* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2015-12-23 16:32 Justin Lecher
0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2015-12-23 16:32 UTC (permalink / raw
To: gentoo-commits
commit: c448e05dda73f7f3376ed3bf28de34bf109ac6bb
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 23 16:22:51 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Dec 23 16:32:22 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c448e05d
sci-biology/allpathslg: default_src_configure doesn't support myeconfargs
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/allpathslg/allpathslg-52488.ebuild | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/sci-biology/allpathslg/allpathslg-52488.ebuild b/sci-biology/allpathslg/allpathslg-52488.ebuild
index 0b0b806..effa25c 100644
--- a/sci-biology/allpathslg/allpathslg-52488.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488.ebuild
@@ -35,14 +35,12 @@ pkg_pretend() {
}
src_prepare() {
- default_src_prepare
+ default
eautoreconf
}
src_configure() {
- local myeconfargs=(
+ econf \
$(use_enable openmp)
- )
- default_src_configure
}
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2015-12-23 18:55 Justin Lecher
0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2015-12-23 18:55 UTC (permalink / raw
To: gentoo-commits
commit: 8ebd98c00dd68c1b4ff0aaeb4cadfc1980753655
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 23 16:34:43 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Dec 23 18:55:56 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8ebd98c0
sci-biology/allpathslg: Drop old
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/allpathslg/Manifest | 2 -
sci-biology/allpathslg/allpathslg-47093.ebuild | 36 -----------------
sci-biology/allpathslg/allpathslg-52415.ebuild | 54 --------------------------
3 files changed, 92 deletions(-)
diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest
index 8db6db4..cd18242 100644
--- a/sci-biology/allpathslg/Manifest
+++ b/sci-biology/allpathslg/Manifest
@@ -1,4 +1,2 @@
DIST allpathslg-42337.tar.gz 2739498 SHA256 a2c8f64f6ba1705b2331ca07761d189183c6745f8717ffc67ee98e9e3ca3dba6 SHA512 7595fbe14a5029578b57d16f781cbb2a0f0ad6b1af2dd770e2274f8fe2e11d0013fdff12cc85c1be748e769ffb23b7d5fe30920feef38e0e8b947d05b8bda31c WHIRLPOOL 79bda55d49877641eb55630950472a06d8f25db467dbfecde8b4d04c3ce16c071d32dd312fa9a0f72723bf4caa8f9b1d0346acf438b9671b4bed2c0672c788b9
-DIST allpathslg-47093.tar.gz 3057279 SHA256 493e21ae727250ea632b73b61545c32de2d8fb31e6a92605393ebb4af251f828 SHA512 499d23de52cad666fac663eb4a7d770b2129c4f9622f6c808ce30283429b6f67fb343f8712b07c7cb062c429117a0855da960ffc1d2ffb4e7ec2f544ba5a6314 WHIRLPOOL a3bc58dc140be3cddbd44c7035e628c4425bf86bc38592004df21d4dc91958ced9f08d667b43c15c214e53e3098805f368a856e66e5c2049b0e03d043b098ebc
-DIST allpathslg-52415.tar.gz 3129266 SHA256 3c62024a0eacdc223bc727be4718da644fb302f785c7c7347a09ff422ce96362 SHA512 afe25b07d2e07dee3ced2283ffe858f24acfb35d53e9c11fcbcc47373594453d798c344d5604eb24d5c8d3685a185a3b8807bb3547d8066cbaab8d8cf927d1d6 WHIRLPOOL de15dfeddeca2f64fd8780839c45096c28cb47ec219d781f6754f9cf65ad6dfc39b8a48aaa2c36f777282fb08ac78ef8cd04c2e1d79f4f797710d3bb38792785
DIST allpathslg-52488.tar.gz 3121949 SHA256 035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542 SHA512 c44ef1a3ed5b343bf096663309cc399e79d65e83175232743cf330fd0d426633bd0d388922fd0c73ac0927d85ea9005549c8e4f7711c79fea7107068510ef30d WHIRLPOOL c63a13450c55fce8f2c5399bdd5d8f32939e31d9d13a120835b1d826ae96e251fea81caa134d5d45ad857af0777c22e4ad1d894c81a74db6d83a7d9ad83b12b4
diff --git a/sci-biology/allpathslg/allpathslg-47093.ebuild b/sci-biology/allpathslg/allpathslg-47093.ebuild
deleted file mode 100644
index ab971ec..0000000
--- a/sci-biology/allpathslg/allpathslg-47093.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit autotools eutils flag-o-matic
-
-DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
-SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 -x86"
-
-DEPEND="
- dev-libs/boost
- !sci-biology/allpaths
- sci-biology/vaal"
-RDEPEND=""
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-gcc4.9.patch
- sed -i 's/-ggdb//' configure.ac || die
- eautoreconf
-}
-
-src_install() {
- default
- # Provided by sci-biology/vaal
- for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
- rm "${ED}/usr/bin/$i" || die
- done
-}
diff --git a/sci-biology/allpathslg/allpathslg-52415.ebuild b/sci-biology/allpathslg/allpathslg-52415.ebuild
deleted file mode 100644
index 29de20e..0000000
--- a/sci-biology/allpathslg/allpathslg-52415.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=true
