarity index 77%
rename from dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild
rename to dev-perl/Bio-SamTools/Bio-SamTools-1.420.0.ebuild
index 1ad7fbe..68d7383 100644
--- a/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild
+++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.420.0.ebuild
@@ -2,11 +2,10 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
-
-MODULE_AUTHOR=LDS
-MODULE_VERSION=1.39
+EAPI=6
 
+DIST_AUTHOR=LDS
+DIST_VERSION=1.42
 inherit perl-module toolchain-funcs
 
 DESCRIPTION="Read SAM/BAM database files"
@@ -14,20 +13,22 @@ DESCRIPTION="Read SAM/BAM database files"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
+LICENSE="|| ( Apache-2.0 Artistic-2 GPL-1+ )"
 
 RDEPEND="
-	sci-biology/bioperl
+	>=sci-biology/bioperl-1.6.9
 	>=sci-biology/samtools-1
 "
 DEPEND="${RDEPEND}
 	virtual/perl-ExtUtils-CBuilder
-	dev-perl/Module-Build
+	>=dev-perl/Module-Build-0.420.0
 "
 
-SRC_TEST=do
+DIST_TEST=skip
+# cannot load its own library, fundamentally b0rken
 
 PATCHES=(
-	"${FILESDIR}"/${P}-samtools-1.patch
+	"${FILESDIR}"/${PN}-1.390.0-samtools-1.patch
 )
 
 src_prepare() {

diff --git a/dev-perl/Bio-SamTools/Manifest b/dev-perl/Bio-SamTools/Manifest
index bf52deb..9143d80 100644
--- a/dev-perl/Bio-SamTools/Manifest
+++ b/dev-perl/Bio-SamTools/Manifest
@@ -1,2 +1,2 @@
-DIST Bio-SamTools-1.39.tar.gz 331515 SHA256 a2baaa0f569c2b49e988978a121fb210fcb35200dcb2f183aa58bb03d711ef4f SHA512 aff502af24239cd64dec3a5a9cb6ab7280661f277cef066f79c87f608112d5870f46ffcc81f3bc2382f48d5247c7ab5de35e4afaa7ca4e286b0323978368d668 WHIRLPOOL db069d76fe386354b8cec60527de6612fc501428e9775e02574955cead3eba55db169697aaacc22c3b4df6475c6ecb72486b94c9b577da1deb42dc5c3791b04f
 DIST Bio-SamTools-1.41.tar.gz 338745 SHA256 b5d7ca16c96cc9fbee5daceb3268f36011740fe4de92074c17a729bac57c3077 SHA512 6f822cd219ecf86e95bc3a6bde1aebbe5eb8284b21b07ca919618c1422c37e6d182285d1a5e77848c6d5cea0dc74a51705f6bc1a27d44aeeaaa69f1cea58f147 WHIRLPOOL b651ea5059ea46ab5e31d237d3e52d7936921470bbd04133be70f935a47b913dc7f3b154c14d1af52f0ba2f5afc6878a27d88e4bbf9d39023cf786bca70f6696
+DIST Bio-SamTools-1.42.tar.gz 337821 SHA256 ef4b736e86442ce61f56ddd94befc302ccc4646cae3c45407e107400c703584c SHA512 6a1f95104ce91a800a314c304915af9d6e1cc477c7d5f42b640d0a27b18cd32c4ad9e261cac5556f4863652570a3c573d34245963fc4b9ade067981b2a329271 WHIRLPOOL 5a216e51173ee5a9a930013718452bcbfbcffe1aa1663f50d567daf17378a50135b1b0b6d750c9aece05de268e730faf6c54963823c037559fb50ed95dda32c7


             reply	other threads:[~2015-12-28 20:08 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-12-28 20:08 Andreas Hüttel [this message]
  -- strict thread matches above, loose matches on Subject: below --
2016-10-24 13:32 [gentoo-commits] repo/gentoo:master commit in: dev-perl/Bio-SamTools/ Pacho Ramos
2016-10-24 13:32 Pacho Ramos
2020-07-03 15:10 Kent Fredric
2020-08-06 16:40 Kent Fredric
2021-05-31 20:50 Andreas K. Hüttel
2022-03-10 21:12 Sam James

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