From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id DB8F11384B4 for ; Fri, 25 Dec 2015 21:00:57 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id C8A32E0857; Fri, 25 Dec 2015 21:00:55 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 1CB5BE0853 for ; Fri, 25 Dec 2015 21:00:55 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F2E063406F2 for ; Fri, 25 Dec 2015 21:00:52 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 3F7ADC6F for ; Fri, 25 Dec 2015 21:00:51 +0000 (UTC) From: "Marius Brehler" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Marius Brehler" Message-ID: <1451076448.f08c7474c8fed99cd2614babe0ea5462f31752ae.marbre@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/TransDecoder/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/TransDecoder/ChangeLog sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild X-VCS-Directories: sci-biology/TransDecoder/ X-VCS-Committer: marbre X-VCS-Committer-Name: Marius Brehler X-VCS-Revision: f08c7474c8fed99cd2614babe0ea5462f31752ae X-VCS-Branch: master Date: Fri, 25 Dec 2015 21:00:51 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: aba530ad-9555-4c2c-98a4-4659b84f2f01 X-Archives-Hash: 07dbcece7dc34cbdce9b4672f70146f8 commit: f08c7474c8fed99cd2614babe0ea5462f31752ae Author: Marius Brehler linux sungazer de> AuthorDate: Fri Dec 25 20:47:28 2015 +0000 Commit: Marius Brehler linux sungazer de> CommitDate: Fri Dec 25 20:47:28 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f08c7474 sci-biology/TransDecoder: Fix minorsyn, add missing die Package-Manager: portage-2.2.24 sci-biology/TransDecoder/ChangeLog | 4 ++++ sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild | 4 ++-- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/sci-biology/TransDecoder/ChangeLog b/sci-biology/TransDecoder/ChangeLog index ee19193..e9110b4 100644 --- a/sci-biology/TransDecoder/ChangeLog +++ b/sci-biology/TransDecoder/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ + 25 Dec 2015; Marius Brehler + TransDecoder-2.0.1.ebuild: + sci-biology/TransDecoder: Fix minorsyn, add missing die + 19 Nov 2015; Martin Mokrejs TransDecoder-2.0.1.ebuild: sci-biology/TransDecoder: note that Pfam-AB was discontinued diff --git a/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild b/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild index 113c915..dfe3fbb 100644 --- a/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild +++ b/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild @@ -15,7 +15,7 @@ if [ "$PV" == "9999" ]; then EGIT_REPO_URI="https://github.com/TransDecoder/TransDecoder.git" KEYWORDS="" else - SRC_URI="https://github.com/TransDecoder/TransDecoder/archive/"${PV}".tar.gz -> ${P}.tar.gz" + SRC_URI="https://github.com/TransDecoder/TransDecoder/archive/"${PV}".tar.gz -> ${P}.tar.gz" KEYWORDS="~amd64" S="${WORKDIR}"/TransDecoder-"${PV}" fi @@ -34,7 +34,7 @@ src_prepare(){ rm -rf transdecoder_plugins/cd-hit for f in PerlLib/*.pm; do p=`basename $f .pm`; - sed -e "s#use $p;#use TransDecoder::$p;#" -i PerlLib/*.pm util/*.pl TransDecoder.LongOrfs TransDecoder.Predict; + sed -e "s#use $p;#use TransDecoder::$p;#" -i PerlLib/*.pm util/*.pl TransDecoder.LongOrfs TransDecoder.Predict || die; done epatch "${FILESDIR}"/"${P}"__fix_paths.patch epatch "${FILESDIR}"/pfam_runner.pl.patch