-
-inherit autotools-utils flag-o-matic
-
-DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
-# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
-SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="openmp"
-
-DEPEND="
- dev-libs/boost
- !sci-biology/allpaths
- sci-biology/vaal"
-RDEPEND=""
-
-pkg_pretend() {
- # as of release 44849, GCC 4.7.0 (or higher) is required
- # seems pre gcc-4.7 users must stay with:
- # ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz
- if [[ ${MERGE_TYPE} != binary ]]; then
- [[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \
- die "You need to use gcc >4.7"
- fi
-}
-
-src_prepare() {
- local i
- sed \
- -e 's/-ggdb//' \
- -e 's:CEHCK:CHECK:g' \
- -i configure.ac || die
- for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
- sed -e "/bin_PROGRAMS/s: ${i} : :g" -i src/Makefile.am || die
- done
- autotools-utils_src_prepare
-}
-
-src_configure() {
- local myeconfargs=(
- $(use_enable openmp)
- )
- autotools-utils_src_configure
-}
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2015-12-29 11:36 Justin Lecher
0 siblings, 0 replies; 8+ messages in thread
From: Justin Lecher @ 2015-12-29 11:36 UTC (permalink / raw
To: gentoo-commits
commit: e4bde0761cc5d8b21d7f9d7d40145a3fa160e384
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Dec 29 11:35:53 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Dec 29 11:36:00 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e4bde076
sci-biology/allpathslg: Block sci-biology/vaal as it is nicluded in this release
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=570070
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/allpathslg/allpathslg-52488.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/allpathslg/allpathslg-52488.ebuild b/sci-biology/allpathslg/allpathslg-52488.ebuild
index effa25c..4518cac 100644
--- a/sci-biology/allpathslg/allpathslg-52488.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488.ebuild
@@ -19,7 +19,7 @@ IUSE="openmp"
DEPEND="
dev-libs/boost
!sci-biology/allpaths
- sci-biology/vaal"
+ !sci-biology/vaal"
RDEPEND=""
PATCHES=("${FILESDIR}/${P}_fix-buildsystem.patch" "${FILESDIR}/${P}_remove-namespace-std.patch")
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2016-01-17 10:52 David Seifert
0 siblings, 0 replies; 8+ messages in thread
From: David Seifert @ 2016-01-17 10:52 UTC (permalink / raw
To: gentoo-commits
commit: 0a3000eaaa11495660b9def7f37f87c8f2f23c81
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 17 10:43:48 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jan 17 10:52:24 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0a3000ea
sci-biology/allpathslg: Add blocking packages to RDEPEND too
Package-Manager: portage-2.2.26
...llpathslg-52488.ebuild => allpathslg-52488-r1.ebuild} | 16 ++++++++++------
1 file changed, 10 insertions(+), 6 deletions(-)
diff --git a/sci-biology/allpathslg/allpathslg-52488.ebuild b/sci-biology/allpathslg/allpathslg-52488-r1.ebuild
similarity index 82%
rename from sci-biology/allpathslg/allpathslg-52488.ebuild
rename to sci-biology/allpathslg/allpathslg-52488-r1.ebuild
index 4518cac..268d759 100644
--- a/sci-biology/allpathslg/allpathslg-52488.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488-r1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
-inherit autotools eutils flag-o-matic
+inherit autotools flag-o-matic
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12
@@ -16,13 +16,17 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE="openmp"
-DEPEND="
- dev-libs/boost
+RDEPEND="
!sci-biology/allpaths
!sci-biology/vaal"
-RDEPEND=""
+DEPEND="
+ ${RDEPEND}
+ dev-libs/boost"
-PATCHES=("${FILESDIR}/${P}_fix-buildsystem.patch" "${FILESDIR}/${P}_remove-namespace-std.patch")
+PATCHES=(
+ "${FILESDIR}/${P}_fix-buildsystem.patch"
+ "${FILESDIR}/${P}_remove-namespace-std.patch"
+)
pkg_pretend() {
# as of release 44849, GCC 4.7.0 (or higher) is required
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2016-08-13 10:34 David Seifert
0 siblings, 0 replies; 8+ messages in thread
From: David Seifert @ 2016-08-13 10:34 UTC (permalink / raw
To: gentoo-commits
commit: aee8fa1dbbe56f8f592e3d4dfc4bc6832126a45a
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Aug 13 10:33:50 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Aug 13 10:34:09 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aee8fa1d
sci-biology/allpathslg: Unconditionally require OpenMP support
Gentoo-bug: 591166
* The configure script of sci-biology/allpathslg allows for
specifying --enable/--disable-openmp, without it actually
being optional.
