[gentoo-commits] repo/gentoo:master commit in: sci-libs/scikits_learn/

["Justin Lecher" <jlec@gentoo.org>]

commit:     8194b256bb9c1dcc01db4947f963144b0729bae7
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Nov  6 15:10:50 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Nov  6 16:22:23 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8194b256

sci-libs/scikits_learn: Version Bump

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-libs/scikits_learn/Manifest                  |   1 +
 sci-libs/scikits_learn/metadata.xml              |   2 +-
 sci-libs/scikits_learn/scikits_learn-0.17.ebuild | 113 +++++++++++++++++++++++
 3 files changed, 115 insertions(+), 1 deletion(-)

diff --git a/sci-libs/scikits_learn/Manifest b/sci-libs/scikits_learn/Manifest
index 94c82bc..f395149 100644
--- a/sci-libs/scikits_learn/Manifest
+++ b/sci-libs/scikits_learn/Manifest
@@ -3,3 +3,4 @@ DIST scikit-learn-0.14.1.tar.gz 23228378 SHA256 4c317cabb56c61f4c574879b53aa6bbe
 DIST scikit-learn-0.15.1.tar.gz 7034220 SHA256 4b13456727b9310857f12cc7b9d1c62d59f3ef602fea9d391afc0c8c847ed17d SHA512 4c2e68b1bb75c85c2a83605a32ba5adbd224bc25b19fca85e18dbe24f20cbe51cbfb02be546a4f05fc190f77e438cb17c6a5d69026455e8c11907599462f9984 WHIRLPOOL e1bc387b013abcab18d8ee0545dda543bb098b9d7636229880dea667fc4627d1822fe8a430a2d26dbafcc0b0e90326d5529245e6eff1345b73fc5a24b7a51096
 DIST scikit-learn-0.15.2.tar.gz 7007922 SHA256 1a8a881f6f13edc0ac58931ce21f899eb7920af50aa08802413d1239e2aa5fa6 SHA512 ca2470df73be1b735f756f641fdbb4dc59a54b67d12f61c54542f0928ce9242665d1b8793673a9d989a41f2c2945c2ba92ed54fc9914fbe030a5c8af289c6523 WHIRLPOOL 9043bf653f8d866f98e5a2342fbacf51fafefd5096e70989ebeb4b580c38b5468c3a2eb598d4d5492ba1413378b8c133938baa20d4a292c9f94c5596dbf1d405
 DIST scikit-learn-0.16.1.tar.gz 7267115 SHA256 c0721e295056c95c7002e05726f2bd271a7923e88bdeab34a2b60aac2b0ee6e4 SHA512 18ea7420a4a7f23f030ad1e20cf29dd7d6183872ed4aa3daf4bfb5106728de21775461b90a917f231e56fee78eea5927ff8c3160c1da1473f34315b00994461b WHIRLPOOL 15eba05ba0d9ac62ed30636ece9091cb9930e432e5726b67be3de0ae5b81a187eac8cac69184106b4a5a1c4393801fb6a375b6f025c3562223ad5ed0e508ad8c
+DIST scikit-learn-0.17.tar.gz 7834903 SHA256 23a5b6804524cb2cd54d8310010169511c7633dcf69af7439747eec02677f314 SHA512 53a76e2f90e27967bf216cd9d7e8051ed847a3381e3b7b7b8236511b4105eef41bd4d3c9f7f71a51db4b0bf99cbd571d7c1b26803757cff04424b70cb834b555 WHIRLPOOL 3a1ef13dafe6eb38389f68bc75dee10bfe141bac6d2782cd11be27ffcb8fe7efdf113b6911a238c6cd141bfe3b69960f47cf0725d0ea033129dff8fb5c57bef4

diff --git a/sci-libs/scikits_learn/metadata.xml b/sci-libs/scikits_learn/metadata.xml
index e393de4..f6f2f71 100644
--- a/sci-libs/scikits_learn/metadata.xml
+++ b/sci-libs/scikits_learn/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version='1.0' encoding='UTF-8'?>
+<?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>

diff --git a/sci-libs/scikits_learn/scikits_learn-0.17.ebuild b/sci-libs/scikits_learn/scikits_learn-0.17.ebuild
new file mode 100644
index 0000000..7f2e53f
--- /dev/null
+++ b/sci-libs/scikits_learn/scikits_learn-0.17.ebuild
@@ -0,0 +1,113 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{3,4} )
+
+inherit distutils-r1 eutils multilib flag-o-matic
+
+MYPN="${PN/scikits_/scikit-}"
+MYP="${MYPN}-${PV}"
+
+DESCRIPTION="Python modules for machine learning and data mining"
+HOMEPAGE="http://scikit-learn.org"
+SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples test"
+
+RDEPEND="
+	dev-python/joblib[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	dev-python/nose[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.6.1[lapack,${PYTHON_USEDEP}]
+	sci-libs/scikits[${PYTHON_USEDEP}]
+	>=sci-libs/scipy-0.9[${PYTHON_USEDEP}]
+	virtual/funcsigs[${PYTHON_USEDEP}]
+	"
+DEPEND="
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/numpy[lapack,${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	doc? (
+		dev-python/joblib[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+		)"
+
+S="${WORKDIR}/${MYP}"
+
+python_prepare_all() {
+	# bug #397605
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+
+	# scikits-learn now uses the horrible numpy.distutils automagic
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+
+	# use system joblib
+	rm -r sklearn/externals/joblib/* || die
+	echo "from joblib import *" > sklearn/externals/joblib/__init__.py
+	sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die
+	sed -i -e 's/..externals.joblib/joblib/g' \
+		sklearn/decomposition/tests/test_sparse_pca.py \
+		sklearn/metrics/pairwise.py || die
+
+	rm sklearn/externals/funcsigs.py || die
+	rm sklearn/externals/odict.py || die
+	sed \
+		-e 's:from ..externals.funcsigs import signature:from funcsigs import signature:g' \
+		-i sklearn/utils/fixes.py || die
+
+	# use gentoo cblas infrastructure
+	epatch "${FILESDIR}"/${PN}-0.14.1-system-cblas.patch
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	distutils-r1_python_compile ${SCIPY_FCONFIG}
+}
+
+python_compile_all() {
+	if use doc; then
+		cd "${S}/doc"
+		local d="${BUILD_DIR}"/lib
+		ln -s "${S}"/sklearn/datasets/{data,descr,images} \
+			"${d}"/sklearn/datasets
+		VARTEXFONTS="${T}"/fonts \
+			MPLCONFIGDIR="${BUILD_DIR}" \
+			PYTHONPATH="${d}" \
+			emake html
+		rm -r "${d}"/sklearn/datasets/{data,desr,images}
+	fi
+}
+
+python_test() {
+	# doc builds and runs tests
+	use doc && return
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	esetup.py \
+		install --root="${T}/test-${EPYTHON}" \
+		--no-compile ${SCIPY_FCONFIG}
+	pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null
+	nosetests -v sklearn --exe || die
+	popd > /dev/null
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+}
+
+python_install_all() {
+	find "${S}" -name \*LICENSE.txt -delete
+	use doc && HTML_DOCS=( doc/_build/html/. )
+	use examples && EXAMPLES=( examples/. )
+	distutils-r1_python_install_all
+}