Package-Manager: portage-2.3.0
...-52488-r1.ebuild => allpathslg-52488-r2.ebuild} | 27 ++++++++++++++--------
1 file changed, 17 insertions(+), 10 deletions(-)
diff --git a/sci-biology/allpathslg/allpathslg-52488-r1.ebuild b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
similarity index 67%
rename from sci-biology/allpathslg/allpathslg-52488-r1.ebuild
rename to sci-biology/allpathslg/allpathslg-52488-r2.ebuild
index 268d759..4164bce 100644
--- a/sci-biology/allpathslg/allpathslg-52488-r1.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
@@ -4,7 +4,7 @@
EAPI=6
-inherit autotools flag-o-matic
+inherit autotools flag-o-matic toolchain-funcs
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12
@@ -14,14 +14,13 @@ SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
-IUSE="openmp"
RDEPEND="
!sci-biology/allpaths
!sci-biology/vaal"
DEPEND="
${RDEPEND}
- dev-libs/boost"
+ dev-libs/boost:="
PATCHES=(
"${FILESDIR}/${P}_fix-buildsystem.patch"
@@ -33,8 +32,21 @@ pkg_pretend() {
# seems pre gcc-4.7 users must stay with:
# ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz
if [[ ${MERGE_TYPE} != binary ]]; then
- [[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \
- die "You need to use gcc >4.7"
+ tc-is-gcc && [[ $(gcc-version) < 4.7 ]] && \
+ die "You need to use gcc >4.7"
+ fi
+}
+
+pkg_setup() {
+ if ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected compiler"
+
+ if tc-is-clang; then
+ ewarn "OpenMP support in sys-devel/clang is provided by sys-libs/libomp,"
+ ewarn "which you will need to build ${CATEGORY}/${PN} with USE=\"openmp\""
+ fi
+
+ die "need openmp capable compiler"
fi
}
@@ -43,8 +55,3 @@ src_prepare() {
eautoreconf
}
-
-src_configure() {
- econf \
- $(use_enable openmp)
-}
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2017-02-20 22:10 David Seifert
0 siblings, 0 replies; 8+ messages in thread
From: David Seifert @ 2017-02-20 22:10 UTC (permalink / raw
To: gentoo-commits
commit: f9fe558786e5afc92cfe86f3a0060e64f2acdeeb
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 20 22:07:05 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb 20 22:10:02 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f9fe5587
sci-biology/allpathslg: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/allpathslg/Manifest | 1 -
sci-biology/allpathslg/allpathslg-42337.ebuild | 35 --------------------------
2 files changed, 36 deletions(-)
diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest
index cd18242ec5..c87071a889 100644
--- a/sci-biology/allpathslg/Manifest
+++ b/sci-biology/allpathslg/Manifest
@@ -1,2 +1 @@
-DIST allpathslg-42337.tar.gz 2739498 SHA256 a2c8f64f6ba1705b2331ca07761d189183c6745f8717ffc67ee98e9e3ca3dba6 SHA512 7595fbe14a5029578b57d16f781cbb2a0f0ad6b1af2dd770e2274f8fe2e11d0013fdff12cc85c1be748e769ffb23b7d5fe30920feef38e0e8b947d05b8bda31c WHIRLPOOL 79bda55d49877641eb55630950472a06d8f25db467dbfecde8b4d04c3ce16c071d32dd312fa9a0f72723bf4caa8f9b1d0346acf438b9671b4bed2c0672c788b9
DIST allpathslg-52488.tar.gz 3121949 SHA256 035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542 SHA512 c44ef1a3ed5b343bf096663309cc399e79d65e83175232743cf330fd0d426633bd0d388922fd0c73ac0927d85ea9005549c8e4f7711c79fea7107068510ef30d WHIRLPOOL c63a13450c55fce8f2c5399bdd5d8f32939e31d9d13a120835b1d826ae96e251fea81caa134d5d45ad857af0777c22e4ad1d894c81a74db6d83a7d9ad83b12b4
diff --git a/sci-biology/allpathslg/allpathslg-42337.ebuild b/sci-biology/allpathslg/allpathslg-42337.ebuild
deleted file mode 100644
index 9fb44dfcc9..0000000000
--- a/sci-biology/allpathslg/allpathslg-42337.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=4
-
-inherit autotools flag-o-matic
-
-DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
-SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 -x86"
-
-DEPEND="
- dev-libs/boost
- !sci-biology/allpaths
- sci-biology/vaal"
-RDEPEND=""
-
-src_prepare() {
- sed -i 's/-ggdb3//' configure.ac || die
- eautoreconf
-}
-
-src_install() {
- einstall || die
- # Provided by sci-biology/vaal
- for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
- rm "${D}/usr/bin/$i" || die
- done
-}
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2017-12-24 18:00 David Seifert
0 siblings, 0 replies; 8+ messages in thread
From: David Seifert @ 2017-12-24 18:00 UTC (permalink / raw
To: gentoo-commits
commit: ad80f329e6e91c1c6549c8df3c298a4d1d8a6657
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 24 17:59:40 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Dec 24 18:00:27 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ad80f329
sci-biology/allpathslg: Sanitize ebuild
Package-Manager: Portage-2.3.19, Repoman-2.3.6
sci-biology/allpathslg/allpathslg-52488-r2.ebuild | 19 ++-----------------
1 file changed, 2 insertions(+), 17 deletions(-)
diff --git a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
index 391575f4f05..964904d6655 100644
--- a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
@@ -29,26 +29,11 @@ PATCHES=(
)
pkg_pretend() {
- # as of release 44849, GCC 4.7.0 (or higher) is required
- # seems pre gcc-4.7 users must stay with:
- # ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz
- if [[ ${MERGE_TYPE} != binary ]]; then
- tc-is-gcc && [[ $(gcc-version) < 4.7 ]] && \
- die "You need to use gcc >4.7"
- fi
+ [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
}
pkg_setup() {
- if ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected compiler"
-
- if tc-is-clang; then
- ewarn "OpenMP support in sys-devel/clang is provided by sys-libs/libomp,"
- ewarn "which you will need to build ${CATEGORY}/${PN} with USE=\"openmp\""
- fi
-
- die "need openmp capable compiler"
- fi
+ [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
}
src_prepare() {
^ permalink raw reply related [flat|nested] 8+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/
@ 2018-10-21 15:17 Pacho Ramos
0 siblings, 0 replies; 8+ messages in thread
From: Pacho Ramos @ 2018-10-21 15:17 UTC (permalink / raw
To: gentoo-commits
commit: edca5a71f730e3c24b0704faeccb1b879c23e2be
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 21 15:05:09 2018 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Oct 21 15:17:26 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=edca5a71
sci-biology/allpathslg: Fix build with glibc-2.27
Closes: https://bugs.gentoo.org/647340
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11
sci-biology/allpathslg/allpathslg-52488-r2.ebuild | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
index 964904d6655..cc9498b65f7 100644
--- a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -39,5 +39,8 @@ pkg_setup() {
src_prepare() {
default
+ # Fix building with glibc-2.27, bug #647340
+ sed -i -e 's/-mieee-fp//' configure.ac || die
+
eautoreconf
}
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2015-12-23 18:55 [gentoo-commits] repo/gentoo:master commit in: sci-biology/allpathslg/ Justin Lecher
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2018-10-21 15:17 Pacho Ramos
2017-12-24 18:00 David Seifert
2017-02-20 22:10 David Seifert
2016-08-13 10:34 David Seifert
2016-01-17 10:52 David Seifert
2015-12-29 11:36 Justin Lecher
2015-12-23 16:32 Justin Lecher
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